These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5481#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence [AGAAGATCGTCGCCGGGGAGCGCAAGTTCGAGGACGTCGCCACCGAGGAGTCCGACTGCAACTCCGCCAAGCGTGGGGGTGACCTAGGTCCATTTGAAAGAGGCAAGATGCAGAAGGCTTTTGAGAAGGCAGTTCTTGCTCTGAAAGTTGGGGAGATAAGTGATGTGGTTGATACAGACAGTGGGGTGCATATCATACTGAGGACTGCCTGATTACGGCGGCAGTACGGGCCTTCTCAATCTCTCATTCTCTATACACTCCGTCGCTGTCTGCAACTCTGCATATCATATTGAGGCTGTTTGGGGGCAGAAGTATGGGCCTTGTCAATCTGTATACACTGGGGAAATTGGATGTTGGTTATTGCTTCGTTACAAACCTGTGCATGTACTCTCGATCTGCGAAAAGTTTATGTTTTACTCTTACATTTTGCTGGAGACATTTGCTCTGGAATGATGCTCAAGACAACCTATGAATATTGATTGTTACAACATGTTTGGAATTAGCTGAACTGAGCAGGAAG] [+] EMBL AK105321 [AGAAGATCGTCGCCGGGGAGCGCAAGTTCGAGGACGTCGCCACCGAGGAGTCCGACTGCAACTCCGCCAAGCGTGGGGGTGACCTAGGTCCATTTGAAAGAGGCAAGATGCAGAAGGCTTTTGAGAAGGCAGTTCTTGCTCTGAAAGTTGGGGAGATAAGTGATGTGGTTGATACAGACAGTGGGGTGCATATCATACTGAGGACTGCCTGATTACGGCGGCAGTACGGGCCTTCTCAATCTCTCATTCTCTATACACTCCGTCGCTGTCTGCAACTCTGCATATCATATTGAGGCTGTTTGGGGGCAGAAGTATGGGCCTTGTCAATCTGTATACACTGGGGAAATTGGATGTTGGTTATTGCTTCGTTACAAACCTGTGCATGTACTCTCGATCTGCGAAAAGTTTATGTTTTACTCTTACATTTTGCTGGAGACATTTGCTCTGGAATGATGCTCAAGACAACCTATGAATATTGATTGTTACAACATGTTTGGAATTAGCTGAACTGAGCAGGAAG] consensusID : consensus_5481#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [GGGGTGACCTAGGTCCATTTNAAAAAGGCAAGATGCAGAAGGCTTTTNAGAAGGCAGTTCTTGCTCTGAAAGTTGGGGAGATAAGTNATGTGGTTGATACANACAGTGGGGTGCATATCATACTGAGGACTGCCTGATTACGGCGGCAGTACGGGCCTTCTCAATCTCTCATTCTCTANACACTCCGTCGCTGTCTGCAACTCTGCATATCATATTGAGGCTGTTTGGGGGCANAAGTATGGGCCTTGTCAATCTGTATACACTGGGGAAATTGGATGTTGGTTATTGCTTCGTTACAAACCTGTGCATGTACTCTCGATCTGCGAAAAGTTTATGTTTTACTCTTACATTTTGCTGGANACATTTGCTCTGGAATGATGCTCAAGACAACCTATGAATATTGATTGTTACAACATGTTTGGAAAAAAAAAAAAAAAAAAA] [+] EMBL AU174490 [GGGGTGACCTAGGTCCATTTNAAAAAGGCAAGATGCAGAAGGCTTTTNAGAAGGCAGTTCTTGCTCTGAAAGTTGGGGAGATAAGTNATGTGGTTGATACANACAGTGGGGTGCATATCATACTGAGGACTGCCTGATTACGGCGGCAGTACGGGCCTTCTCAATCTCTCATTCTCTANACACTCCGTCGCTGTCTGCAACTCTGCATATCATATTGAGGCTGTTTGGGGGCANAAGTATGGGCCTTGTCAATCTGTATACACTGGGGAAATTGGATGTTGGTTATTGCTTCGTTACAAACCTGTGCATGTACTCTCGATCTGCGAAAAGTTTATGTTTTACTCTTACATTTTGCTGGANACATTTGCTCTGGAATGATGCTCAAGACAACCTATGAATATTGATTGTTACAACATGTTTGGAAAAAAAAAAAAAAAAAAA] consensusID : consensus_5481#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence [ATTGGTGGGTTGATGTACAGACAGTTTGGGGTGCATATCATACTGTAGGNCTGCCTGATTACGCGGCAGTACAGGGCCTTCTCAATCTCTCATTCTCTATACACTCACGTCGCTGTCTGCAACGTCGGCAGTATCATATTGAGCTGTTTGGGGGCAGAAGTATGGCCCTTGTCAAATCTGTATACACTGGGGAAATTGGATGTTGGTTATTGCTTCGTGTACAAACCTGTGCATGTACTTCGTCGATCTGCGAAAAGTTTATGTTTTACTCTTACATTTTCTGGAGACATTTGCTCTGGAATGATGGCTCAAGACAACCTAGGAATATGGATGGTTACAACATGTTNGGAA] [+] EMBL BQ908759 [ATTGGTGGGTTGATGTACAGACAGTTTGGGGTGCATATCATACTGTAGGNCTGCCTGATTACGCGGCAGTACAGGGCCTTCTCAATCTCTCATTCTCTATACACTCACGTCGCTGTCTGCAACGTCGGCAGTATCATATTGAGCTGTTTGGGGGCAGAAGTATGGCCCTTGTCAAATCTGTATACACTGGGGAAATTGGATGTTGGTTATTGCTTCGTGTACAAACCTGTGCATGTACTTCGTCGATCTGCGAAAAGTTTATGTTTTACTCTTACATTTTCTGGAGACATTTGCTCTGGAATGATGGCTCAAGACAACCTAGGAATATGGATGGTTACAACATGTTNGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5481#0 AGAAGATCGTCGCCGGGGAGCGCAAGTTCGAGGACGTCGCCACCGAGGAGTCCGACTGCA 60 consensus_5481#1 ------------------------------------------------------------ consensus_5481#2 ------------------------------------------------------------ consensus_5481#0 ACTCCGCCAAGCGTGGGGGTGACCTAGGTCCATTTGAAAGAGGCAAGATGCAGAAGGCTT 120 consensus_5481#1 ---------------GGGGTGACCTAGGTCCATTTNAAAAAGGCAAGATGCAGAAGGCTT 45 consensus_5481#2 ------------------------------------------------------------ consensus_5481#0 TTGAGAAGGCAGTTCTTGCTCTGAAAGTTGGGGAGATAAGTGATGTGGTTGATACAGACA 180 consensus_5481#1 TTNAGAAGGCAGTTCTTGCTCTGAAAGTTGGGGAGATAAGTNATGTGGTTGATACANACA 105 consensus_5481#2 -----------------------------------ATTGGTGGGTTGATGTACAGACAGT 25 ** ** ** * * * * * consensus_5481#0 GTGGGGTGCATATCATACTG-AGGACTGCCTGATTACGGCGGCAGTAC-GGGCCTTCTCA 238 consensus_5481#1 GTGGGGTGCATATCATACTG-AGGACTGCCTGATTACGGCGGCAGTAC-GGGCCTTCTCA 163 consensus_5481#2 TTGGGGTGCATATCATACTGTAGGNCTGCCTGATTACG-CGGCAGTACAGGGCCTTCTCA 84 ******************* *** ************* ********* *********** consensus_5481#0 ATCTCTCATTCTCTATACACTC-CGTCGCTGTCTGCAAC-TCTGCA-TATCATATTGAGG 295 consensus_5481#1 ATCTCTCATTCTCTANACACTC-CGTCGCTGTCTGCAAC-TCTGCA-TATCATATTGAGG 220 consensus_5481#2 ATCTCTCATTCTCTATACACTCACGTCGCTGTCTGCAACGTCGGCAGTATCATATTGAG- 143 *************** ****** **************** ** *** ************ consensus_5481#0 CTGTTTGGGGGCAGAAGTATGGGCCTTGTCAA-TCTGTATACACTGGGGAAATTGGATGT 354 consensus_5481#1 CTGTTTGGGGGCANAAGTATGGGCCTTGTCAA-TCTGTATACACTGGGGAAATTGGATGT 279 consensus_5481#2 CTGTTTGGGGGCAGAAGTATGGCCCTTGTCAAATCTGTATACACTGGGGAAATTGGATGT 203 ************* ******** ********* *************************** consensus_5481#0 TGGTTATTGCTTCGT-TACAAACCTGTGCATGTACTC--TCGATCTGCGAAAAGTTTATG 411 consensus_5481#1 TGGTTATTGCTTCGT-TACAAACCTGTGCATGTACTC--TCGATCTGCGAAAAGTTTATG 336 consensus_5481#2 TGGTTATTGCTTCGTGTACAAACCTGTGCATGTACTTCGTCGATCTGCGAAAAGTTTATG 263 *************** ******************** ********************* consensus_5481#0 TTTTACTCTTACATTTTGCTGGAGACATTTGCTCTGGAATGATG-CTCAAGACAACCTAT 470 consensus_5481#1 TTTTACTCTTACATTTTGCTGGANACATTTGCTCTGGAATGATG-CTCAAGACAACCTAT 395 consensus_5481#2 TTTTACTCTTACATTTT-CTGGAGACATTTGCTCTGGAATGATGGCTCAAGACAACCTAG 322 ***************** ***** ******************** ************** consensus_5481#0 GAATATTGATTGTTACAACATGTTTGGAATTAGCTGAACTGAGCAGGAAG 520 consensus_5481#1 GAATATTGATTGTTACAACATGTTTGGAAAAAAAAAAAAAAAAAAA---- 441 consensus_5481#2 GAATATGGATGGTTACAACATGTTNGGAA--------------------- 351 ****** *** ************* **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||