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Oryza sativa
cluster # 5481 cluster # 5481       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5481#0 length = 520 sequences # 1  
consensus_5481#1 length = 441 sequences # 1  
consensus_5481#2 length = 351 sequences # 1  

consensusID : consensus_5481#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 520
fasta sequence
                              [AGAAGATCGTCGCCGGGGAGCGCAAGTTCGAGGACGTCGCCACCGAGGAGTCCGACTGCAACTCCGCCAAGCGTGGGGGTGACCTAGGTCCATTTGAAAGAGGCAAGATGCAGAAGGCTTTTGAGAAGGCAGTTCTTGCTCTGAAAGTTGGGGAGATAAGTGATGTGGTTGATACAGACAGTGGGGTGCATATCATACTGAGGACTGCCTGATTACGGCGGCAGTACGGGCCTTCTCAATCTCTCATTCTCTATACACTCCGTCGCTGTCTGCAACTCTGCATATCATATTGAGGCTGTTTGGGGGCAGAAGTATGGGCCTTGTCAATCTGTATACACTGGGGAAATTGGATGTTGGTTATTGCTTCGTTACAAACCTGTGCATGTACTCTCGATCTGCGAAAAGTTTATGTTTTACTCTTACATTTTGCTGGAGACATTTGCTCTGGAATGATGCTCAAGACAACCTATGAATATTGATTGTTACAACATGTTTGGAATTAGCTGAACTGAGCAGGAAG]

[+] EMBL AK105321             [AGAAGATCGTCGCCGGGGAGCGCAAGTTCGAGGACGTCGCCACCGAGGAGTCCGACTGCAACTCCGCCAAGCGTGGGGGTGACCTAGGTCCATTTGAAAGAGGCAAGATGCAGAAGGCTTTTGAGAAGGCAGTTCTTGCTCTGAAAGTTGGGGAGATAAGTGATGTGGTTGATACAGACAGTGGGGTGCATATCATACTGAGGACTGCCTGATTACGGCGGCAGTACGGGCCTTCTCAATCTCTCATTCTCTATACACTCCGTCGCTGTCTGCAACTCTGCATATCATATTGAGGCTGTTTGGGGGCAGAAGTATGGGCCTTGTCAATCTGTATACACTGGGGAAATTGGATGTTGGTTATTGCTTCGTTACAAACCTGTGCATGTACTCTCGATCTGCGAAAAGTTTATGTTTTACTCTTACATTTTGCTGGAGACATTTGCTCTGGAATGATGCTCAAGACAACCTATGAATATTGATTGTTACAACATGTTTGGAATTAGCTGAACTGAGCAGGAAG]


>consensus_5481#0 AGAAGATCGTCGCCGGGGAGCGCAAGTTCGAGGACGTCGCCACCGAGGAGTCCGACTGCA ACTCCGCCAAGCGTGGGGGTGACCTAGGTCCATTTGAAAGAGGCAAGATGCAGAAGGCTT TTGAGAAGGCAGTTCTTGCTCTGAAAGTTGGGGAGATAAGTGATGTGGTTGATACAGACA GTGGGGTGCATATCATACTGAGGACTGCCTGATTACGGCGGCAGTACGGGCCTTCTCAAT CTCTCATTCTCTATACACTCCGTCGCTGTCTGCAACTCTGCATATCATATTGAGGCTGTT TGGGGGCAGAAGTATGGGCCTTGTCAATCTGTATACACTGGGGAAATTGGATGTTGGTTA TTGCTTCGTTACAAACCTGTGCATGTACTCTCGATCTGCGAAAAGTTTATGTTTTACTCT TACATTTTGCTGGAGACATTTGCTCTGGAATGATGCTCAAGACAACCTATGAATATTGAT TGTTACAACATGTTTGGAATTAGCTGAACTGAGCAGGAAG



consensusID : consensus_5481#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence
                              [GGGGTGACCTAGGTCCATTTNAAAAAGGCAAGATGCAGAAGGCTTTTNAGAAGGCAGTTCTTGCTCTGAAAGTTGGGGAGATAAGTNATGTGGTTGATACANACAGTGGGGTGCATATCATACTGAGGACTGCCTGATTACGGCGGCAGTACGGGCCTTCTCAATCTCTCATTCTCTANACACTCCGTCGCTGTCTGCAACTCTGCATATCATATTGAGGCTGTTTGGGGGCANAAGTATGGGCCTTGTCAATCTGTATACACTGGGGAAATTGGATGTTGGTTATTGCTTCGTTACAAACCTGTGCATGTACTCTCGATCTGCGAAAAGTTTATGTTTTACTCTTACATTTTGCTGGANACATTTGCTCTGGAATGATGCTCAAGACAACCTATGAATATTGATTGTTACAACATGTTTGGAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU174490             [GGGGTGACCTAGGTCCATTTNAAAAAGGCAAGATGCAGAAGGCTTTTNAGAAGGCAGTTCTTGCTCTGAAAGTTGGGGAGATAAGTNATGTGGTTGATACANACAGTGGGGTGCATATCATACTGAGGACTGCCTGATTACGGCGGCAGTACGGGCCTTCTCAATCTCTCATTCTCTANACACTCCGTCGCTGTCTGCAACTCTGCATATCATATTGAGGCTGTTTGGGGGCANAAGTATGGGCCTTGTCAATCTGTATACACTGGGGAAATTGGATGTTGGTTATTGCTTCGTTACAAACCTGTGCATGTACTCTCGATCTGCGAAAAGTTTATGTTTTACTCTTACATTTTGCTGGANACATTTGCTCTGGAATGATGCTCAAGACAACCTATGAATATTGATTGTTACAACATGTTTGGAAAAAAAAAAAAAAAAAAA]


>consensus_5481#1 GGGGTGACCTAGGTCCATTTNAAAAAGGCAAGATGCAGAAGGCTTTTNAGAAGGCAGTTC TTGCTCTGAAAGTTGGGGAGATAAGTNATGTGGTTGATACANACAGTGGGGTGCATATCA TACTGAGGACTGCCTGATTACGGCGGCAGTACGGGCCTTCTCAATCTCTCATTCTCTANA CACTCCGTCGCTGTCTGCAACTCTGCATATCATATTGAGGCTGTTTGGGGGCANAAGTAT GGGCCTTGTCAATCTGTATACACTGGGGAAATTGGATGTTGGTTATTGCTTCGTTACAAA CCTGTGCATGTACTCTCGATCTGCGAAAAGTTTATGTTTTACTCTTACATTTTGCTGGAN ACATTTGCTCTGGAATGATGCTCAAGACAACCTATGAATATTGATTGTTACAACATGTTT GGAAAAAAAAAAAAAAAAAAA



consensusID : consensus_5481#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 351
fasta sequence
                              [ATTGGTGGGTTGATGTACAGACAGTTTGGGGTGCATATCATACTGTAGGNCTGCCTGATTACGCGGCAGTACAGGGCCTTCTCAATCTCTCATTCTCTATACACTCACGTCGCTGTCTGCAACGTCGGCAGTATCATATTGAGCTGTTTGGGGGCAGAAGTATGGCCCTTGTCAAATCTGTATACACTGGGGAAATTGGATGTTGGTTATTGCTTCGTGTACAAACCTGTGCATGTACTTCGTCGATCTGCGAAAAGTTTATGTTTTACTCTTACATTTTCTGGAGACATTTGCTCTGGAATGATGGCTCAAGACAACCTAGGAATATGGATGGTTACAACATGTTNGGAA]

[+] EMBL BQ908759             [ATTGGTGGGTTGATGTACAGACAGTTTGGGGTGCATATCATACTGTAGGNCTGCCTGATTACGCGGCAGTACAGGGCCTTCTCAATCTCTCATTCTCTATACACTCACGTCGCTGTCTGCAACGTCGGCAGTATCATATTGAGCTGTTTGGGGGCAGAAGTATGGCCCTTGTCAAATCTGTATACACTGGGGAAATTGGATGTTGGTTATTGCTTCGTGTACAAACCTGTGCATGTACTTCGTCGATCTGCGAAAAGTTTATGTTTTACTCTTACATTTTCTGGAGACATTTGCTCTGGAATGATGGCTCAAGACAACCTAGGAATATGGATGGTTACAACATGTTNGGAA]


>consensus_5481#2 ATTGGTGGGTTGATGTACAGACAGTTTGGGGTGCATATCATACTGTAGGNCTGCCTGATT ACGCGGCAGTACAGGGCCTTCTCAATCTCTCATTCTCTATACACTCACGTCGCTGTCTGC AACGTCGGCAGTATCATATTGAGCTGTTTGGGGGCAGAAGTATGGCCCTTGTCAAATCTG TATACACTGGGGAAATTGGATGTTGGTTATTGCTTCGTGTACAAACCTGTGCATGTACTT CGTCGATCTGCGAAAAGTTTATGTTTTACTCTTACATTTTCTGGAGACATTTGCTCTGGA ATGATGGCTCAAGACAACCTAGGAATATGGATGGTTACAACATGTTNGGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5481#0      AGAAGATCGTCGCCGGGGAGCGCAAGTTCGAGGACGTCGCCACCGAGGAGTCCGACTGCA 60
consensus_5481#1      ------------------------------------------------------------
consensus_5481#2      ------------------------------------------------------------
                                                                                  

consensus_5481#0      ACTCCGCCAAGCGTGGGGGTGACCTAGGTCCATTTGAAAGAGGCAAGATGCAGAAGGCTT 120
consensus_5481#1      ---------------GGGGTGACCTAGGTCCATTTNAAAAAGGCAAGATGCAGAAGGCTT 45
consensus_5481#2      ------------------------------------------------------------
                                                                                  

consensus_5481#0      TTGAGAAGGCAGTTCTTGCTCTGAAAGTTGGGGAGATAAGTGATGTGGTTGATACAGACA 180
consensus_5481#1      TTNAGAAGGCAGTTCTTGCTCTGAAAGTTGGGGAGATAAGTNATGTGGTTGATACANACA 105
consensus_5481#2      -----------------------------------ATTGGTGGGTTGATGTACAGACAGT 25
                                                         **  **    ** *  * * * *  

consensus_5481#0      GTGGGGTGCATATCATACTG-AGGACTGCCTGATTACGGCGGCAGTAC-GGGCCTTCTCA 238
consensus_5481#1      GTGGGGTGCATATCATACTG-AGGACTGCCTGATTACGGCGGCAGTAC-GGGCCTTCTCA 163
consensus_5481#2      TTGGGGTGCATATCATACTGTAGGNCTGCCTGATTACG-CGGCAGTACAGGGCCTTCTCA 84
                       ******************* *** ************* ********* ***********

consensus_5481#0      ATCTCTCATTCTCTATACACTC-CGTCGCTGTCTGCAAC-TCTGCA-TATCATATTGAGG 295
consensus_5481#1      ATCTCTCATTCTCTANACACTC-CGTCGCTGTCTGCAAC-TCTGCA-TATCATATTGAGG 220
consensus_5481#2      ATCTCTCATTCTCTATACACTCACGTCGCTGTCTGCAACGTCGGCAGTATCATATTGAG- 143
                      *************** ****** **************** ** *** ************ 

consensus_5481#0      CTGTTTGGGGGCAGAAGTATGGGCCTTGTCAA-TCTGTATACACTGGGGAAATTGGATGT 354
consensus_5481#1      CTGTTTGGGGGCANAAGTATGGGCCTTGTCAA-TCTGTATACACTGGGGAAATTGGATGT 279
consensus_5481#2      CTGTTTGGGGGCAGAAGTATGGCCCTTGTCAAATCTGTATACACTGGGGAAATTGGATGT 203
                      ************* ******** ********* ***************************

consensus_5481#0      TGGTTATTGCTTCGT-TACAAACCTGTGCATGTACTC--TCGATCTGCGAAAAGTTTATG 411
consensus_5481#1      TGGTTATTGCTTCGT-TACAAACCTGTGCATGTACTC--TCGATCTGCGAAAAGTTTATG 336
consensus_5481#2      TGGTTATTGCTTCGTGTACAAACCTGTGCATGTACTTCGTCGATCTGCGAAAAGTTTATG 263
                      *************** ********************   *********************

consensus_5481#0      TTTTACTCTTACATTTTGCTGGAGACATTTGCTCTGGAATGATG-CTCAAGACAACCTAT 470
consensus_5481#1      TTTTACTCTTACATTTTGCTGGANACATTTGCTCTGGAATGATG-CTCAAGACAACCTAT 395
consensus_5481#2      TTTTACTCTTACATTTT-CTGGAGACATTTGCTCTGGAATGATGGCTCAAGACAACCTAG 322
                      ***************** ***** ******************** ************** 

consensus_5481#0      GAATATTGATTGTTACAACATGTTTGGAATTAGCTGAACTGAGCAGGAAG 520
consensus_5481#1      GAATATTGATTGTTACAACATGTTTGGAAAAAAAAAAAAAAAAAAA---- 441
consensus_5481#2      GAATATGGATGGTTACAACATGTTNGGAA--------------------- 351
                      ****** *** ************* ****                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)