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Oryza sativa
cluster # 5488 cluster # 5488       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5488#0 length = 914 sequences # 2  
consensus_5488#1 length = 796 sequences # 1  

consensusID : consensus_5488#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 914
fasta sequence
                              [CAGATCCGGTATAGAATTCCTCGCCTGCTGCTAAAGTCAGAAACTACCGCCAGTGCATCAAACCTCGAACCTCAATCAACCGCCAGCAATAAAACATCCACGCCCAACATGAGCACCAACACAGCATCCATCAACGCCGGACAGGGCGCCGGAAACACCTACCAGAACCCCAACATAAACCCTTCGACTTCGCAAGGCGTCGGCGCCGGCGCCGGGTCCATGAACCTGGGGCAGCAGCGCCTCGGCGGCGACAGCACGAACCCCGACGGCGCCTCCCGCGGCACCACGACGCAGAACAGCACCAGCGCCACGCAGCTGGGGAGCTCCCTGNGGCAGGAGGCGAGCGGCACCGGTGCTGCGGCAACCAGCGGCGTCGGGGCAAACAGCTCGACCGTCGGTGGCGGTGACGCCCCGACGTCGCGGACGGGTGGTATCGCTGGGCAGATCAAGGGGTGCTTT--GCCCAAGGACATGGTGTCNG--TAGATCCTGAGAGGAAAAGTC-ACTCTG-AGTGGACACCCATGG-GGGTGACTCGCAGGGCATGGCGATAGACAACNGCACGA-CACTTGTGGAGAGAGGGAATATG-CAAC-AGG-AG-TTG-CACGAAAAGAT-TNNT-ATGTA-TA-TATTT-ACGCCGGCTCGCCGGTCATATACGGCGTACAAACTCCGAGGATTCGGCCCTTCTATTTCTAAAAAAAAAAAAAAAAAAAAAAAAAACTTGGGGGCCGGCCACTCCCTATAGAGTATACCCGCCCGGCGTTTAAGGAAGGAAACCGGCCATAATCTGAAATCTTCCTTGTATGAGAGGCAACCTCCTCCATAAAAGAGAATGATTATTGGGGGGGTGGAAAACCACAACNTATACATCACCTTCCTCCATTNTTTTTTTCTGTGTGGTCGGAAAAGGGGGGGGTAAATATAAAA]

[+] EMBL AW155500             [CAGATCCGGTATAGAATTCCTCGCCTGCTGCTAAAGTCAGAAACTACCGCCAGTGCATCAAACCTCGAACCTCAATCAACCGCCAGCAATAAAACATCCACGCCCAACATGAGCACCAACACAGCATCCATCAACGCCGGACAGGGCGCCGGAAACACCTACCAGAACCCCAACATAAACCCTTCGACTTCGCAAGGCGTCGGCGCCGGCGCCGGGTCCATGAACCTGGGGCAGCAGCGCCTCGGCGGCGACAGCACGAACCCCGACGGCGCCTCCCGCGGCACCACGACGCAGAACAGCACCAGCGCCACGCAGCTGGGGAGCTCCCTGNGGCAGGAGGCGAGCGGCACCGGTGCTGCGGCAACCAGCGGCGTCGGGGCAAACAGCTCGACCGTCGGTGGCGGTGACGCCCCGACGTCGCGGACGGGTGGTATCGCTGGGCAGATCAAGGGGTGCTTT  GCCCAAGGACATGGTGTCNG  TAGATCCTGAGAGGAAAAGTC ACTCTG AGTGGACACCCATGG GGGTGACTCGCAGGGCATGGCGATAGACAACNGCACGA CACTTGTGGAGAGAGGGAATATG CAAC AGG AG TTG CACGAAAAGAT TNNT ATGTA TA TATTT ACGCCGGCTCGCCGGTCATATACGGCGTACAAACTCCGAGGATTCGGCCCTTCTATTTCTAAAAAAAAAAAAAAAAAAAAAAAAAACTTGGGGGCCGGCCACTCCCTATAGAGTATACCCGCCCGGCGTTTAAGGAAGGAAACCGGCCATAATCTGAAATCTTCCTTGTATGAGAGGCAACCTCCTCCATAAAAGAGAATGATTATTGGGGGGGTGGAAAACCACAACNTATACATCACCTTCCTCCATTNTTTTTTTCTGTGTGGTCGGAAAAGGGGGGGGTAAATATAAAA]
[+] EMBL AW155311             [CAGATCCGGTATAGAATTCCTCGCCTGCTGCTAAAGGCAGAAACTACCGCCAGTGCATCAAACCTCGAACCTCAATCAACCGCCAGCAATAAAACATCCACGCCCAACATGAGCACCAACACAGCATCCATCAACGCCGGACAGGGCGCCGGAAACACCTACCAGAACCCCAACATAAACCCTTCGACTTCGCAAGGCGTCGGCGCCGGCGCCGGGTCCATGAACCTGGGGCAGCAGCGCCTCGGCGGCGACAGCACGAACCCCGACGGCGCCTCCCGCGGCACCACGACGCAGAACAGCACCAGCGCCACGCAGCTGGGGAGCTCCCTGGGGCAGGAGGCGAGCGGCACCGGTGCTGCGGCAACCAGCGGCGTCGGGGCAAACAGCTCGACCGTCGGTGGCGGTGACGCCCCGACGTCTCGGACGGGTGGTATCGCTGGGCCAAACAAGGGGTGGTTTTGGCCCAAGGCCTGGGGGTCGGGAGAGATCCTGAGAGGAAAAGTCAACTCTGCAGGGGACA CCATGGCGGGTGACTCGCAAGGCATGGCGATAGACAAGCGCACGACCACTGCTGGAGAGAGGGAATATGCCAACAAGGAAGTTTGCCAAGAGGAGGTATANTCGGGTAGTATTATTTAACGCCGGgct                                                                                                                                                                                                                                                                                           ]


>consensus_5488#0 CAGATCCGGTATAGAATTCCTCGCCTGCTGCTAAAGTCAGAAACTACCGCCAGTGCATCA AACCTCGAACCTCAATCAACCGCCAGCAATAAAACATCCACGCCCAACATGAGCACCAAC ACAGCATCCATCAACGCCGGACAGGGCGCCGGAAACACCTACCAGAACCCCAACATAAAC CCTTCGACTTCGCAAGGCGTCGGCGCCGGCGCCGGGTCCATGAACCTGGGGCAGCAGCGC CTCGGCGGCGACAGCACGAACCCCGACGGCGCCTCCCGCGGCACCACGACGCAGAACAGC ACCAGCGCCACGCAGCTGGGGAGCTCCCTGNGGCAGGAGGCGAGCGGCACCGGTGCTGCG GCAACCAGCGGCGTCGGGGCAAACAGCTCGACCGTCGGTGGCGGTGACGCCCCGACGTCG CGGACGGGTGGTATCGCTGGGCAGATCAAGGGGTGCTTTGCCCAAGGACATGGTGTCNGT AGATCCTGAGAGGAAAAGTCACTCTGAGTGGACACCCATGGGGGTGACTCGCAGGGCATG GCGATAGACAACNGCACGACACTTGTGGAGAGAGGGAATATGCAACAGGAGTTGCACGAA AAGATTNNTATGTATATATTTACGCCGGCTCGCCGGTCATATACGGCGTACAAACTCCGA GGATTCGGCCCTTCTATTTCTAAAAAAAAAAAAAAAAAAAAAAAAAACTTGGGGGCCGGC CACTCCCTATAGAGTATACCCGCCCGGCGTTTAAGGAAGGAAACCGGCCATAATCTGAAA TCTTCCTTGTATGAGAGGCAACCTCCTCCATAAAAGAGAATGATTATTGGGGGGGTGGAA AACCACAACNTATACATCACCTTCCTCCATTNTTTTTTTCTGTGTGGTCGGAAAAGGGGG GGGTAAATATAAAA



consensusID : consensus_5488#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 796
fasta sequence
                              [GCTAAAGTCAGAAACTACCGCCAGTGCATCAAACCTCGAACCTCAATCAACCGCCAGCAATAAAACATCCACGCCCAACATGAGCACCAACACAGCATCCATCAACGCCGGACAGGGCGCCGGAAACACCTACCAGAACCCCAACATAAACCCTTCGACTTCTCAAGGCGTCGGCGCCGGCGCCGGGTCCATGAACCTGGGGCAGCAGCGCCTCGGCGGCGACAGCACGAACCCCGACGGCGCCTCCCGCGGCACCACGACGCAGAACAGAACCAGCGCCACGCAGCTGGGGAGCTACCTGTGGCAGGAGGCGAGCGGCACCGGTGCTGCGGCAACCAACGGCGTCGGTGCAAACAGCTACACCAGCCGTGGGGTGACCACCCACAATCCGACGGGGGTATTGTGGGCAGATCAAGGTGTTTTGCCAAGACATGGTGCNGTGGATCTAGAAGAAAGAACTCTGCGTGACACATGGGGGGATCCCGGCATGCGATAACAACCCCACCACTCTGGAGAGGAGATCCCAAGAGTGCCCAAAAAGTTTTTTTTATATTACCCGGTCCGGCCGCATACCGCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGCGCCATCCATTAGATTAACCCCCCCGCGTTAACAGGAGAAAACGGCCAAATGGCACCCCCTCGGGGAAAAACCCCCCCCCCCCCCAAAAACCCCCGCTCCCGGGGGGGGGGCCCCCCCCCCCTTTTTTTTTTTTNTTTNTGNGNTNNNGNNNNNGGNTNTNTGGGTGNTGTATTTTTTATAA]

[+] EMBL AW155462             [GCTAAAGTCAGAAACTACCGCCAGTGCATCAAACCTCGAACCTCAATCAACCGCCAGCAATAAAACATCCACGCCCAACATGAGCACCAACACAGCATCCATCAACGCCGGACAGGGCGCCGGAAACACCTACCAGAACCCCAACATAAACCCTTCGACTTCTCAAGGCGTCGGCGCCGGCGCCGGGTCCATGAACCTGGGGCAGCAGCGCCTCGGCGGCGACAGCACGAACCCCGACGGCGCCTCCCGCGGCACCACGACGCAGAACAGAACCAGCGCCACGCAGCTGGGGAGCTACCTGTGGCAGGAGGCGAGCGGCACCGGTGCTGCGGCAACCAACGGCGTCGGTGCAAACAGCTACACCAGCCGTGGGGTGACCACCCACAATCCGACGGGGGTATTGTGGGCAGATCAAGGTGTTTTGCCAAGACATGGTGCNGTGGATCTAGAAGAAAGAACTCTGCGTGACACATGGGGGGATCCCGGCATGCGATAACAACCCCACCACTCTGGAGAGGAGATCCCAAGAGTGCCCAAAAAGTTTTTTTTATATTACCCGGTCCGGCCGCATACCGCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGCGCCATCCATTAGATTAACCCCCCCGCGTTAACAGGAGAAAACGGCCAAATGGCACCCCCTCGGGGAAAAACCCCCCCCCCCCCCAAAAACCCCCGCTCCCGGGGGGGGGGCCCCCCCCCCCTTTTTTTTTTTTNTTTNTGNGNTNNNGNNNNNGGNTNTNTGGGTGNTGTATTTTTTATAA]


>consensus_5488#1 GCTAAAGTCAGAAACTACCGCCAGTGCATCAAACCTCGAACCTCAATCAACCGCCAGCAA TAAAACATCCACGCCCAACATGAGCACCAACACAGCATCCATCAACGCCGGACAGGGCGC CGGAAACACCTACCAGAACCCCAACATAAACCCTTCGACTTCTCAAGGCGTCGGCGCCGG CGCCGGGTCCATGAACCTGGGGCAGCAGCGCCTCGGCGGCGACAGCACGAACCCCGACGG CGCCTCCCGCGGCACCACGACGCAGAACAGAACCAGCGCCACGCAGCTGGGGAGCTACCT GTGGCAGGAGGCGAGCGGCACCGGTGCTGCGGCAACCAACGGCGTCGGTGCAAACAGCTA CACCAGCCGTGGGGTGACCACCCACAATCCGACGGGGGTATTGTGGGCAGATCAAGGTGT TTTGCCAAGACATGGTGCNGTGGATCTAGAAGAAAGAACTCTGCGTGACACATGGGGGGA TCCCGGCATGCGATAACAACCCCACCACTCTGGAGAGGAGATCCCAAGAGTGCCCAAAAA GTTTTTTTTATATTACCCGGTCCGGCCGCATACCGCGAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAGGGGCGCCATCCATTAGATTAACCCCCCCGCGTTAACAGGAGAAAACGGC CAAATGGCACCCCCTCGGGGAAAAACCCCCCCCCCCCCCAAAAACCCCCGCTCCCGGGGG GGGGGCCCCCCCCCCCTTTTTTTTTTTTNTTTNTGNGNTNNNGNNNNNGGNTNTNTGGGT GNTGTATTTTTTATAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5488#0      CAGATCCGGTATAGAATTCCTCGCCTGCTGCTAAAGTCAGAAACTACCGCCAGTGCATCA 60
consensus_5488#1      -----------------------------GCTAAAGTCAGAAACTACCGCCAGTGCATCA 31
                                                   *******************************

consensus_5488#0      AACCTCGAACCTCAATCAACCGCCAGCAATAAAACATCCACGCCCAACATGAGCACCAAC 120
consensus_5488#1      AACCTCGAACCTCAATCAACCGCCAGCAATAAAACATCCACGCCCAACATGAGCACCAAC 91
                      ************************************************************

consensus_5488#0      ACAGCATCCATCAACGCCGGACAGGGCGCCGGAAACACCTACCAGAACCCCAACATAAAC 180
consensus_5488#1      ACAGCATCCATCAACGCCGGACAGGGCGCCGGAAACACCTACCAGAACCCCAACATAAAC 151
                      ************************************************************

consensus_5488#0      CCTTCGACTTCGCAAGGCGTCGGCGCCGGCGCCGGGTCCATGAACCTGGGGCAGCAGCGC 240
consensus_5488#1      CCTTCGACTTCTCAAGGCGTCGGCGCCGGCGCCGGGTCCATGAACCTGGGGCAGCAGCGC 211
                      *********** ************************************************

consensus_5488#0      CTCGGCGGCGACAGCACGAACCCCGACGGCGCCTCCCGCGGCACCACGACGCAGAACAGC 300
consensus_5488#1      CTCGGCGGCGACAGCACGAACCCCGACGGCGCCTCCCGCGGCACCACGACGCAGAACAGA 271
                      *********************************************************** 

consensus_5488#0      ACCAGCGCCACGCAGCTGGGGAGCTCCCTGNGGCAGGAGGCGAGCGGCACCGGTGCTGCG 360
consensus_5488#1      ACCAGCGCCACGCAGCTGGGGAGCTACCTGTGGCAGGAGGCGAGCGGCACCGGTGCTGCG 331
                      ************************* **** *****************************

consensus_5488#0      GCAACCAGCGGCGTCGGGGCAAACAGCTCGACCGTCGGTGGCGGTGACGCCCCGACGTCG 420
consensus_5488#1      GCAACCAACGGCGTCGGTGCAAACAGCTACACCAGCCGTGG-GGTGACCACCCACAATCC 390
                      ******* ********* **********  ***  * **** ******  ***    ** 

consensus_5488#0      CGGACGGGTGGTATCGCTGGGCAGATCAAGGGGTGCTTTGCCCAAGGACATGGTGTCNGT 480
consensus_5488#1      --GACGGG-GGTATTG-TGGGCAGATCAAGG--TGTTTTGCC--AAGACATGGTG-CNGT 441
                        ****** ***** * **************  ** ******  * ********* ****

consensus_5488#0      AGATCCTGAGAGGAAAAGTCACTCTGAGTGGACACCCATGGGGGTGACTCGCAGGGCATG 540
consensus_5488#1      GGATCT--AGAAGAAAGA--ACTCTGCGTG---ACACATGGGGGGATCCCG----GCATG 490
                       ****   *** ****    ****** ***   ** ********   * **    *****

consensus_5488#0      GCGATAGACAACNGCACGACACTTGTGGAGAGAGGGAATATGCAACAGGAGTTGCACGAA 600
consensus_5488#1      -CGATA-ACAACCCCACCACTCT-----GGAGAGGAGATCC----CAAGAGT-GCCCAAA 538
                       ***** *****  *** ** **      ******  **      ** **** ** * **

consensus_5488#0      AAGATTNNTATGTATATATTTACGCCGGCTCGCCGGTCATATACGGCGTACAAACTCCGA 660
consensus_5488#1      AAGTTTTTTTTATAT-----TAC-CCGGT---CCGGCCGCATACCGCGAAAAAA------ 583
                      *** **  * * ***     *** ****    **** *  **** *** * ***      

consensus_5488#0      GGATTCGGCCCTTCTATTTCTAAAAAAAAAAAAAAAAAAAAAAAAAACTTGGGGGCCGGC 720
consensus_5488#1      ----------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGCGCCATC 621
                                            *************************   *** ***  *

consensus_5488#0      CACTCCCTATAGAGTATACCCGCCCGGCGTTTAAGGAAGGAAACCGGCCATAATCTGAAA 780
consensus_5488#1      CATT--------AGATTAACCCCCCCGCGTTAACAGGAGAAAAC-GGCCAAA---TGGCA 669
                      ** *        **  ** ** *** ***** *  * ** **** ***** *   **  *

consensus_5488#0      TCTTCCTTGTATGAGAGGCAACCTCCTCCATAAAAGAGAATGATTATTGGGGGGGTGGAA 840
consensus_5488#1      CC--CCCTCGGGGAAAAACCCCCCCCCCCCCCAAAAACCCCCGCTCCCGGGGGGGGGG-- 725
                       *  ** *    ** *  *  ** ** **   *** *       *   ******* **  

consensus_5488#0      AACCACAACNTATACATCACCTTCCTCCATTNTTTTTTTCTGTGTGGTCGGAAAAGGGGG 900
consensus_5488#1      -CCCCCCCCCCCTTTTTTTTTTTTNTTTNTGNGNTNNNGNNNNNGGNTNTNTGGGTGNTG 784
                        ** *  *   *   *    **  *   * *  *          * *        *  *

consensus_5488#0      GGGTAAATATAAAA 914
consensus_5488#1      TATTTTTTATAA-- 796
                         *   *****  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)