cluster # 5496

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Oryza sativa
cluster # 5496 cluster # 5496 Sequences # 3 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5496#0 length = 763 sequences # 3

consensusID : consensus_5496#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 763
fasta sequence

                              [TTTTTTTTTTTTTTTT----C---TAGAGTTTGTCTCGCACGAAGGCAAGACCCACAACTTTATTATCAAACTTAATATAACATGTTCTCTTGGTAAAATGACAGTCATAACCTGTCTCTGCTAAAACTCTAACTGAAATAAGATTTCTCTTAATAGATGGAG-CAACTAA-AACATTA-TTTAAAATT-AAATTGCAGCCGCTAGGGAGTCT-AAGTGTGAGGCCT-CC-AACAGCCCTCACTTCAATCTCCGCTCC-ATC-GGCTACTCTTA-GGTTTTGCTCCCCTCTTGCTACCTTCCGCACGGTACGGAATTCCTTTCTTAGCTAGCCACGCTTTGAAACGTGGGCAATTTCTTTGCCAATGTCCATTAGTGTCGCAAAAAGGACAATATGGACTCTTAGGAGGACCAGCTGAAGTTTGAGCAGTAGAGTTATTCCCTCCATACTTCTGAGATTGGTCCGGCTTATTCTTCTTACTGTTAGAGGATTCTCCTTGATACATCTTTCTTTTGCCTCTGTTATTGGCATTAGCGAGGTTGAGTTGGTCTTTAAGCTTTTGTTTCTCAGCTCTCTAACGCTCTTCCTCTTCCACTGAATGTGAAATTAGCTCCTGCACCAGAAGCCATC-GATTCGGGTTTCTTCCTTTCTTTTCTTCTTCTTTGGGCTTTGCTTTTCTTCTTCTCGCTAGATGGCGCCGGTGACTGAGATAGCGTCACGAACCCCTTCCAGTGCGATTGCCGATCGGAGGCTAATTAGGGTTTAGNATTTTCCNAGATA]

[+] EMBL CA759243             [TTTTTTTTTTTTTTTTAGAGCAAATAGAGTTTGTCTCGCACGAAGGCAAGACCCACAACTTTATTATCAAACTTAATATAACATGTTCTCTTGGTAAAATGACAGTCATAACCTGTCTCTGCTAAAACTCTAACTGAAATAAGATTTCTCTTAATAGATGGAG CAACTAA AACATTA TTTAAAATT AAATTGCAGCCGCTAGGGAGTCT AAGTGTGAGGCCT CC AACAGCCCTCACTTCAATCTCCGCTCC ATC GGCTACTCTTA GGTTTTGCTCCCCTCTTGCTACCTTCCGCACGGTACGGAATTCCTTTCTTAGCTAGCCACGCTTTGAAACGTGGGCAATTTCTTTGCCAATGTCCATTAGTGTCGCAAAAAGGACAATATGGACTCTTAGGAGGACCAGCTGAAGTTTGAGCAGTAGAGTTATTCCCTCCATACTTCTGAGATTGGTCCGGCTTATTCTTCTTACTGTTAGAGGATTCTCCTTGATACATCTTTCTTTTGCCTCTGTTATTGGCATTAGCGAGGTTGAGTTGGTCTTTAAGCTTTTGTTTCTCAGCTCTCTAACGCTCTTCCTCTTCCACTGAATGTGAAATTAGCTCCTGCACCAGAAGCCATC GATTCGGGTTTCTTCCTTTCTTTTC                                                                                                                             ]
[+] EMBL CA759244             [ TTTTTTTTTTTTTTT    C   TAAAGTTTGTCTCGCACGAAGGCAAGACCCACAACTTTATTATCAAACTTAATATAACATGTTCTCTTGGTAAAATGACAGTCATAACCTGTCTCTGCTAAAACTCTAACTGAAATAAAATTTCTCTTAATAGATGGAG CAACTAA AACATTA TTTAAAATT AAATTGCAGCCGCTAGGGAGTCT AAGTGTGAGGCCT CC AACAGCCCTCACTTCAATCTCCGCTCC ATC GGCTACTCTTA GGTTTTGCTCCCCTCTTGCTACCTTCCGCACGGTACGGAATTCCTTTCTTAGCTAGCCACGCTTTGAAACGTGGGCAATTTCTTTGCCAATGTCCATTAGTGTCGCAAAAAGGACAATATGGACTCTTAGGAGGACCAGCTGAAGTTTGAGCAGTAAAGTTATTCCCTCCATACTTCTAAGATTGGCCCGGCTTATTCTTCTTACTGTTAGAGGATTCTCCTTGATACATCTTTCTTTTGCCTCTGTTATTGGCATTAGCGAGGTTGAGTTGGTCTCTAAGCTTTTGTTTCTCAGCTCTCTAACGCTCTTCCTCTTCCACTGAATGTGAAATTAGCTCCTGCACCAGAAGCCATCGGATTCGGNTTTCTTCCTTTCTTTTCTTCTTCTTTGGGCTTTGCTTTTCTT                                                                                                    ]
[-] EMBL CA766439             [                                                                                                                                    agTGAAATAAGANTTCTNTNAATAGATGGAGNGAANTAAGNCCNTTANTTTAAAATTAAAANTGCAGCCGCTAGGGAGTNTNAAGTGTGAGGCCTNCCAAACAGCCCNCACTTCAATCTCCGCTCCAATCGGGNTANTCTTAGGGTTTTGCTCCCCTCTTGCTACCTTCCGCNCGGTACGGAATTCCTTTCTTAGCTAGCCACGCTTTGAAACGTGGGCAATTTCTTTGCCAATGTCCATTAGTGTCGCAGAAAGGACAATATGGACTCTTAGGAGGACCAGCTGAAGTTTGAGCAGTAGAGTTATTCCCTCCATACTTCTGAGATTGGTCCGGCTTATTCTTCTTACTGTTAGAGGATTCTCCTTGATACGTCTTTCTTTTGCCTCTGTTATTGGCATTAGCGAGGTTGAGTTGGTCTTTAAGCTTTTGTTTCCCAGCTCTCTAACGCTCTTCCTCTTCCACTGAATGTGAAATTAGCNCCTGCACCAGAAGCCATC GATTCGGTTTTCTTCCTTTCTTTTCTTCTTCTTTTGGCTTTGCTTTTCTTCTTCTCGCTAGATGGCGCCGGTGACTGAGATAGCGTCACGAACCCCTTCCAGTGCGATTGCCGATCGGAGGCTAATTAGGGTTTAGNATTTTCCNAGATA]




>consensus_5496#0
TTTTTTTTTTTTTTTTCTAGAGTTTGTCTCGCACGAAGGCAAGACCCACAACTTTATTAT
CAAACTTAATATAACATGTTCTCTTGGTAAAATGACAGTCATAACCTGTCTCTGCTAAAA
CTCTAACTGAAATAAGATTTCTCTTAATAGATGGAGCAACTAAAACATTATTTAAAATTA
AATTGCAGCCGCTAGGGAGTCTAAGTGTGAGGCCTCCAACAGCCCTCACTTCAATCTCCG
CTCCATCGGCTACTCTTAGGTTTTGCTCCCCTCTTGCTACCTTCCGCACGGTACGGAATT
CCTTTCTTAGCTAGCCACGCTTTGAAACGTGGGCAATTTCTTTGCCAATGTCCATTAGTG
TCGCAAAAAGGACAATATGGACTCTTAGGAGGACCAGCTGAAGTTTGAGCAGTAGAGTTA
TTCCCTCCATACTTCTGAGATTGGTCCGGCTTATTCTTCTTACTGTTAGAGGATTCTCCT
TGATACATCTTTCTTTTGCCTCTGTTATTGGCATTAGCGAGGTTGAGTTGGTCTTTAAGC
TTTTGTTTCTCAGCTCTCTAACGCTCTTCCTCTTCCACTGAATGTGAAATTAGCTCCTGC
ACCAGAAGCCATCGATTCGGGTTTCTTCCTTTCTTTTCTTCTTCTTTGGGCTTTGCTTTT
CTTCTTCTCGCTAGATGGCGCCGGTGACTGAGATAGCGTCACGAACCCCTTCCAGTGCGA
TTGCCGATCGGAGGCTAATTAGGGTTTAGNATTTTCCNAGATA

clustalw multiple alignements is not computed in this case