These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5488#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 914 fasta sequence [CAGATCCGGTATAGAATTCCTCGCCTGCTGCTAAAGTCAGAAACTACCGCCAGTGCATCAAACCTCGAACCTCAATCAACCGCCAGCAATAAAACATCCACGCCCAACATGAGCACCAACACAGCATCCATCAACGCCGGACAGGGCGCCGGAAACACCTACCAGAACCCCAACATAAACCCTTCGACTTCGCAAGGCGTCGGCGCCGGCGCCGGGTCCATGAACCTGGGGCAGCAGCGCCTCGGCGGCGACAGCACGAACCCCGACGGCGCCTCCCGCGGCACCACGACGCAGAACAGCACCAGCGCCACGCAGCTGGGGAGCTCCCTGNGGCAGGAGGCGAGCGGCACCGGTGCTGCGGCAACCAGCGGCGTCGGGGCAAACAGCTCGACCGTCGGTGGCGGTGACGCCCCGACGTCGCGGACGGGTGGTATCGCTGGGCAGATCAAGGGGTGCTTT--GCCCAAGGACATGGTGTCNG--TAGATCCTGAGAGGAAAAGTC-ACTCTG-AGTGGACACCCATGG-GGGTGACTCGCAGGGCATGGCGATAGACAACNGCACGA-CACTTGTGGAGAGAGGGAATATG-CAAC-AGG-AG-TTG-CACGAAAAGAT-TNNT-ATGTA-TA-TATTT-ACGCCGGCTCGCCGGTCATATACGGCGTACAAACTCCGAGGATTCGGCCCTTCTATTTCTAAAAAAAAAAAAAAAAAAAAAAAAAACTTGGGGGCCGGCCACTCCCTATAGAGTATACCCGCCCGGCGTTTAAGGAAGGAAACCGGCCATAATCTGAAATCTTCCTTGTATGAGAGGCAACCTCCTCCATAAAAGAGAATGATTATTGGGGGGGTGGAAAACCACAACNTATACATCACCTTCCTCCATTNTTTTTTTCTGTGTGGTCGGAAAAGGGGGGGGTAAATATAAAA] [+] EMBL AW155500 [CAGATCCGGTATAGAATTCCTCGCCTGCTGCTAAAGTCAGAAACTACCGCCAGTGCATCAAACCTCGAACCTCAATCAACCGCCAGCAATAAAACATCCACGCCCAACATGAGCACCAACACAGCATCCATCAACGCCGGACAGGGCGCCGGAAACACCTACCAGAACCCCAACATAAACCCTTCGACTTCGCAAGGCGTCGGCGCCGGCGCCGGGTCCATGAACCTGGGGCAGCAGCGCCTCGGCGGCGACAGCACGAACCCCGACGGCGCCTCCCGCGGCACCACGACGCAGAACAGCACCAGCGCCACGCAGCTGGGGAGCTCCCTGNGGCAGGAGGCGAGCGGCACCGGTGCTGCGGCAACCAGCGGCGTCGGGGCAAACAGCTCGACCGTCGGTGGCGGTGACGCCCCGACGTCGCGGACGGGTGGTATCGCTGGGCAGATCAAGGGGTGCTTT GCCCAAGGACATGGTGTCNG TAGATCCTGAGAGGAAAAGTC ACTCTG AGTGGACACCCATGG GGGTGACTCGCAGGGCATGGCGATAGACAACNGCACGA CACTTGTGGAGAGAGGGAATATG CAAC AGG AG TTG CACGAAAAGAT TNNT ATGTA TA TATTT ACGCCGGCTCGCCGGTCATATACGGCGTACAAACTCCGAGGATTCGGCCCTTCTATTTCTAAAAAAAAAAAAAAAAAAAAAAAAAACTTGGGGGCCGGCCACTCCCTATAGAGTATACCCGCCCGGCGTTTAAGGAAGGAAACCGGCCATAATCTGAAATCTTCCTTGTATGAGAGGCAACCTCCTCCATAAAAGAGAATGATTATTGGGGGGGTGGAAAACCACAACNTATACATCACCTTCCTCCATTNTTTTTTTCTGTGTGGTCGGAAAAGGGGGGGGTAAATATAAAA] [+] EMBL AW155311 [CAGATCCGGTATAGAATTCCTCGCCTGCTGCTAAAGGCAGAAACTACCGCCAGTGCATCAAACCTCGAACCTCAATCAACCGCCAGCAATAAAACATCCACGCCCAACATGAGCACCAACACAGCATCCATCAACGCCGGACAGGGCGCCGGAAACACCTACCAGAACCCCAACATAAACCCTTCGACTTCGCAAGGCGTCGGCGCCGGCGCCGGGTCCATGAACCTGGGGCAGCAGCGCCTCGGCGGCGACAGCACGAACCCCGACGGCGCCTCCCGCGGCACCACGACGCAGAACAGCACCAGCGCCACGCAGCTGGGGAGCTCCCTGGGGCAGGAGGCGAGCGGCACCGGTGCTGCGGCAACCAGCGGCGTCGGGGCAAACAGCTCGACCGTCGGTGGCGGTGACGCCCCGACGTCTCGGACGGGTGGTATCGCTGGGCCAAACAAGGGGTGGTTTTGGCCCAAGGCCTGGGGGTCGGGAGAGATCCTGAGAGGAAAAGTCAACTCTGCAGGGGACA CCATGGCGGGTGACTCGCAAGGCATGGCGATAGACAAGCGCACGACCACTGCTGGAGAGAGGGAATATGCCAACAAGGAAGTTTGCCAAGAGGAGGTATANTCGGGTAGTATTATTTAACGCCGGgct ] consensusID : consensus_5488#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 796 fasta sequence [GCTAAAGTCAGAAACTACCGCCAGTGCATCAAACCTCGAACCTCAATCAACCGCCAGCAATAAAACATCCACGCCCAACATGAGCACCAACACAGCATCCATCAACGCCGGACAGGGCGCCGGAAACACCTACCAGAACCCCAACATAAACCCTTCGACTTCTCAAGGCGTCGGCGCCGGCGCCGGGTCCATGAACCTGGGGCAGCAGCGCCTCGGCGGCGACAGCACGAACCCCGACGGCGCCTCCCGCGGCACCACGACGCAGAACAGAACCAGCGCCACGCAGCTGGGGAGCTACCTGTGGCAGGAGGCGAGCGGCACCGGTGCTGCGGCAACCAACGGCGTCGGTGCAAACAGCTACACCAGCCGTGGGGTGACCACCCACAATCCGACGGGGGTATTGTGGGCAGATCAAGGTGTTTTGCCAAGACATGGTGCNGTGGATCTAGAAGAAAGAACTCTGCGTGACACATGGGGGGATCCCGGCATGCGATAACAACCCCACCACTCTGGAGAGGAGATCCCAAGAGTGCCCAAAAAGTTTTTTTTATATTACCCGGTCCGGCCGCATACCGCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGCGCCATCCATTAGATTAACCCCCCCGCGTTAACAGGAGAAAACGGCCAAATGGCACCCCCTCGGGGAAAAACCCCCCCCCCCCCCAAAAACCCCCGCTCCCGGGGGGGGGGCCCCCCCCCCCTTTTTTTTTTTTNTTTNTGNGNTNNNGNNNNNGGNTNTNTGGGTGNTGTATTTTTTATAA] [+] EMBL AW155462 [GCTAAAGTCAGAAACTACCGCCAGTGCATCAAACCTCGAACCTCAATCAACCGCCAGCAATAAAACATCCACGCCCAACATGAGCACCAACACAGCATCCATCAACGCCGGACAGGGCGCCGGAAACACCTACCAGAACCCCAACATAAACCCTTCGACTTCTCAAGGCGTCGGCGCCGGCGCCGGGTCCATGAACCTGGGGCAGCAGCGCCTCGGCGGCGACAGCACGAACCCCGACGGCGCCTCCCGCGGCACCACGACGCAGAACAGAACCAGCGCCACGCAGCTGGGGAGCTACCTGTGGCAGGAGGCGAGCGGCACCGGTGCTGCGGCAACCAACGGCGTCGGTGCAAACAGCTACACCAGCCGTGGGGTGACCACCCACAATCCGACGGGGGTATTGTGGGCAGATCAAGGTGTTTTGCCAAGACATGGTGCNGTGGATCTAGAAGAAAGAACTCTGCGTGACACATGGGGGGATCCCGGCATGCGATAACAACCCCACCACTCTGGAGAGGAGATCCCAAGAGTGCCCAAAAAGTTTTTTTTATATTACCCGGTCCGGCCGCATACCGCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGCGCCATCCATTAGATTAACCCCCCCGCGTTAACAGGAGAAAACGGCCAAATGGCACCCCCTCGGGGAAAAACCCCCCCCCCCCCCAAAAACCCCCGCTCCCGGGGGGGGGGCCCCCCCCCCCTTTTTTTTTTTTNTTTNTGNGNTNNNGNNNNNGGNTNTNTGGGTGNTGTATTTTTTATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5488#0 CAGATCCGGTATAGAATTCCTCGCCTGCTGCTAAAGTCAGAAACTACCGCCAGTGCATCA 60 consensus_5488#1 -----------------------------GCTAAAGTCAGAAACTACCGCCAGTGCATCA 31 ******************************* consensus_5488#0 AACCTCGAACCTCAATCAACCGCCAGCAATAAAACATCCACGCCCAACATGAGCACCAAC 120 consensus_5488#1 AACCTCGAACCTCAATCAACCGCCAGCAATAAAACATCCACGCCCAACATGAGCACCAAC 91 ************************************************************ consensus_5488#0 ACAGCATCCATCAACGCCGGACAGGGCGCCGGAAACACCTACCAGAACCCCAACATAAAC 180 consensus_5488#1 ACAGCATCCATCAACGCCGGACAGGGCGCCGGAAACACCTACCAGAACCCCAACATAAAC 151 ************************************************************ consensus_5488#0 CCTTCGACTTCGCAAGGCGTCGGCGCCGGCGCCGGGTCCATGAACCTGGGGCAGCAGCGC 240 consensus_5488#1 CCTTCGACTTCTCAAGGCGTCGGCGCCGGCGCCGGGTCCATGAACCTGGGGCAGCAGCGC 211 *********** ************************************************ consensus_5488#0 CTCGGCGGCGACAGCACGAACCCCGACGGCGCCTCCCGCGGCACCACGACGCAGAACAGC 300 consensus_5488#1 CTCGGCGGCGACAGCACGAACCCCGACGGCGCCTCCCGCGGCACCACGACGCAGAACAGA 271 *********************************************************** consensus_5488#0 ACCAGCGCCACGCAGCTGGGGAGCTCCCTGNGGCAGGAGGCGAGCGGCACCGGTGCTGCG 360 consensus_5488#1 ACCAGCGCCACGCAGCTGGGGAGCTACCTGTGGCAGGAGGCGAGCGGCACCGGTGCTGCG 331 ************************* **** ***************************** consensus_5488#0 GCAACCAGCGGCGTCGGGGCAAACAGCTCGACCGTCGGTGGCGGTGACGCCCCGACGTCG 420 consensus_5488#1 GCAACCAACGGCGTCGGTGCAAACAGCTACACCAGCCGTGG-GGTGACCACCCACAATCC 390 ******* ********* ********** *** * **** ****** *** ** consensus_5488#0 CGGACGGGTGGTATCGCTGGGCAGATCAAGGGGTGCTTTGCCCAAGGACATGGTGTCNGT 480 consensus_5488#1 --GACGGG-GGTATTG-TGGGCAGATCAAGG--TGTTTTGCC--AAGACATGGTG-CNGT 441 ****** ***** * ************** ** ****** * ********* **** consensus_5488#0 AGATCCTGAGAGGAAAAGTCACTCTGAGTGGACACCCATGGGGGTGACTCGCAGGGCATG 540 consensus_5488#1 GGATCT--AGAAGAAAGA--ACTCTGCGTG---ACACATGGGGGGATCCCG----GCATG 490 **** *** **** ****** *** ** ******** * ** ***** consensus_5488#0 GCGATAGACAACNGCACGACACTTGTGGAGAGAGGGAATATGCAACAGGAGTTGCACGAA 600 consensus_5488#1 -CGATA-ACAACCCCACCACTCT-----GGAGAGGAGATCC----CAAGAGT-GCCCAAA 538 ***** ***** *** ** ** ****** ** ** **** ** * ** consensus_5488#0 AAGATTNNTATGTATATATTTACGCCGGCTCGCCGGTCATATACGGCGTACAAACTCCGA 660 consensus_5488#1 AAGTTTTTTTTATAT-----TAC-CCGGT---CCGGCCGCATACCGCGAAAAAA------ 583 *** ** * * *** *** **** **** * **** *** * *** consensus_5488#0 GGATTCGGCCCTTCTATTTCTAAAAAAAAAAAAAAAAAAAAAAAAAACTTGGGGGCCGGC 720 consensus_5488#1 ----------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGCGCCATC 621 ************************* *** *** * consensus_5488#0 CACTCCCTATAGAGTATACCCGCCCGGCGTTTAAGGAAGGAAACCGGCCATAATCTGAAA 780 consensus_5488#1 CATT--------AGATTAACCCCCCCGCGTTAACAGGAGAAAAC-GGCCAAA---TGGCA 669 ** * ** ** ** *** ***** * * ** **** ***** * ** * consensus_5488#0 TCTTCCTTGTATGAGAGGCAACCTCCTCCATAAAAGAGAATGATTATTGGGGGGGTGGAA 840 consensus_5488#1 CC--CCCTCGGGGAAAAACCCCCCCCCCCCCCAAAAACCCCCGCTCCCGGGGGGGGGG-- 725 * ** * ** * * ** ** ** *** * * ******* ** consensus_5488#0 AACCACAACNTATACATCACCTTCCTCCATTNTTTTTTTCTGTGTGGTCGGAAAAGGGGG 900 consensus_5488#1 -CCCCCCCCCCCTTTTTTTTTTTTNTTTNTGNGNTNNNGNNNNNGGNTNTNTGGGTGNTG 784 ** * * * * ** * * * * * * * * consensus_5488#0 GGGTAAATATAAAA 914 consensus_5488#1 TATTTTTTATAA-- 796 * ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||