cluster # 5482

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Oryza sativa
cluster # 5482 cluster # 5482 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5482#0 length = 632 sequences # 2

consensus_5482#1 length = 571 sequences # 1

consensusID : consensus_5482#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 632
fasta sequence

                              [GCTTCCAAATCGCCCGCAATTTCNCCCCCAAAAACCTCCCCTCCCCCCACCACCACCATTAATAAACCCCTCCTCCTCCTCCTCTTCTTCCTCCTCCGCCTCGCCATCTCACCGCCACCGCCTCCTCACTCACTCACTTCCTGCCACGTCATTCGCGCCATCGATCGCGTCGTCGCCTCAGCTGCCTAGAGGAAGAGGAGGAGTAGAGCTCGTCGTCTCCGCCGCCGCAGCTGGTGCTCGCTGTTGATTTATGTCGCCTGCTCTACCCCCGTTTCTCCATGGTTCTGAGCTCCAGTCGCCGCCAACGGTTTCTTCCTGCTCCCTTCTCATCCTCCTCCTTCAAAATTGGTATACGAGGGGCGCAAGAACACAGCAAAATCCCTTCACGATCTCCAGATTTGGATTTGGGGTGAAATACTTTGGCTTTCTTCATTTAGACTGGTGACAATTGAAGATAGCCCCCAAATTGCCTTAAGATTTGGTTTGGCTTGAGTGGATCAAGTACAGAATCCGAACTTTTGCAACCTGACATTCTTCTAGTTCACAAAGTCGGCCAGATTTGAGATTTCTCTCGGANATCTCTGTACACACAGGAGCTCTCTTTTGCTCCAGTTTTAAACAGAAGTTGGACA]

[+] EMBL AU056307             [GCTTCCAAATCGCCCGCAATTTCNCCCCCAAAAACCTCCCCTCCCCCCACCACCACCATTAATAAACCCCTCCTCCTCCTCCTCTTCTTCCTCCTCCGCCTCGCCATCTCACCGCCACCGCCTCCTCACTCACTCACTTCCTGCCACGTCATTCGCGCCATCGATCGCGTCGTCGCCTCAGCTGCCTAGAGGAAGAGGAGGAGTAGAGCTCGTCGTCTCCGCCGCCGCAGCTGGTGCTCGCTGTTGATTTATGTCGCCTGCTCTACCCCCGTTTCTCCATGGTTCTGAGCTCCAGTCGCCGCCAACGGTTTCTTCCTGCTCCCTTCTCATCCTCCTCCTTCAAAATTGGTATACGAGGGGCGCAAGAACACAGCAAAATCCCTTCACGATCTCCAGATTTGGATTTGGGGTGAAATACTTTGGCTTTCTTCATTTAGACTGGTGACAATTGAAGATAGCCCCCAAATTGCCTTAAGATTTGGTTTGGCTTGAGTGGATCAAGTACAGAATCCGAACTTTTGCAACCTGACATTCTTCTAGTTCACAAAGTCGGCCAGATTTGAGATTTCTCTCGGANATCTCTGTACACACAGGAGCTCTCTTTTGCTCCAGTTTTAAACAGAAGTTGGACA]
[+] EMBL AU166582             [                                                                                                                                                                                                                                                                                                                                                                                                                                          TCTTCATTTAGACTGGTGACAATTGAAGATAGCCCCCAAATTGCCTTAAGATTTGGTTTGGCTTGAGTGGATCAAGTACAGAATCCGAACTTTTGCAACCTGACATTCTTCTAGTTCACAAAGTCGGCCAGATTTGAGATTTCTCTCGGACATCTCTGTACACACAGGAGCTCTCTTTTGCTCCAGTTTTAAACAGAAGTTGGACA]




>consensus_5482#0
GCTTCCAAATCGCCCGCAATTTCNCCCCCAAAAACCTCCCCTCCCCCCACCACCACCATT
AATAAACCCCTCCTCCTCCTCCTCTTCTTCCTCCTCCGCCTCGCCATCTCACCGCCACCG
CCTCCTCACTCACTCACTTCCTGCCACGTCATTCGCGCCATCGATCGCGTCGTCGCCTCA
GCTGCCTAGAGGAAGAGGAGGAGTAGAGCTCGTCGTCTCCGCCGCCGCAGCTGGTGCTCG
CTGTTGATTTATGTCGCCTGCTCTACCCCCGTTTCTCCATGGTTCTGAGCTCCAGTCGCC
GCCAACGGTTTCTTCCTGCTCCCTTCTCATCCTCCTCCTTCAAAATTGGTATACGAGGGG
CGCAAGAACACAGCAAAATCCCTTCACGATCTCCAGATTTGGATTTGGGGTGAAATACTT
TGGCTTTCTTCATTTAGACTGGTGACAATTGAAGATAGCCCCCAAATTGCCTTAAGATTT
GGTTTGGCTTGAGTGGATCAAGTACAGAATCCGAACTTTTGCAACCTGACATTCTTCTAG
TTCACAAAGTCGGCCAGATTTGAGATTTCTCTCGGANATCTCTGTACACACAGGAGCTCT
CTTTTGCTCCAGTTTTAAACAGAAGTTGGACA

consensusID : consensus_5482#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 571
fasta sequence

                              [TTAGCTTTCGCGTCCTCTGTTTCCTTTCTTGATCTCCTCTTTTTTTTTCTTTTCTTTTTCTTTTTACTTTCCTTGATGATGAATTCGAATTCGCTTGTGATGTTGATCGATCCGCTTGTGGTGATGATGCTGGGAGGAGCAGAGAGGAAGAGGAGGAGTAGAGCTCGTCGTCTCCGCCGCCGCAGCTGGTGCTCGCTGTTGATTTATGTCGCCTGCTCTACCCCCGTTTCTCCATGGTTCTGAGCTCCAGTCGCCGCCAACGGTTTCTTCCTGCTCCCTTCTCATCCTCCTCCTTCAAAATTGGTATACGAGGGGCGCAAGAACACAGCAAAATCCCTTCACGATCTCCAGATTTGGATTTGGGGTGAAATACTTTGGCTTTCTTCATTTAGACTGGTGACAATTGAAGATAGCCCCCAAATTGCCTTAAGATTTGGTAAGTGTTGGCTGTTTTTAAGGCAATATATTATCAGCAAATAACTGCTCTTCCGTATTATAACTTTCCTAGTTTATTTGTACTACTTAAAGAGAACCTTTTCAAGACTAACTTACAGGGCATCATCACAAAACC]

[+] EMBL CF306893             [TTAGCTTTCGCGTCCTCTGTTTCCTTTCTTGATCTCCTCTTTTTTTTTCTTTTCTTTTTCTTTTTACTTTCCTTGATGATGAATTCGAATTCGCTTGTGATGTTGATCGATCCGCTTGTGGTGATGATGCTGGGAGGAGCAGAGAGGAAGAGGAGGAGTAGAGCTCGTCGTCTCCGCCGCCGCAGCTGGTGCTCGCTGTTGATTTATGTCGCCTGCTCTACCCCCGTTTCTCCATGGTTCTGAGCTCCAGTCGCCGCCAACGGTTTCTTCCTGCTCCCTTCTCATCCTCCTCCTTCAAAATTGGTATACGAGGGGCGCAAGAACACAGCAAAATCCCTTCACGATCTCCAGATTTGGATTTGGGGTGAAATACTTTGGCTTTCTTCATTTAGACTGGTGACAATTGAAGATAGCCCCCAAATTGCCTTAAGATTTGGTAAGTGTTGGCTGTTTTTAAGGCAATATATTATCAGCAAATAACTGCTCTTCCGTATTATAACTTTCCTAGTTTATTTGTACTACTTAAAGAGAACCTTTTCAAGACTAACTTACAGGGCATCATCACAAAACC]




>consensus_5482#1
TTAGCTTTCGCGTCCTCTGTTTCCTTTCTTGATCTCCTCTTTTTTTTTCTTTTCTTTTTC
TTTTTACTTTCCTTGATGATGAATTCGAATTCGCTTGTGATGTTGATCGATCCGCTTGTG
GTGATGATGCTGGGAGGAGCAGAGAGGAAGAGGAGGAGTAGAGCTCGTCGTCTCCGCCGC
CGCAGCTGGTGCTCGCTGTTGATTTATGTCGCCTGCTCTACCCCCGTTTCTCCATGGTTC
TGAGCTCCAGTCGCCGCCAACGGTTTCTTCCTGCTCCCTTCTCATCCTCCTCCTTCAAAA
TTGGTATACGAGGGGCGCAAGAACACAGCAAAATCCCTTCACGATCTCCAGATTTGGATT
TGGGGTGAAATACTTTGGCTTTCTTCATTTAGACTGGTGACAATTGAAGATAGCCCCCAA
ATTGCCTTAAGATTTGGTAAGTGTTGGCTGTTTTTAAGGCAATATATTATCAGCAAATAA
CTGCTCTTCCGTATTATAACTTTCCTAGTTTATTTGTACTACTTAAAGAGAACCTTTTCA
AGACTAACTTACAGGGCATCATCACAAAACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5482#0      GCTTCCAAATCGCCCGCAATTTCNCCCCCAAAAACCTCCCCTCCCCCCACCACCACCATT 60
consensus_5482#1      ------------------------------TTAGCTTTCGCGTCCTCTGTTTCCTTTCTT 30
                                                      * * * * *  ** *     **    **

consensus_5482#0      AATAAACCCCTCCTCCTCCTCCTCTTCTTCCTCCTCCGCCTCGCCATCTCACCGCCACCG 120
consensus_5482#1      GAT---CTCCTCTTTTTTTTTCTTTTCTTTTTCTTTTTACTT------TCCTTGATGATG 81
                       **   * **** *  *  * ** *****  ** *    **       **   *     *

consensus_5482#0      CCTCCTCACTCACTCACTTCCTGCCACGTCATTCGCGCCATCGATCGCGTCGTCGCCTC- 179
consensus_5482#1      AATTCGAATTCGCT-------TGTGATGTTGATCGATCCGCTTGTGGTGATGATGCTGGG 134
                        * *  * ** **       **  * **   ***  **     * * *  *  **    

consensus_5482#0      AGCTGCCTAGAGGAAGAGGAGGAGTAGAGCTCGTCGTCTCCGCCGCCGCAGCTGGTGCTC 239
consensus_5482#1      AGGAGCAGAGAGGAAGAGGAGGAGTAGAGCTCGTCGTCTCCGCCGCCGCAGCTGGTGCTC 194
                      **  **  ****************************************************

consensus_5482#0      GCTGTTGATTTATGTCGCCTGCTCTACCCCCGTTTCTCCATGGTTCTGAGCTCCAGTCGC 299
consensus_5482#1      GCTGTTGATTTATGTCGCCTGCTCTACCCCCGTTTCTCCATGGTTCTGAGCTCCAGTCGC 254
                      ************************************************************

consensus_5482#0      CGCCAACGGTTTCTTCCTGCTCCCTTCTCATCCTCCTCCTTCAAAATTGGTATACGAGGG 359
consensus_5482#1      CGCCAACGGTTTCTTCCTGCTCCCTTCTCATCCTCCTCCTTCAAAATTGGTATACGAGGG 314
                      ************************************************************

consensus_5482#0      GCGCAAGAACACAGCAAAATCCCTTCACGATCTCCAGATTTGGATTTGGGGTGAAATACT 419
consensus_5482#1      GCGCAAGAACACAGCAAAATCCCTTCACGATCTCCAGATTTGGATTTGGGGTGAAATACT 374
                      ************************************************************

consensus_5482#0      TTGGCTTTCTTCATTTAGACTGGTGACAATTGAAGATAGCCCCCAAATTGCCTTAAGATT 479
consensus_5482#1      TTGGCTTTCTTCATTTAGACTGGTGACAATTGAAGATAGCCCCCAAATTGCCTTAAGATT 434
                      ************************************************************

consensus_5482#0      TGGTTTGGCTTGAGTGGATCAAGTACAGAATCCGAACTTTTGCAACCTGACATTCTTCTA 539
consensus_5482#1      TGGTAAGTGTTGGCTGTTTTTAAGGCAATAT---ATTATCAGCAAATAACTGCTCTTCCG 491
                      ****  *  ***  **  *  *   **  **   *   *  ****        *****  

consensus_5482#0      GTTCACAAAGTCGGCCAGATTTGAGATTTCTCTCGGANATCTCTGTACACACAGGAGCTC 599
consensus_5482#1      TATTATAAC-TTTCCTAGTTTATTTGTACTACTTAAAGAGAACCTTTTCAAGACTAACTT 550
                        * * **  *   * ** **     *    **   * *   *  *    * *  * ** 

consensus_5482#0      TCTTTTGCTCCAGTTTTAAACAGAAGTTGGACA 632
consensus_5482#1      ACAGG-GCATCATCACAAAACC----------- 571
                       *    **  **     ****