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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5501#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1498 fasta sequence
[AGCCGAGTTCCCCATCGCCATCGGTGGCGGCATCTCCGTGACCCCCTGCTCAAGTGGCGGCGGCGGAGCGTGCGGGGAAGGAGGAGGTGGAGGATGGACTGGTCGAACCTTGGCGGGGAGGGGCCGGCCGGCCTCATCGCCGAGCGCGTCCTCGCCAACGACGTCGCCGACTACATCCGCTTCCGCGCCGTGTGCCGGCTGTGGCGGCTGCGCTCGGTGGATCCCCTCTCCCGCGCCCTGGACTGCCGCTTCCTCCCCCGGCGGTGGATCATGCTCGACAAGGCGGCGCCCCCCCGCTGCCGCCGCTTCCTCTACCTCTCCACCGGCGAGTGCATCCGTACGGATCTCCCGGAGCTCGAGAGCCACACCCTGGTCGCGCTCGCCCCGGAGGGCCTCCTGCTGCTGCTCCACCAGCGCACCCTCCTCCTCCGCCTGCTCAACCCCCTCACCCGCCACCTCACCGACCTCCCGCCGGTCACCGCGCTGCTCACGCCGGAGCAACTGCGATCTTGGCATTCGGATGGGGGGTTAGAAGACGATCCGCTATTGGCGCGTGGCGTCGGTCTTGCATCCGCAACCACAGTGGCTCTCTTCCTCTGCCGCCCCAAGTTGATCGCCGTCGCTAAACCCGGCGATGAGTGCTGGGCCGTCGTCGTCGCCGACAAGAACCGCCCCTACATTGACTCGGCTTTGCCCTTCGCAGGGCGCTTCTACTGCGCCATCGGCGGCAGTGTCATGGTGCTGGACAGCTCTCCTTCTTCAGATCAGATCATAGAGGGCGGCCGCGGCTGGTCACCACCGCTCAGCCGAGCAAGCCCTTGCATTTCTCCCGGATGTCAGGAACTATTCACCTTGTGGACAATGGTGGGGAGTTTGATGCTGGTGTACCGTAAGATCCGCCAGAGCAATGTTGATGATGAATCGCGGCAAGGTGCTGCGAAATACGAGATGAAGTATGATGTTTACAGGGTGGATTTCGACGCCGGGGACTTGATCCCGGTCAAGGGGTTGGGCGGGCGAGCTGTGTTCTTGGGCCTGTGCCGCTCCGTCACTCTACTACCTGCAGAGGCTCGCAGCTGACACTCTCTACCTGGGATTCGATTGTCGTGAAAAGACTCAGATGAACGAAA-TCGACGGTTACAATGTTGCAGATGGGAGTAGCGAGCCATGCCACCTCGACTCCATCTT-CCGTGAGATGTCGCAGCAGGACGGTTACAGTGTTGCAGATGGAAGCAGCGAGCCATGCCACCTCGACTGCATCTTTCTTCAGATGTTGCAGCAGCCATACAGCTTCGTCAACTGCCTCTCCCACTGCATCCAGGGAATAGGCGATCATCTTGCCTAAGCTCGCGGATCATCCGGTGGTCGTTCGGTGGCGATCTGAACCTTGCATCCTTTGCTTTGGCATCACTTGTATCGTTGTTCCTTGCGATGAAACAGCATCTGTACCCCCCAAGTAATTAATTTATGAAGA-TGTGCTTACGCGCTTATTTTTAAA]
[+] EMBL AK072209 [AGCCGAGTTCCCCATCGCCATCGGTGGCGGCATCTCCGTGACCCCCTGCTCAAGTGGCGGCGGCGGAGCGTGCGGGGAAGGAGGAGGTGGAGGATGGACTGGTCGAACCTTGGCGGGGAGGGGCCGGCCGGCCTCATCGCCGAGCGCGTCCTCGCCAACGACGTCGCCGACTACATCCGCTTCCGCGCCGTGTGCCGGCTGTGGCGGCTGCGCTCGGTGGATCCCCTCTCCCGCGCCCTGGACTGCCGCTTCCTCCCCCGGCGGTGGATCATGCTCGACAAGGCGGCGCCCCCCCGCTGCCGCCGCTTCCTCTACCTCTCCACCGGCGAGTGCATCCGTACGGATCTCCCGGAGCTCGAGAGCCACACCCTGGTCGCGCTCGCCCCGGAGGGCCTCCTGCTGCTGCTCCACCAGCGCACCCTCCTCCTCCGCCTGCTCAACCCCCTCACCCGCCACCTCACCGACCTCCCGCCGGTCACCGCGCTGCTCACGCCGGAGCAACTGCGATCTTGGCATTCGGATGGGGGGTTAGAAGACGATCCGCTATTGGCGCGTGGCGTCGGTCTTGCATCCGCAACCACAGTGGCTCTCTTCCTCTGCCGCCCCAAGTTGATCGCCGTCGCTAAACCCGGCGATGAGTGCTGGGCCGTCGTCGTCGCCGACAAGAACCGCCCCTACATTGACTCGGCTTTGCCCTTCGCAGGGCGCTTCTACTGCGCCATCGGCGGCAGTGTCATGGTGCTGGACAGCTCTCCTTCTTCAGATCAGATCATAGAGGGCGGCCGCGGCTGGTCACCACCGCTCAGCCGAGCAAGCCCTTGCATTTCTCCCGGATGTCAGGAACTATTCACCTTGTGGACAATGGTGGGGAGTTTGATGCTGGTGTACCGTAAGATCCGCCAGAGCAATGTTGATGATGAATCGCGGCAAGGTGCTGCGAAATACGAGATGAAGTATGATGTTTACAGGGTGGATTTCGACGCCGGGGACTTGATCCCGGTCAAGGGGTTGGGCGGGCGAGCTGTGTTCTTGGGCCTGTGCCGCTCCGTCACTCTACTACCTGCAGAGGCTCGCAGCTGACACTCTCTACCTGGGATTCGATTGTCGTGAAAAGACTCAGATGAACGAAA TCGACGGTTACAATGTTGCAGATGGGAGTAGCGAGCCATGCCACCTCGACTCCATCTT CCGTGAGATGTCGCAGCAGGACGGTTACAGTGTTGCAGATGGAAGCAGCGAGCCATGCCACCTCGACTGCATCTTTCTTCAGATGTTGCAGCAGCCATACAGCTTCGTCAACTGCCTCTCCCACTGCATCCAGGGAATAGGCGATCATCTTGCCTAAGCTCGCGGATCATCCGGTGGTCGTTCGGTGGCGATCTGAACCTTGCATCCTTTGCTTTGGCATCACTTGTATCGTTGTTCCTTGCGATGAAACAGCATCTGTACCCCCCAAGTAATTAATTTATGAAGA TGTGCTTAC ]
[+] EMBL AU058144 [ GGCTCGCAGTTGAAACTCTCCACCTGGNATCCGATTGCCGTNAAAAGACTCAGATGAACGAAANCCGACGGTTACAATGTTGCAGATGGGAGTAGCGAGCCATGCCACCTCGACTCCATCTTCCCGTGAGATGTCGCAGCAGGACGGTTACAGTGTTGCAGATGGAAGCAGCGAGCCATGCCACCTCGACTGCATCTTTCTTCAGATGTTGCAGCAGCCATACAGCTTCGTCAACTGCCTCTCCCACTGCATCCAGGGAATAGGCGATCATCTTGCCTAAGCTCGCGGATCATCCGGTGGTCGTTCGGTGGCAATCTGAACCTTGCATCCTTTGCTTTGGCATCACTTGTATCGTTGTTCCTTGCGATGAAACAGCATCTGTACCCCCCAAGTAATTAATTTATGAAGATTGT NTTACGCGCTTATTTTTAAA]
consensusID : consensus_5501#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence
[NAATGGGAAGTAGGCGAGCNANTGCCAACCNCCGACNANCNTCCAACCGTGANATGNCNCAGCAGGCCGGTTATAGTGCTGCNGTTGGAAGCAGCGAGCCATGCCACCTCGACTGCATCTTTCTTCAGATGTTGNAGNAGCCATACCAGCTTCGTCAACTGCCTCTCCCACTGCATCCAGGGAATAGGCGATCATCTTGCCTAAGCTCGCGGATCATCCGGTGGNCGTACGGTGGCAATCTGAACCTTGCATNCTTTGCTTTGGCATCACTTGTAGCGTTGTTCCTTGCGATGAAACAGCATCTGTACCCCCNAAGTAAT]
[+] EMBL D42730 [NAATGGGAAGTAGGCGAGCNANTGCCAACCNCCGACNANCNTCCAACCGTGANATGNCNCAGCAGGCCGGTTATAGTGCTGCNGTTGGAAGCAGCGAGCCATGCCACCTCGACTGCATCTTTCTTCAGATGTTGNAGNAGCCATACCAGCTTCGTCAACTGCCTCTCCCACTGCATCCAGGGAATAGGCGATCATCTTGCCTAAGCTCGCGGATCATCCGGTGGNCGTACGGTGGCAATCTGAACCTTGCATNCTTTGCTTTGGCATCACTTGTAGCGTTGTTCCTTGCGATGAAACAGCATCTGTACCCCCNAAGTAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5501#0 AGCCGAGTTCCCCATCGCCATCGGTGGCGGCATCTCCGTGACCCCCTGCTCAAGTGGCGG 60
consensus_5501#1 ------------------------------------------------------------
consensus_5501#0 CGGCGGAGCGTGCGGGGAAGGAGGAGGTGGAGGATGGACTGGTCGAACCTTGGCGGGGAG 120
consensus_5501#1 ------------------------------------------------------------
consensus_5501#0 GGGCCGGCCGGCCTCATCGCCGAGCGCGTCCTCGCCAACGACGTCGCCGACTACATCCGC 180
consensus_5501#1 ------------------------------------------------------------
consensus_5501#0 TTCCGCGCCGTGTGCCGGCTGTGGCGGCTGCGCTCGGTGGATCCCCTCTCCCGCGCCCTG 240
consensus_5501#1 ------------------------------------------------------------
consensus_5501#0 GACTGCCGCTTCCTCCCCCGGCGGTGGATCATGCTCGACAAGGCGGCGCCCCCCCGCTGC 300
consensus_5501#1 ------------------------------------------------------------
consensus_5501#0 CGCCGCTTCCTCTACCTCTCCACCGGCGAGTGCATCCGTACGGATCTCCCGGAGCTCGAG 360
consensus_5501#1 ------------------------------------------------------------
consensus_5501#0 AGCCACACCCTGGTCGCGCTCGCCCCGGAGGGCCTCCTGCTGCTGCTCCACCAGCGCACC 420
consensus_5501#1 ------------------------------------------------------------
consensus_5501#0 CTCCTCCTCCGCCTGCTCAACCCCCTCACCCGCCACCTCACCGACCTCCCGCCGGTCACC 480
consensus_5501#1 ------------------------------------------------------------
consensus_5501#0 GCGCTGCTCACGCCGGAGCAACTGCGATCTTGGCATTCGGATGGGGGGTTAGAAGACGAT 540
consensus_5501#1 ------------------------------------------------------------
consensus_5501#0 CCGCTATTGGCGCGTGGCGTCGGTCTTGCATCCGCAACCACAGTGGCTCTCTTCCTCTGC 600
consensus_5501#1 ------------------------------------------------------------
consensus_5501#0 CGCCCCAAGTTGATCGCCGTCGCTAAACCCGGCGATGAGTGCTGGGCCGTCGTCGTCGCC 660
consensus_5501#1 ------------------------------------------------------------
consensus_5501#0 GACAAGAACCGCCCCTACATTGACTCGGCTTTGCCCTTCGCAGGGCGCTTCTACTGCGCC 720
consensus_5501#1 ------------------------------------------------------------
consensus_5501#0 ATCGGCGGCAGTGTCATGGTGCTGGACAGCTCTCCTTCTTCAGATCAGATCATAGAGGGC 780
consensus_5501#1 ------------------------------------------------------------
consensus_5501#0 GGCCGCGGCTGGTCACCACCGCTCAGCCGAGCAAGCCCTTGCATTTCTCCCGGATGTCAG 840
consensus_5501#1 ------------------------------------------------------------
consensus_5501#0 GAACTATTCACCTTGTGGACAATGGTGGGGAGTTTGATGCTGGTGTACCGTAAGATCCGC 900
consensus_5501#1 ------------------------------------------------------------
consensus_5501#0 CAGAGCAATGTTGATGATGAATCGCGGCAAGGTGCTGCGAAATACGAGATGAAGTATGAT 960
consensus_5501#1 ------------------------------------------------------------
consensus_5501#0 GTTTACAGGGTGGATTTCGACGCCGGGGACTTGATCCCGGTCAAGGGGTTGGGCGGGCGA 1020
consensus_5501#1 ------------------------------------------------------------
consensus_5501#0 GCTGTGTTCTTGGGCCTGTGCCGCTCCGTCACTCTACTACCTGCAGAGGCTCGCAGCTGA 1080
consensus_5501#1 ------------------------------------------------------------
consensus_5501#0 CACTCTCTACCTGGGATTCGATTGTCGTGAAAAGACTCAGATGAACGAAATCGACGGTTA 1140
consensus_5501#1 ------------------------------------------------------------
consensus_5501#0 CAATGTTGCAGATGGGAGTAGCGAGCCATGCCACCTCGACTCCATCTTCCGTGAGATGTC 1200
consensus_5501#1 NAATG--GGAAGTAGGCGAGCNANTGCCAACCNCCGACNANCNTCCAACCGTGANATGNC 58
**** * * * ** * * ** ** * * ****** *** *
consensus_5501#0 GCAGCAGGACGGTTACAGTGTTGCAGATGGAAGCAGCGAGCCATGCCACCTCGACTGCAT 1260
consensus_5501#1 NCAGCAGGCCGGTTATAGTGCTGCNGTTGGAAGCAGCGAGCCATGCCACCTCGACTGCAT 118
******* ****** **** *** * *********************************
consensus_5501#0 CTTTCTTCAGATGTTGCAGCAGCCATAC-AGCTTCGTCAACTGCCTCTCCCACTGCATCC 1319
consensus_5501#1 CTTTCTTCAGATGTTGNAGNAGCCATACCAGCTTCGTCAACTGCCTCTCCCACTGCATCC 178
**************** ** ******** *******************************
consensus_5501#0 AGGGAATAGGCGATCATCTTGCCTAAGCTCGCGGATCATCCGGTGGTCGTTCGGTGGCGA 1379
consensus_5501#1 AGGGAATAGGCGATCATCTTGCCTAAGCTCGCGGATCATCCGGTGGNCGTACGGTGGCAA 238
********************************************** *** ******* *
consensus_5501#0 TCTGAACCTTGCATCCTTTGCTTTGGCATCACTTGTATCGTTGTTCCTTGCGATGAAACA 1439
consensus_5501#1 TCTGAACCTTGCATNCTTTGCTTTGGCATCACTTGTAGCGTTGTTCCTTGCGATGAAACA 298
************** ********************** **********************
consensus_5501#0 GCATCTGTACCCCCCAAGTAATTAATTTATGAAGATGTGCTTACGCGCTTATTTTTAAA 1498
consensus_5501#1 GCATCTGTACCCCCNAAGTAAT------------------------------------- 320
************** *******
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||