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Oryza sativa
cluster # 5500 cluster # 5500       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5500#0 length = 1010 sequences # 2  
consensus_5500#1 length = 693 sequences # 1  

consensusID : consensus_5500#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1010
fasta sequence
                              [TGTCAGCCAGAGCTGCAGATCAAACTGGGGCACGGGCGCTCCCCACGCGCGCAGAACAGAGCACCACGAAGCTCCAAACACATTCCTCCATCATCTCATCTTTTGACCGGTCACCGGCCGGCCGGGGACCTACGCGGCGGCCACCACCACCACCACCGGCAGCGCCATGACAGCCTGAACTTGTGTTTAAGTAAGCCCCAAAGCGTAGCAAAGTATTGCAGGACCAACGAAAAGTCTATATAGGTTTCAAATGGAGTGCGGTGTTACACTTCCAATCCTCTATGGCCACGTAGCCTTGCGGCCAGGGTTACCGATTTCGAGGTAAAAACCGGTTCCTGTTGGCCGCAAGGCTACACAAAACCGGACCCTACTGGTTTCAAGAACAAAAAAAGGAATGGACTCCCGCACTATCTCTAGTTCTTTACACATGTCATGGAGGAATAACTCAGTGAAACAACGCACTGTCTGGTGCTGTTTGTTAAAAAAAAAAAGAAAGAAAAAACTTAGAGTGACTGACCAAGAAATCCATGATCTGGTCTACGTTCTTGGTTCGTCTACCGATTCATCAAGAAGAGATTCCACACCGGCCTAGCTACGGTGTCCCGTGATGTCGGCTGTCGGCAAGATCAACATGTATGTTTCGTTCAGCTCCTCCAGTGAAATGGCCCCGGACAGCTATATAGCCTGAATCCCAATCAGAGATGCAGTCATGGATGATAACCATGCGTCGTATGCTTCAGTAATTCAGTTTAGTAGGCTCATGTGCCTCTGAATCTCTGATTGGGAAGTTGCAGTAGGCAGACATTCCAGTTTGGATGCCATGATCAGTTAGTTATCAATGCCGATCCTGTGCTGATGCAGTTGTTGGGTTGGGTCTGATTAGTGTGACGAGCAGGAAGAGACATTTGCCAGTTTTTCTGGATCTGCTACATCATTCAGAGGCTTTGCTAATTGATGCTGTATTTCTGTCTCCAAAAAAAAAAAAAAGTAAGTGAAATCTTTGAGAAAAA]

[+] EMBL AK109317             [TGTCAGCCAGAGCTGCAGATCAAACTGGGGCACGGGCGCTCCCCACGCGCGCAGAACAGAGCACCACGAAGCTCCAAACACATTCCTCCATCATCTCATCTTTTGACCGGTCACCGGCCGGCCGGGGACCTACGCGGCGGCCACCACCACCACCACCGGCAGCGCCATGACAGCCTGAACTTGTGTTTAAGTAAGCCCCAAAGCGTAGCAAAGTATTGCAGGACCAACGAAAAGTCTATATAGGTTTCAAATGGAGTGCGGTGTTACACTTCCAATCCTCTATGGCCACGTAGCCTTGCGGCCAGGGTTACCGATTTCGAGGTAAAAACCGGTTCCTGTTGGCCGCAAGGCTACACAAAACCGGACCCTACTGGTTTCAAGAACAAAAAAAGGAATGGACTCCCGCACTATCTCTAGTTCTTTACACATGTCATGGAGGAATAACTCAGTGAAACAACGCACTGTCTGGTGCTGTTTGTTAAAAAAAAAAAGAAAGAAAAAACTTAGAGTGACTGACCAAGAAATCCATGATCTGGTCTACGTTCTTGGTTCGTCTACCGATTCATCAAGAAGAGATTCCACACCGGCCTAGCTACGGTGTCCCGTGATGTCGGCTGTCGGCAAGATCAACATGTATGTTTCGTTCAGCTCCTCCAGTGAAATGGCCCCGGACAGCTATATAGCCTGAATCCCAATCAGAGATGCAGTCATGGATGATAACCATGCGTCGTATGCTTCAGTAATTCAGTTTAGTAGGCTCATGTGCCTCTGAATCTCTGATTGGGAAGTTGCAGTAGGCAGACATTCCAGTTTGGATGCCATGATCAGTTAGTTATCAATGCCGATCCTGTGCTGATGCAGTTGTTGGGTTGGGTCTGATTAGTGTGACGAGCAGGAAGAGACATTTGCCAGTTTTTCTGGATCTGCTACATCATTCAGAGGCTTTGCTAATTGATGCTGTATTTCTGTCTCCAAAAAAAAAAAAAAGTAAGTGA               ]
[+] EMBL AU066076             [                                                                                                                                                                                                                                                                                                                                                                            ACCCTACTGGTTNCAAGACCAAAAAAAGGAATGGACTCCNGCACTATCTCTAGTTCTTTACACATGTCATGGAGGAATAACTCAGTGAAACAACGCACTGTCTGGTGCTGTTTGTTAAAAAAAAAAAGAAAGAAAAAACTTAGAGTGACTGACCAAGAAATCCATGATCTGGTCTACGTTCTTGGTTCGTCTACCGATTCATCAAGAAGAGATTCCACACCGGCCTAGCTACGGTGTCCCGTGATGTCGGCTGTCGGCAAGATCAACATGTATGTTTCGTTCAGCTCCTCCAGTGAAATGGCCCCGGACAGCTATATAGCCTGAATCCCAATCAGAGATGCAGTCATGGATGATAACCATGCGTCGTATGCTTCAGTAATTCAGTTTAGTAGGCTCATGTGCCTCTGAATCTCTGATTGGGAAGTTGCAGTAGGCAGACATTCCAGTTTGGATGCCATGATCAGTTAGTTATCAATGCCGATCCTGTGCTGATGCAGTTGTTGGGTTGGGTCTGATTAGTGTGACGAGCAGGAAGAGACATTTGCCAGTTTTTCTGGATCTGCTACATCATTCAGAGGCTTTGCTAATTGATGCTGTATTTCTGTCTCCAAAAAAAAAAAAAAGTAAGTGAAATCTTTGAGAAAAA]


>consensus_5500#0 TGTCAGCCAGAGCTGCAGATCAAACTGGGGCACGGGCGCTCCCCACGCGCGCAGAACAGA GCACCACGAAGCTCCAAACACATTCCTCCATCATCTCATCTTTTGACCGGTCACCGGCCG GCCGGGGACCTACGCGGCGGCCACCACCACCACCACCGGCAGCGCCATGACAGCCTGAAC TTGTGTTTAAGTAAGCCCCAAAGCGTAGCAAAGTATTGCAGGACCAACGAAAAGTCTATA TAGGTTTCAAATGGAGTGCGGTGTTACACTTCCAATCCTCTATGGCCACGTAGCCTTGCG GCCAGGGTTACCGATTTCGAGGTAAAAACCGGTTCCTGTTGGCCGCAAGGCTACACAAAA CCGGACCCTACTGGTTTCAAGAACAAAAAAAGGAATGGACTCCCGCACTATCTCTAGTTC TTTACACATGTCATGGAGGAATAACTCAGTGAAACAACGCACTGTCTGGTGCTGTTTGTT AAAAAAAAAAAGAAAGAAAAAACTTAGAGTGACTGACCAAGAAATCCATGATCTGGTCTA CGTTCTTGGTTCGTCTACCGATTCATCAAGAAGAGATTCCACACCGGCCTAGCTACGGTG TCCCGTGATGTCGGCTGTCGGCAAGATCAACATGTATGTTTCGTTCAGCTCCTCCAGTGA AATGGCCCCGGACAGCTATATAGCCTGAATCCCAATCAGAGATGCAGTCATGGATGATAA CCATGCGTCGTATGCTTCAGTAATTCAGTTTAGTAGGCTCATGTGCCTCTGAATCTCTGA TTGGGAAGTTGCAGTAGGCAGACATTCCAGTTTGGATGCCATGATCAGTTAGTTATCAAT GCCGATCCTGTGCTGATGCAGTTGTTGGGTTGGGTCTGATTAGTGTGACGAGCAGGAAGA GACATTTGCCAGTTTTTCTGGATCTGCTACATCATTCAGAGGCTTTGCTAATTGATGCTG TATTTCTGTCTCCAAAAAAAAAAAAAAGTAAGTGAAATCTTTGAGAAAAA



consensusID : consensus_5500#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence
                              [CGAGCGGCCACCACCACCACCACCGGCAGCGCCATGACAGCCTGAACTTGTGTTTAAGTAAGCCCCAAAGCGTAGCAAAGTATTGCAGGACCAACGAAAAGGTGAGGCTGTGCTTTGATTTGATCTTCTTTTTTGTGTGCATGACCACCTACTATACCTCTCTTTGATTCTGCAACTCTGAATCTGAAACGCATTGTGTTCTGACATTGCAGGTTTCTTTTTTTTTTTTTCTCTTTGGCCTCTGGGGCTCTTTCATGATTCCAAAAGTGCAATGTTGCATCACTGGAGTGAACTGATTGTTTGCTTTGCTGAATTGTATTATTGGAAGAGTTAAAATCTTCCTTAGTTACTACCAACATCCCACCAAAGAAAGAGCTATCTAGTCTGTTCTACACGTTAAGTACCCACTATTACGTCACTTCGAAACCACATGGGACTAAACTACACTATTACTGCAGTCTATATAGGTTTCAAATGGAGTGCGGTGTTACACTTCCAATCCTCTATGGCCACGTAGCCTTGCGGCCAGGGTTACCGATTTCGAGGTAAAAACCGGTTNCTGTTGGCCGCAAGGCTTCACAAAACCGGACCCCTACTGGTTTCAAGAACCAAAAAANGGAATGGACTCCGNACTATCTCTAGTTCTTTACCACATGTCATGGGAGGAATAACTTAATGGAACAACCGCACTGN]

[+] EMBL AU090581             [CGAGCGGCCACCACCACCACCACCGGCAGCGCCATGACAGCCTGAACTTGTGTTTAAGTAAGCCCCAAAGCGTAGCAAAGTATTGCAGGACCAACGAAAAGGTGAGGCTGTGCTTTGATTTGATCTTCTTTTTTGTGTGCATGACCACCTACTATACCTCTCTTTGATTCTGCAACTCTGAATCTGAAACGCATTGTGTTCTGACATTGCAGGTTTCTTTTTTTTTTTTTCTCTTTGGCCTCTGGGGCTCTTTCATGATTCCAAAAGTGCAATGTTGCATCACTGGAGTGAACTGATTGTTTGCTTTGCTGAATTGTATTATTGGAAGAGTTAAAATCTTCCTTAGTTACTACCAACATCCCACCAAAGAAAGAGCTATCTAGTCTGTTCTACACGTTAAGTACCCACTATTACGTCACTTCGAAACCACATGGGACTAAACTACACTATTACTGCAGTCTATATAGGTTTCAAATGGAGTGCGGTGTTACACTTCCAATCCTCTATGGCCACGTAGCCTTGCGGCCAGGGTTACCGATTTCGAGGTAAAAACCGGTTNCTGTTGGCCGCAAGGCTTCACAAAACCGGACCCCTACTGGTTTCAAGAACCAAAAAANGGAATGGACTCCGNACTATCTCTAGTTCTTTACCACATGTCATGGGAGGAATAACTTAATGGAACAACCGCACTGN]


>consensus_5500#1 CGAGCGGCCACCACCACCACCACCGGCAGCGCCATGACAGCCTGAACTTGTGTTTAAGTA AGCCCCAAAGCGTAGCAAAGTATTGCAGGACCAACGAAAAGGTGAGGCTGTGCTTTGATT TGATCTTCTTTTTTGTGTGCATGACCACCTACTATACCTCTCTTTGATTCTGCAACTCTG AATCTGAAACGCATTGTGTTCTGACATTGCAGGTTTCTTTTTTTTTTTTTCTCTTTGGCC TCTGGGGCTCTTTCATGATTCCAAAAGTGCAATGTTGCATCACTGGAGTGAACTGATTGT TTGCTTTGCTGAATTGTATTATTGGAAGAGTTAAAATCTTCCTTAGTTACTACCAACATC CCACCAAAGAAAGAGCTATCTAGTCTGTTCTACACGTTAAGTACCCACTATTACGTCACT TCGAAACCACATGGGACTAAACTACACTATTACTGCAGTCTATATAGGTTTCAAATGGAG TGCGGTGTTACACTTCCAATCCTCTATGGCCACGTAGCCTTGCGGCCAGGGTTACCGATT TCGAGGTAAAAACCGGTTNCTGTTGGCCGCAAGGCTTCACAAAACCGGACCCCTACTGGT TTCAAGAACCAAAAAANGGAATGGACTCCGNACTATCTCTAGTTCTTTACCACATGTCAT GGGAGGAATAACTTAATGGAACAACCGCACTGN



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5500#0      TGTCAGCCAGAGCTGCAGATCAAACTGGGGCACGGGCGCTCCCCACGCGCGCAGAACAGA 60
consensus_5500#1      ------------------------------------------------------------
                                                                                  

consensus_5500#0      GCACCACGAAGCTCCAAACACATTCCTCCATCATCTCATCTTTTGACCGGTCACCGGCCG 120
consensus_5500#1      ------------------------------------------------------------
                                                                                  

consensus_5500#0      GCCGGGGACCTACGCGGCGGCCACCACCACCACCACCGGCAGCGCCATGACAGCCTGAAC 180
consensus_5500#1      ------------CG-AGCGGCCACCACCACCACCACCGGCAGCGCCATGACAGCCTGAAC 47
                                  **  ********************************************

consensus_5500#0      TTGTGTTTAAGTAAGCCCCAAAGCGTAGCAAAGTATTGCAGGACCAACGAAAAGTCTATA 240
consensus_5500#1      TTGTGTTTAAGTAAGCCCCAAAGCGTAGCAAAGTATTGCAGGACCAACGAAAAGGTGAGG 107
                      ******************************************************   *  

consensus_5500#0      TAG-GTTTCAAATGGAG-TGCGGTGTTACACTTCCAATCCTCTATGGCCACGTAGCCTTG 298
consensus_5500#1      CTGTGCTTTGATTTGATCTTCTTTTTTGTGTGCATGACCACCTACTAT-ACCTCTCTTTG 166
                        * * **  * * **  * *  * **         * *  ***     ** *  * ***

consensus_5500#0      CGGCCAGGGTTACCGATTTCGAGGTAAAAACCGGTTCCTGTTGGCCGCAAGGCTACACAA 358
consensus_5500#1      ATTCTGCAACT-CTGAATCTGAAACGCA--TTGTGTTCTGACA-TTGCAGGTTTCTTTTT 222
                         *      * * ** *  **     *    *  * ***      *** *  *      

consensus_5500#0      AACCGGACCCTACTGGTTTCAAGAACAAAAAAAGGAATGGACTCCCGCACTATCTCTAGT 418
consensus_5500#1      TTTTTTTTCTCTTTGGCCTCTGG----------------GGCTCTTTCATGATTCCAAAA 266
                              *    ***  **  *                * ***   **  **  * *  

consensus_5500#0      TCTTTACACATGTCATGGAGGAATAACTCAGTGAAACAACGCACTGTCTGGTGCTGTTTG 478
consensus_5500#1      GTGCAATGT-TGCATCACTGGAGTGAACTGATTGTTTGCTTTGCTGAATTGTATTATTGG 325
                           *    **       *** * *     *           ***  * **  * ** *

consensus_5500#0      TTAAAAAAAAAAAGAAAGAAAAAACTTAGAGTGACTGACCAAGAAATCCATGATCTGGTC 538
consensus_5500#1      AAGAGTTAAAATCTTCCTTAGTTACTACCAACATCCCACCAAAGAAAGAGCTATCTAGTC 385
                         *   ****        *   ***   *    *  *****  **      **** ***

consensus_5500#0      TACGTTCTTGGTT---CGTCTACCGATTCATCAAGAAGAGATTCCACACCGGCCTAG-CT 594
consensus_5500#1      TGTTCTACACGTTAAGTACCCACTATTACGTCACTTCGAAA--CCACATGGGACTAAACT 443
                      *    *    ***      * **   * * ***    ** *  *****  ** ***  **

consensus_5500#0      ACGGTGTCCCGTGATGTCGGCTGTCGGCAAGATCAACATGTATGTTTCGTTCAGCTCCTC 654
consensus_5500#1      ACACTAT----TACTGCAGTCTAT--ATAGGTTTCAAATGGA-GTGCGGTGTTACACTTC 496
                      **  * *    *  **  * ** *    * * *  * *** * **   **    * * **

consensus_5500#0      CAGTGAAATGGCCCCGGACAGCTATATAGCCTGAATCCCAATCAGAGATGCAGTCATGGA 714
consensus_5500#1      CAAT--------CCTCTATGGCCACGTAGCCT----TGCGGCCAGGGTTACCGATTTCGA 544
                      ** *        **   *  ** *  ******      *   *** * * * *   * **

consensus_5500#0      --TGATAACCATGCGTCGTATGCTTCAGTAATTCAGTTTAGTAGGCTCATGTGCCTCTGA 772
consensus_5500#1      GGTAAAAACCGGTTNCTGTTGGCCGCAAGGCTTCACAAAACCGGACCCCTA-----CTGG 599
                        * * ****       **  **  **    ****    *   * * * *      *** 

consensus_5500#0      ATCTCTGATTGGGAAGTTGCAGTAGGCAGACATTCCAGTTTGGATGCCATGATCAGTTAG 832
consensus_5500#1      TTTCAAGAACCAAAAAANGGAATGG------ACTCCGNACTATCTCTAGTTCTTTACCAC 653
                       *    **     **   * * * *      * ***    *   *    *  *     * 

consensus_5500#0      TTATCAATGCCGATCCTGTGCTGATGCAGTTGTTGGGTTGGGTCTGATTAGTGTGACGAG 892
consensus_5500#1      ATGTCA-TGGGAGGAATAACTTAATGGAACAACCGCACTGN------------------- 693
                       * *** **       *    * *** *      *   **                    

consensus_5500#0      CAGGAAGAGACATTTGCCAGTTTTTCTGGATCTGCTACATCATTCAGAGGCTTTGCTAAT 952
consensus_5500#1      ------------------------------------------------------------
                                                                                  

consensus_5500#0      TGATGCTGTATTTCTGTCTCCAAAAAAAAAAAAAAGTAAGTGAAATCTTTGAGAAAAA 1010
consensus_5500#1      ----------------------------------------------------------
                                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)