These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5484#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1249 fasta sequence [CCCGTGCGTGCGATTCCGCGTCTGCCGCTGCCGGCCGCCGACCGCCGACCGCCGGTGCGCACCTTCGCCGAGGGAGGAGGAGTCTGTTATCGAGCAATTTCAACAAGGGCGGGGCCTTAATCTCCTCGTGCAGCTTGTAAACCTCAGAGTAGGGGTGGGAAAGAAGTTTGGTGCGTGGATTAAATTAGCTGAAAGAGAAATTTGGGAGATGAGTGAGCTTGCGAACAAGTTCTTGGTTCTTCATCTAGATGGTGAAGGTGGTGGAGCAGATGATACAGAAGAAGCACTGATCCAAACATCTTCCAGCATCAAAGAGGCTGATGCCGGTGAAAATGCGCTGAGTGACACGTTGGTACTAAATTACGATGAAGGATCTCTTGTATCATCATCTGGTGATTACCAGATGCCTTTGGTGTGGATAGACTTGGAAATGACTGGTTTGGATGTTGCAAAGGATCGGATATTGGAGATAGCTTGCATCATAACGGACGGTAAACTTACAAAACAAATAGAGGGCCCTGATTTGGTTATAAATCAGAAGAAAGATCTGTTAGATAACATGGATGAATGGTGCAAAACTCATCATGCAGCTAGTGGATTGACACAGAGAGTACTACAGAGTACGATTTCAGAGCATGACGCAGAGACACAAGTGTTAGATTTTGTTAAGAAGCATGTTGGTTCATCTCCTCCATTAATAGCTGGGAATTCTGTTTATGTGGATTTACTATTTTTGAAGAATTATATGCCGCAGCTTGCAGCCATCTTCTCTCACGTTATTGTTGATGTGAGCAGTATAATGGCTTTGTGCATCAGATGGTACCCCAAAGAAAGGAAGCGAACTCCTCAAAAAGGGAAAAAACATAGGGCAATGAATGATATCAAAGAAAGCATCGCTGAACTGAAATACTACGAGGACAACATTTTCAAACCTCAAAAATCTAAGCAGTAGCTACATGGATGGAGCATGGTGGGCATCTTCATGATGGACAGCAAATCGATTCACATGCTAGCCATGATTGAAAATGGATTTTTCATATCAATATTTCCAAGTGTCACTTTGACCTCGTATTTAAATACGTGTTTTGTTTTCATGTCCATTGATCAGTGCCTGGATGTAAGTATGCCTATGTTATTCACCTGTGAATGGTATTGGATCTATGAGCACGGGAGCCCATCACGGTCAGAGATAGCAGTTATATCCGTGTATTGTCCCATTTTGTCAGGTGATATCCCTTTATATAACTGT] [+] EMBL AK070377 [CCCGTGCGTGCGATTCCGCGTCTGCCGCTGCCGGCCGCCGACCGCCGACCGCCGGTGCGCACCTTCGCCGAGGGAGGAGGAGTCTGTTATCGAGCAATTTCAACAAGGGCGGGGCCTTAATCTCCTCGTGCAGCTTGTAAACCTCAGAGTAGGGGTGGGAAAGAAGTTTGGTGCGTGGATTAAATTAGCTGAAAGAGAAATTTGGGAGATGAGTGAGCTTGCGAACAAGTTCTTGGTTCTTCATCTAGATGGTGAAGGTGGTGGAGCAGATGATACAGAAGAAGCACTGATCCAAACATCTTCCAGCATCAAAGAGGCTGATGCCGGTGAAAATGCGCTGAGTGACACGTTGGTACTAAATTACGATGAAGGATCTCTTGTATCATCATCTGGTGATTACCAGATGCCTTTGGTGTGGATAGACTTGGAAATGACTGGTTTGGATGTTGCAAAGGATCGGATATTGGAGATAGCTTGCATCATAACGGACGGTAAACTTACAAAACAAATAGAGGGCCCTGATTTGGTTATAAATCAGAAGAAAGATCTGTTAGATAACATGGATGAATGGTGCAAAACTCATCATGCAGCTAGTGGATTGACACAGAGAGTACTACAGAGTACGATTTCAGAGCATGACGCAGAGACACAAGTGTTAGATTTTGTTAAGAAGCATGTTGGTTCATCTCCTCCATTAATAGCTGGGAATTCTGTTTATGTGGATTTACTATTTTTGAAGAATTATATGCCGCAGCTTGCAGCCATCTTCTCTCACGTTATTGTTGATGTGAGCAGTATAATGGCTTTGTGCATCAGATGGTACCCCAAAGAAAGGAAGCGAACTCCTCAAAAAGGGAAAAAACATAGGGCAATGAATGATATCAAAGAAAGCATCGCTGAACTGAAATACTACGAGGACAACATTTTCAAACCTCAAAAATCTAAGCAGTAGCTACATGGATGGAGCATGGTGGGCATCTTCATGATGGACAGCAAATCGATTCACATGCTAGCCATGATTGAAAATGGATTTTTCATATCAATATTTCCAAGTGTCACTTTGACCTCGTATTTAAATACGTGTTTTGTTTTCATGTCCATTGATCAGTGCCTGGATGTAAGTATGCCTATGTTATTCACCTGTGAATGGTATTGGATCTATGAGCACGGGAGCCCATCACGGTCAGAGATAGCAGTTATATCCGTGTATTGTCCCATTTTGTCAGGTGATATCCCTTTATATAACTGT] consensusID : consensus_5484#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 802 fasta sequence [GGCGTCCCCCGGCAGCGCTTCCTCCCTAAACCAACCTCAGCCTCGGTTGCTCCGTGCCCGTGCGTGCGATTCCGCGTCTGCCGCTGCCGGCCGCCGACCGCCGACCGCCGGTGCGCACCTTCGCCGAGGGAGGAGGAGTCTGTTATCGAGCAATTTCAACAAGGGCGGGGCCTTAATCTCCTCGTGCAGCTTGTAAACCTCAGAGTAGGGGTGGGAAAGAAGTTTGGTGCGTGGATTAAATTAGCTGAAAGAGAAATTTGGGAGATGAGTGAGCTTGCGAACAAGTTCTTGGTTCTTCATCTAGATGGTGAAGGTGGTGGAGCAGATGATACAGAAGAAGCACTGATCCAAACATCTTCCAGCATCAAAGAGGCTGATGCCGGTGAAAATGCGCTGAGTGACACGTTGGTACTAAATTACGATGAAGGATCTCTTGTATCATCATCTGGTGATTACCAGATGCCTTTGGTGTGGATAGACTTGGAAATGACTGGTTTGGATGTTGCAAAGGATCGGATATTGGAGATAGCTTGCATCATAACGGACGGGCCCTGATTTGGTTATAAATCAGAAGAAAGATCTGTTAGATAACATGGATGAATGGTGCAAAACTCATCATGCAGCTAGTGGATTGACACAGAGAGTACTACAGAGTACGATTTCAGAGCATGACGCAGAGACACAAGTGTTAGATTTTGTTAAGAAGCATGTTGGTTCATCTCCTCCATTAATAGCTGGGAATTCTGTTTATGTGGATTTACTATTTTTGAAGAATTATATGCCGCAGCTTGCAGCCATCTTC] [+] EMBL CB673773 [GGCGTCCCCCGGCAGCGCTTCCTCCCTAAACCAACCTCAGCCTCGGTTGCTCCGTGCCCGTGCGTGCGATTCCGCGTCTGCCGCTGCCGGCCGCCGACCGCCGACCGCCGGTGCGCACCTTCGCCGAGGGAGGAGGAGTCTGTTATCGAGCAATTTCAACAAGGGCGGGGCCTTAATCTCCTCGTGCAGCTTGTAAACCTCAGAGTAGGGGTGGGAAAGAAGTTTGGTGCGTGGATTAAATTAGCTGAAAGAGAAATTTGGGAGATGAGTGAGCTTGCGAACAAGTTCTTGGTTCTTCATCTAGATGGTGAAGGTGGTGGAGCAGATGATACAGAAGAAGCACTGATCCAAACATCTTCCAGCATCAAAGAGGCTGATGCCGGTGAAAATGCGCTGAGTGACACGTTGGTACTAAATTACGATGAAGGATCTCTTGTATCATCATCTGGTGATTACCAGATGCCTTTGGTGTGGATAGACTTGGAAATGACTGGTTTGGATGTTGCAAAGGATCGGATATTGGAGATAGCTTGCATCATAACGGACGGGCCCTGATTTGGTTATAAATCAGAAGAAAGATCTGTTAGATAACATGGATGAATGGTGCAAAACTCATCATGCAGCTAGTGGATTGACACAGAGAGTACTACAGAGTACGATTTCAGAGCATGACGCAGAGACACAAGTGTTAGATTTTGTTAAGAAGCATGTTGGTTCATCTCCTCCATTAATAGCTGGGAATTCTGTTTATGTGGATTTACTATTTTTGAAGAATTATATGCCGCAGCTTGCAGCCATCTTC] consensusID : consensus_5484#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [TCACATGGCTACCCATGGATGGGAAAATGGATTGTTTGCATGATCATATGTTCCCAAGTGTCACTGTTGGACCCTGCGTATGTTGAAATAACCGTGGTGTTGGGTTTTACATGTCCCTTGGATCCACGTGGCCTGATGGTAAGTATCGCCTAATGGTTATTGCACCTGTGAATGGTATTGGATCTATGAGCACGGGAGCCCATCACGGTCAGAGATACAGTTATATCCGTGTATTGTCCCATTTTGTCAGGTGATATCCCTTTATATAACTGTAATTTCTTGCACAAAGAAAA] [+] EMBL BI812021 [TCACATGGCTACCCATGGATGGGAAAATGGATTGTTTGCATGATCATATGTTCCCAAGTGTCACTGTTGGACCCTGCGTATGTTGAAATAACCGTGGTGTTGGGTTTTACATGTCCCTTGGATCCACGTGGCCTGATGGTAAGTATCGCCTAATGGTTATTGCACCTGTGAATGGTATTGGATCTATGAGCACGGGAGCCCATCACGGTCAGAGATACAGTTATATCCGTGTATTGTCCCATTTTGTCAGGTGATATCCCTTTATATAACTGTAATTTCTTGCACAAAGAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5484#0 --------------------------------------------------------CCCG 4 consensus_5484#1 GGCGTCCCCCGGCAGCGCTTCCTCCCTAAACCAACCTCAGCCTCGGTTGCTCCGTGCCCG 60 consensus_5484#2 ------------------------------------------------------------ consensus_5484#0 TGCGTGCGATTCCGCGTCTGCCGCTGCCGGCCGCCGACCGCCGACCGCCGGTGCGCACCT 64 consensus_5484#1 TGCGTGCGATTCCGCGTCTGCCGCTGCCGGCCGCCGACCGCCGACCGCCGGTGCGCACCT 120 consensus_5484#2 ------------------------------------------------------------ consensus_5484#0 TCGCCGAGGGAGGAGGAGTCTGTTATCGAGCAATTTCAACAAGGGCGGGGCCTTAATCTC 124 consensus_5484#1 TCGCCGAGGGAGGAGGAGTCTGTTATCGAGCAATTTCAACAAGGGCGGGGCCTTAATCTC 180 consensus_5484#2 ------------------------------------------------------------ consensus_5484#0 CTCGTGCAGCTTGTAAACCTCAGAGTAGGGGTGGGAAAGAAGTTTGGTGCGTGGATTAAA 184 consensus_5484#1 CTCGTGCAGCTTGTAAACCTCAGAGTAGGGGTGGGAAAGAAGTTTGGTGCGTGGATTAAA 240 consensus_5484#2 ------------------------------------------------------------ consensus_5484#0 TTAGCTGAAAGAGAAATTTGGGAGATGAGTGAGCTTGCGAACAAGTTCTTGGTTCTTCAT 244 consensus_5484#1 TTAGCTGAAAGAGAAATTTGGGAGATGAGTGAGCTTGCGAACAAGTTCTTGGTTCTTCAT 300 consensus_5484#2 ------------------------------------------------------------ consensus_5484#0 CTAGATGGTGAAGGTGGTGGAGCAGATGATACAGAAGAAGCACTGATCCAAACATCTTCC 304 consensus_5484#1 CTAGATGGTGAAGGTGGTGGAGCAGATGATACAGAAGAAGCACTGATCCAAACATCTTCC 360 consensus_5484#2 ------------------------------------------------------------ consensus_5484#0 AGCATCAAAGAGGCTGATGCCGGTGAAAATGCGCTGAGTGACACGTTGGTACTAAATTAC 364 consensus_5484#1 AGCATCAAAGAGGCTGATGCCGGTGAAAATGCGCTGAGTGACACGTTGGTACTAAATTAC 420 consensus_5484#2 ------------------------------------------------------------ consensus_5484#0 GATGAAGGATCTCTTGTATCATCATCTGGTGATTAC-CAGATGCCTTTGGTGTGGATAGA 423 consensus_5484#1 GATGAAGGATCTCTTGTATCATCATCTGGTGATTAC-CAGATGCCTTTGGTGTGGATAGA 479 consensus_5484#2 --------------------------------TCACATGGCTACCCATGG-ATGGGAAAA 27 * ** * * ** *** *** * * consensus_5484#0 CTTGGAAATGACTGGTTTGGATGTTGCAAAGGATCGGATATTGGAGATAGCTTGCATCAT 483 consensus_5484#1 CTTGGAAATGACTGGTTTGGATGTTGCAAAGGATCGGATATTGGAGATAGCTTGCATCAT 539 consensus_5484#2 TGGATTGTTTGCATGATCATATGTTCCCAAGTGTCAC-TGTTGGACCCTGCGTATGTTGA 86 * * * * ***** * *** ** * ***** ** * * consensus_5484#0 AACGGACGGTAAACTTACAAAACAAATAGAGGGCCCTGATTTGGTTATAAATCAGAAGAA 543 consensus_5484#1 AACGGACGG-----------------------GCCCTGATTTGGTTATAAATCAGAAGAA 576 consensus_5484#2 AATAACCGT----------------------GGTGTTGGGTT--TTACATGTCCCTTG-- 120 ** ** * ** ** *** * ** * consensus_5484#0 AGATCTGTTAGATAACATGGATGAATGGTGCAAAACTCATCATGCAGCTAGTGGATTGAC 603 consensus_5484#1 AGATCTGTTAGATAACATGGATGAATGGTGCAAAACTCATCATGCAGCTAGTGGATTGAC 636 consensus_5484#2 -GATCCACGTGGCCTGATGG-TAAGTATCGCCTAATGGTTATTGCACCT-GTGAAT-GGT 176 **** * **** * * * ** ** * **** ** *** ** * consensus_5484#0 ACAGAGAGTACTACAGAGTACGATTTCAGAGCATGACGCAGAGACACAAGTGTTAGATTT 663 consensus_5484#1 ACAGAGAGTACTACAGAGTACGATTTCAGAGCATGACGCAGAGACACAAGTGTTAGATTT 696 consensus_5484#2 ATTGGATCTAT----GAGCACGGGAGCCCATCACGGT-CAGAGATACA---GTTATATCC 228 * * ** *** *** * * ** * ****** *** **** ** consensus_5484#0 TGTTAAGAAGCATGTTGGTTCATCTCCTCCATTAATAGCTGGGAATTCTGTTTATGTGGA 723 consensus_5484#1 TGTTAAGAAGCATGTTGGTTCATCTCCTCCATTAATAGCTGGGAATTCTGTTTATGTGGA 756 consensus_5484#2 ---------GTGTATTGTCCCATTTTGTCAGGTGATA---------TCCCTTTATATAAC 270 * * *** *** * ** * *** ** ***** * consensus_5484#0 TTTACTATTTTTGAAGAATTATATGCCGCAGCTTGCAGCCATCTTCTCTCACGTTATTGT 783 consensus_5484#1 TTTACTATTTTTGAAGAATTATATGCCGCAGCTTGCAGCCATCTTC-------------- 802 consensus_5484#2 TGTAATTTCTTGCACAAAGAAAA------------------------------------- 293 * ** * * ** * ** * * consensus_5484#0 TGATGTGAGCAGTATAATGGCTTTGTGCATCAGATGGTACCCCAAAGAAAGGAAGCGAAC 843 consensus_5484#1 ------------------------------------------------------------ consensus_5484#2 ------------------------------------------------------------ consensus_5484#0 TCCTCAAAAAGGGAAAAAACATAGGGCAATGAATGATATCAAAGAAAGCATCGCTGAACT 903 consensus_5484#1 ------------------------------------------------------------ consensus_5484#2 ------------------------------------------------------------ consensus_5484#0 GAAATACTACGAGGACAACATTTTCAAACCTCAAAAATCTAAGCAGTAGCTACATGGATG 963 consensus_5484#1 ------------------------------------------------------------ consensus_5484#2 ------------------------------------------------------------ consensus_5484#0 GAGCATGGTGGGCATCTTCATGATGGACAGCAAATCGATTCACATGCTAGCCATGATTGA 1023 consensus_5484#1 ------------------------------------------------------------ consensus_5484#2 ------------------------------------------------------------ consensus_5484#0 AAATGGATTTTTCATATCAATATTTCCAAGTGTCACTTTGACCTCGTATTTAAATACGTG 1083 consensus_5484#1 ------------------------------------------------------------ consensus_5484#2 ------------------------------------------------------------ consensus_5484#0 TTTTGTTTTCATGTCCATTGATCAGTGCCTGGATGTAAGTATGCCTATGTTATTCACCTG 1143 consensus_5484#1 ------------------------------------------------------------ consensus_5484#2 ------------------------------------------------------------ consensus_5484#0 TGAATGGTATTGGATCTATGAGCACGGGAGCCCATCACGGTCAGAGATAGCAGTTATATC 1203 consensus_5484#1 ------------------------------------------------------------ consensus_5484#2 ------------------------------------------------------------ consensus_5484#0 CGTGTATTGTCCCATTTTGTCAGGTGATATCCCTTTATATAACTGT 1249 consensus_5484#1 ---------------------------------------------- consensus_5484#2 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||