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Oryza sativa
cluster # 5501 cluster # 5501       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5501#0 length = 1498 sequences # 2  
consensus_5501#1 length = 320 sequences # 1  

consensusID : consensus_5501#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1498
fasta sequence
                              [AGCCGAGTTCCCCATCGCCATCGGTGGCGGCATCTCCGTGACCCCCTGCTCAAGTGGCGGCGGCGGAGCGTGCGGGGAAGGAGGAGGTGGAGGATGGACTGGTCGAACCTTGGCGGGGAGGGGCCGGCCGGCCTCATCGCCGAGCGCGTCCTCGCCAACGACGTCGCCGACTACATCCGCTTCCGCGCCGTGTGCCGGCTGTGGCGGCTGCGCTCGGTGGATCCCCTCTCCCGCGCCCTGGACTGCCGCTTCCTCCCCCGGCGGTGGATCATGCTCGACAAGGCGGCGCCCCCCCGCTGCCGCCGCTTCCTCTACCTCTCCACCGGCGAGTGCATCCGTACGGATCTCCCGGAGCTCGAGAGCCACACCCTGGTCGCGCTCGCCCCGGAGGGCCTCCTGCTGCTGCTCCACCAGCGCACCCTCCTCCTCCGCCTGCTCAACCCCCTCACCCGCCACCTCACCGACCTCCCGCCGGTCACCGCGCTGCTCACGCCGGAGCAACTGCGATCTTGGCATTCGGATGGGGGGTTAGAAGACGATCCGCTATTGGCGCGTGGCGTCGGTCTTGCATCCGCAACCACAGTGGCTCTCTTCCTCTGCCGCCCCAAGTTGATCGCCGTCGCTAAACCCGGCGATGAGTGCTGGGCCGTCGTCGTCGCCGACAAGAACCGCCCCTACATTGACTCGGCTTTGCCCTTCGCAGGGCGCTTCTACTGCGCCATCGGCGGCAGTGTCATGGTGCTGGACAGCTCTCCTTCTTCAGATCAGATCATAGAGGGCGGCCGCGGCTGGTCACCACCGCTCAGCCGAGCAAGCCCTTGCATTTCTCCCGGATGTCAGGAACTATTCACCTTGTGGACAATGGTGGGGAGTTTGATGCTGGTGTACCGTAAGATCCGCCAGAGCAATGTTGATGATGAATCGCGGCAAGGTGCTGCGAAATACGAGATGAAGTATGATGTTTACAGGGTGGATTTCGACGCCGGGGACTTGATCCCGGTCAAGGGGTTGGGCGGGCGAGCTGTGTTCTTGGGCCTGTGCCGCTCCGTCACTCTACTACCTGCAGAGGCTCGCAGCTGACACTCTCTACCTGGGATTCGATTGTCGTGAAAAGACTCAGATGAACGAAA-TCGACGGTTACAATGTTGCAGATGGGAGTAGCGAGCCATGCCACCTCGACTCCATCTT-CCGTGAGATGTCGCAGCAGGACGGTTACAGTGTTGCAGATGGAAGCAGCGAGCCATGCCACCTCGACTGCATCTTTCTTCAGATGTTGCAGCAGCCATACAGCTTCGTCAACTGCCTCTCCCACTGCATCCAGGGAATAGGCGATCATCTTGCCTAAGCTCGCGGATCATCCGGTGGTCGTTCGGTGGCGATCTGAACCTTGCATCCTTTGCTTTGGCATCACTTGTATCGTTGTTCCTTGCGATGAAACAGCATCTGTACCCCCCAAGTAATTAATTTATGAAGA-TGTGCTTACGCGCTTATTTTTAAA]

[+] EMBL AK072209             [AGCCGAGTTCCCCATCGCCATCGGTGGCGGCATCTCCGTGACCCCCTGCTCAAGTGGCGGCGGCGGAGCGTGCGGGGAAGGAGGAGGTGGAGGATGGACTGGTCGAACCTTGGCGGGGAGGGGCCGGCCGGCCTCATCGCCGAGCGCGTCCTCGCCAACGACGTCGCCGACTACATCCGCTTCCGCGCCGTGTGCCGGCTGTGGCGGCTGCGCTCGGTGGATCCCCTCTCCCGCGCCCTGGACTGCCGCTTCCTCCCCCGGCGGTGGATCATGCTCGACAAGGCGGCGCCCCCCCGCTGCCGCCGCTTCCTCTACCTCTCCACCGGCGAGTGCATCCGTACGGATCTCCCGGAGCTCGAGAGCCACACCCTGGTCGCGCTCGCCCCGGAGGGCCTCCTGCTGCTGCTCCACCAGCGCACCCTCCTCCTCCGCCTGCTCAACCCCCTCACCCGCCACCTCACCGACCTCCCGCCGGTCACCGCGCTGCTCACGCCGGAGCAACTGCGATCTTGGCATTCGGATGGGGGGTTAGAAGACGATCCGCTATTGGCGCGTGGCGTCGGTCTTGCATCCGCAACCACAGTGGCTCTCTTCCTCTGCCGCCCCAAGTTGATCGCCGTCGCTAAACCCGGCGATGAGTGCTGGGCCGTCGTCGTCGCCGACAAGAACCGCCCCTACATTGACTCGGCTTTGCCCTTCGCAGGGCGCTTCTACTGCGCCATCGGCGGCAGTGTCATGGTGCTGGACAGCTCTCCTTCTTCAGATCAGATCATAGAGGGCGGCCGCGGCTGGTCACCACCGCTCAGCCGAGCAAGCCCTTGCATTTCTCCCGGATGTCAGGAACTATTCACCTTGTGGACAATGGTGGGGAGTTTGATGCTGGTGTACCGTAAGATCCGCCAGAGCAATGTTGATGATGAATCGCGGCAAGGTGCTGCGAAATACGAGATGAAGTATGATGTTTACAGGGTGGATTTCGACGCCGGGGACTTGATCCCGGTCAAGGGGTTGGGCGGGCGAGCTGTGTTCTTGGGCCTGTGCCGCTCCGTCACTCTACTACCTGCAGAGGCTCGCAGCTGACACTCTCTACCTGGGATTCGATTGTCGTGAAAAGACTCAGATGAACGAAA TCGACGGTTACAATGTTGCAGATGGGAGTAGCGAGCCATGCCACCTCGACTCCATCTT CCGTGAGATGTCGCAGCAGGACGGTTACAGTGTTGCAGATGGAAGCAGCGAGCCATGCCACCTCGACTGCATCTTTCTTCAGATGTTGCAGCAGCCATACAGCTTCGTCAACTGCCTCTCCCACTGCATCCAGGGAATAGGCGATCATCTTGCCTAAGCTCGCGGATCATCCGGTGGTCGTTCGGTGGCGATCTGAACCTTGCATCCTTTGCTTTGGCATCACTTGTATCGTTGTTCCTTGCGATGAAACAGCATCTGTACCCCCCAAGTAATTAATTTATGAAGA TGTGCTTAC               ]
[+] EMBL AU058144             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GGCTCGCAGTTGAAACTCTCCACCTGGNATCCGATTGCCGTNAAAAGACTCAGATGAACGAAANCCGACGGTTACAATGTTGCAGATGGGAGTAGCGAGCCATGCCACCTCGACTCCATCTTCCCGTGAGATGTCGCAGCAGGACGGTTACAGTGTTGCAGATGGAAGCAGCGAGCCATGCCACCTCGACTGCATCTTTCTTCAGATGTTGCAGCAGCCATACAGCTTCGTCAACTGCCTCTCCCACTGCATCCAGGGAATAGGCGATCATCTTGCCTAAGCTCGCGGATCATCCGGTGGTCGTTCGGTGGCAATCTGAACCTTGCATCCTTTGCTTTGGCATCACTTGTATCGTTGTTCCTTGCGATGAAACAGCATCTGTACCCCCCAAGTAATTAATTTATGAAGATTGT NTTACGCGCTTATTTTTAAA]


>consensus_5501#0 AGCCGAGTTCCCCATCGCCATCGGTGGCGGCATCTCCGTGACCCCCTGCTCAAGTGGCGG CGGCGGAGCGTGCGGGGAAGGAGGAGGTGGAGGATGGACTGGTCGAACCTTGGCGGGGAG GGGCCGGCCGGCCTCATCGCCGAGCGCGTCCTCGCCAACGACGTCGCCGACTACATCCGC TTCCGCGCCGTGTGCCGGCTGTGGCGGCTGCGCTCGGTGGATCCCCTCTCCCGCGCCCTG GACTGCCGCTTCCTCCCCCGGCGGTGGATCATGCTCGACAAGGCGGCGCCCCCCCGCTGC CGCCGCTTCCTCTACCTCTCCACCGGCGAGTGCATCCGTACGGATCTCCCGGAGCTCGAG AGCCACACCCTGGTCGCGCTCGCCCCGGAGGGCCTCCTGCTGCTGCTCCACCAGCGCACC CTCCTCCTCCGCCTGCTCAACCCCCTCACCCGCCACCTCACCGACCTCCCGCCGGTCACC GCGCTGCTCACGCCGGAGCAACTGCGATCTTGGCATTCGGATGGGGGGTTAGAAGACGAT CCGCTATTGGCGCGTGGCGTCGGTCTTGCATCCGCAACCACAGTGGCTCTCTTCCTCTGC CGCCCCAAGTTGATCGCCGTCGCTAAACCCGGCGATGAGTGCTGGGCCGTCGTCGTCGCC GACAAGAACCGCCCCTACATTGACTCGGCTTTGCCCTTCGCAGGGCGCTTCTACTGCGCC ATCGGCGGCAGTGTCATGGTGCTGGACAGCTCTCCTTCTTCAGATCAGATCATAGAGGGC GGCCGCGGCTGGTCACCACCGCTCAGCCGAGCAAGCCCTTGCATTTCTCCCGGATGTCAG GAACTATTCACCTTGTGGACAATGGTGGGGAGTTTGATGCTGGTGTACCGTAAGATCCGC CAGAGCAATGTTGATGATGAATCGCGGCAAGGTGCTGCGAAATACGAGATGAAGTATGAT GTTTACAGGGTGGATTTCGACGCCGGGGACTTGATCCCGGTCAAGGGGTTGGGCGGGCGA GCTGTGTTCTTGGGCCTGTGCCGCTCCGTCACTCTACTACCTGCAGAGGCTCGCAGCTGA CACTCTCTACCTGGGATTCGATTGTCGTGAAAAGACTCAGATGAACGAAATCGACGGTTA CAATGTTGCAGATGGGAGTAGCGAGCCATGCCACCTCGACTCCATCTTCCGTGAGATGTC GCAGCAGGACGGTTACAGTGTTGCAGATGGAAGCAGCGAGCCATGCCACCTCGACTGCAT CTTTCTTCAGATGTTGCAGCAGCCATACAGCTTCGTCAACTGCCTCTCCCACTGCATCCA GGGAATAGGCGATCATCTTGCCTAAGCTCGCGGATCATCCGGTGGTCGTTCGGTGGCGAT CTGAACCTTGCATCCTTTGCTTTGGCATCACTTGTATCGTTGTTCCTTGCGATGAAACAG CATCTGTACCCCCCAAGTAATTAATTTATGAAGATGTGCTTACGCGCTTATTTTTAAA



consensusID : consensus_5501#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 320
fasta sequence
                              [NAATGGGAAGTAGGCGAGCNANTGCCAACCNCCGACNANCNTCCAACCGTGANATGNCNCAGCAGGCCGGTTATAGTGCTGCNGTTGGAAGCAGCGAGCCATGCCACCTCGACTGCATCTTTCTTCAGATGTTGNAGNAGCCATACCAGCTTCGTCAACTGCCTCTCCCACTGCATCCAGGGAATAGGCGATCATCTTGCCTAAGCTCGCGGATCATCCGGTGGNCGTACGGTGGCAATCTGAACCTTGCATNCTTTGCTTTGGCATCACTTGTAGCGTTGTTCCTTGCGATGAAACAGCATCTGTACCCCCNAAGTAAT]

[+] EMBL D42730               [NAATGGGAAGTAGGCGAGCNANTGCCAACCNCCGACNANCNTCCAACCGTGANATGNCNCAGCAGGCCGGTTATAGTGCTGCNGTTGGAAGCAGCGAGCCATGCCACCTCGACTGCATCTTTCTTCAGATGTTGNAGNAGCCATACCAGCTTCGTCAACTGCCTCTCCCACTGCATCCAGGGAATAGGCGATCATCTTGCCTAAGCTCGCGGATCATCCGGTGGNCGTACGGTGGCAATCTGAACCTTGCATNCTTTGCTTTGGCATCACTTGTAGCGTTGTTCCTTGCGATGAAACAGCATCTGTACCCCCNAAGTAAT]


>consensus_5501#1 NAATGGGAAGTAGGCGAGCNANTGCCAACCNCCGACNANCNTCCAACCGTGANATGNCNC AGCAGGCCGGTTATAGTGCTGCNGTTGGAAGCAGCGAGCCATGCCACCTCGACTGCATCT TTCTTCAGATGTTGNAGNAGCCATACCAGCTTCGTCAACTGCCTCTCCCACTGCATCCAG GGAATAGGCGATCATCTTGCCTAAGCTCGCGGATCATCCGGTGGNCGTACGGTGGCAATC TGAACCTTGCATNCTTTGCTTTGGCATCACTTGTAGCGTTGTTCCTTGCGATGAAACAGC ATCTGTACCCCCNAAGTAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5501#0      AGCCGAGTTCCCCATCGCCATCGGTGGCGGCATCTCCGTGACCCCCTGCTCAAGTGGCGG 60
consensus_5501#1      ------------------------------------------------------------
                                                                                  

consensus_5501#0      CGGCGGAGCGTGCGGGGAAGGAGGAGGTGGAGGATGGACTGGTCGAACCTTGGCGGGGAG 120
consensus_5501#1      ------------------------------------------------------------
                                                                                  

consensus_5501#0      GGGCCGGCCGGCCTCATCGCCGAGCGCGTCCTCGCCAACGACGTCGCCGACTACATCCGC 180
consensus_5501#1      ------------------------------------------------------------
                                                                                  

consensus_5501#0      TTCCGCGCCGTGTGCCGGCTGTGGCGGCTGCGCTCGGTGGATCCCCTCTCCCGCGCCCTG 240
consensus_5501#1      ------------------------------------------------------------
                                                                                  

consensus_5501#0      GACTGCCGCTTCCTCCCCCGGCGGTGGATCATGCTCGACAAGGCGGCGCCCCCCCGCTGC 300
consensus_5501#1      ------------------------------------------------------------
                                                                                  

consensus_5501#0      CGCCGCTTCCTCTACCTCTCCACCGGCGAGTGCATCCGTACGGATCTCCCGGAGCTCGAG 360
consensus_5501#1      ------------------------------------------------------------
                                                                                  

consensus_5501#0      AGCCACACCCTGGTCGCGCTCGCCCCGGAGGGCCTCCTGCTGCTGCTCCACCAGCGCACC 420
consensus_5501#1      ------------------------------------------------------------
                                                                                  

consensus_5501#0      CTCCTCCTCCGCCTGCTCAACCCCCTCACCCGCCACCTCACCGACCTCCCGCCGGTCACC 480
consensus_5501#1      ------------------------------------------------------------
                                                                                  

consensus_5501#0      GCGCTGCTCACGCCGGAGCAACTGCGATCTTGGCATTCGGATGGGGGGTTAGAAGACGAT 540
consensus_5501#1      ------------------------------------------------------------
                                                                                  

consensus_5501#0      CCGCTATTGGCGCGTGGCGTCGGTCTTGCATCCGCAACCACAGTGGCTCTCTTCCTCTGC 600
consensus_5501#1      ------------------------------------------------------------
                                                                                  

consensus_5501#0      CGCCCCAAGTTGATCGCCGTCGCTAAACCCGGCGATGAGTGCTGGGCCGTCGTCGTCGCC 660
consensus_5501#1      ------------------------------------------------------------
                                                                                  

consensus_5501#0      GACAAGAACCGCCCCTACATTGACTCGGCTTTGCCCTTCGCAGGGCGCTTCTACTGCGCC 720
consensus_5501#1      ------------------------------------------------------------
                                                                                  

consensus_5501#0      ATCGGCGGCAGTGTCATGGTGCTGGACAGCTCTCCTTCTTCAGATCAGATCATAGAGGGC 780
consensus_5501#1      ------------------------------------------------------------
                                                                                  

consensus_5501#0      GGCCGCGGCTGGTCACCACCGCTCAGCCGAGCAAGCCCTTGCATTTCTCCCGGATGTCAG 840
consensus_5501#1      ------------------------------------------------------------
                                                                                  

consensus_5501#0      GAACTATTCACCTTGTGGACAATGGTGGGGAGTTTGATGCTGGTGTACCGTAAGATCCGC 900
consensus_5501#1      ------------------------------------------------------------
                                                                                  

consensus_5501#0      CAGAGCAATGTTGATGATGAATCGCGGCAAGGTGCTGCGAAATACGAGATGAAGTATGAT 960
consensus_5501#1      ------------------------------------------------------------
                                                                                  

consensus_5501#0      GTTTACAGGGTGGATTTCGACGCCGGGGACTTGATCCCGGTCAAGGGGTTGGGCGGGCGA 1020
consensus_5501#1      ------------------------------------------------------------
                                                                                  

consensus_5501#0      GCTGTGTTCTTGGGCCTGTGCCGCTCCGTCACTCTACTACCTGCAGAGGCTCGCAGCTGA 1080
consensus_5501#1      ------------------------------------------------------------
                                                                                  

consensus_5501#0      CACTCTCTACCTGGGATTCGATTGTCGTGAAAAGACTCAGATGAACGAAATCGACGGTTA 1140
consensus_5501#1      ------------------------------------------------------------
                                                                                  

consensus_5501#0      CAATGTTGCAGATGGGAGTAGCGAGCCATGCCACCTCGACTCCATCTTCCGTGAGATGTC 1200
consensus_5501#1      NAATG--GGAAGTAGGCGAGCNANTGCCAACCNCCGACNANCNTCCAACCGTGANATGNC 58
                       ****  * *  * ** *        *   ** **      *   *  ****** *** *

consensus_5501#0      GCAGCAGGACGGTTACAGTGTTGCAGATGGAAGCAGCGAGCCATGCCACCTCGACTGCAT 1260
consensus_5501#1      NCAGCAGGCCGGTTATAGTGCTGCNGTTGGAAGCAGCGAGCCATGCCACCTCGACTGCAT 118
                       ******* ****** **** *** * *********************************

consensus_5501#0      CTTTCTTCAGATGTTGCAGCAGCCATAC-AGCTTCGTCAACTGCCTCTCCCACTGCATCC 1319
consensus_5501#1      CTTTCTTCAGATGTTGNAGNAGCCATACCAGCTTCGTCAACTGCCTCTCCCACTGCATCC 178
                      **************** ** ******** *******************************

consensus_5501#0      AGGGAATAGGCGATCATCTTGCCTAAGCTCGCGGATCATCCGGTGGTCGTTCGGTGGCGA 1379
consensus_5501#1      AGGGAATAGGCGATCATCTTGCCTAAGCTCGCGGATCATCCGGTGGNCGTACGGTGGCAA 238
                      ********************************************** *** ******* *

consensus_5501#0      TCTGAACCTTGCATCCTTTGCTTTGGCATCACTTGTATCGTTGTTCCTTGCGATGAAACA 1439
consensus_5501#1      TCTGAACCTTGCATNCTTTGCTTTGGCATCACTTGTAGCGTTGTTCCTTGCGATGAAACA 298
                      ************** ********************** **********************

consensus_5501#0      GCATCTGTACCCCCCAAGTAATTAATTTATGAAGATGTGCTTACGCGCTTATTTTTAAA 1498
consensus_5501#1      GCATCTGTACCCCCNAAGTAAT------------------------------------- 320
                      ************** *******                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)