These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5501#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1498 fasta sequence [AGCCGAGTTCCCCATCGCCATCGGTGGCGGCATCTCCGTGACCCCCTGCTCAAGTGGCGGCGGCGGAGCGTGCGGGGAAGGAGGAGGTGGAGGATGGACTGGTCGAACCTTGGCGGGGAGGGGCCGGCCGGCCTCATCGCCGAGCGCGTCCTCGCCAACGACGTCGCCGACTACATCCGCTTCCGCGCCGTGTGCCGGCTGTGGCGGCTGCGCTCGGTGGATCCCCTCTCCCGCGCCCTGGACTGCCGCTTCCTCCCCCGGCGGTGGATCATGCTCGACAAGGCGGCGCCCCCCCGCTGCCGCCGCTTCCTCTACCTCTCCACCGGCGAGTGCATCCGTACGGATCTCCCGGAGCTCGAGAGCCACACCCTGGTCGCGCTCGCCCCGGAGGGCCTCCTGCTGCTGCTCCACCAGCGCACCCTCCTCCTCCGCCTGCTCAACCCCCTCACCCGCCACCTCACCGACCTCCCGCCGGTCACCGCGCTGCTCACGCCGGAGCAACTGCGATCTTGGCATTCGGATGGGGGGTTAGAAGACGATCCGCTATTGGCGCGTGGCGTCGGTCTTGCATCCGCAACCACAGTGGCTCTCTTCCTCTGCCGCCCCAAGTTGATCGCCGTCGCTAAACCCGGCGATGAGTGCTGGGCCGTCGTCGTCGCCGACAAGAACCGCCCCTACATTGACTCGGCTTTGCCCTTCGCAGGGCGCTTCTACTGCGCCATCGGCGGCAGTGTCATGGTGCTGGACAGCTCTCCTTCTTCAGATCAGATCATAGAGGGCGGCCGCGGCTGGTCACCACCGCTCAGCCGAGCAAGCCCTTGCATTTCTCCCGGATGTCAGGAACTATTCACCTTGTGGACAATGGTGGGGAGTTTGATGCTGGTGTACCGTAAGATCCGCCAGAGCAATGTTGATGATGAATCGCGGCAAGGTGCTGCGAAATACGAGATGAAGTATGATGTTTACAGGGTGGATTTCGACGCCGGGGACTTGATCCCGGTCAAGGGGTTGGGCGGGCGAGCTGTGTTCTTGGGCCTGTGCCGCTCCGTCACTCTACTACCTGCAGAGGCTCGCAGCTGACACTCTCTACCTGGGATTCGATTGTCGTGAAAAGACTCAGATGAACGAAA-TCGACGGTTACAATGTTGCAGATGGGAGTAGCGAGCCATGCCACCTCGACTCCATCTT-CCGTGAGATGTCGCAGCAGGACGGTTACAGTGTTGCAGATGGAAGCAGCGAGCCATGCCACCTCGACTGCATCTTTCTTCAGATGTTGCAGCAGCCATACAGCTTCGTCAACTGCCTCTCCCACTGCATCCAGGGAATAGGCGATCATCTTGCCTAAGCTCGCGGATCATCCGGTGGTCGTTCGGTGGCGATCTGAACCTTGCATCCTTTGCTTTGGCATCACTTGTATCGTTGTTCCTTGCGATGAAACAGCATCTGTACCCCCCAAGTAATTAATTTATGAAGA-TGTGCTTACGCGCTTATTTTTAAA] [+] EMBL AK072209 [AGCCGAGTTCCCCATCGCCATCGGTGGCGGCATCTCCGTGACCCCCTGCTCAAGTGGCGGCGGCGGAGCGTGCGGGGAAGGAGGAGGTGGAGGATGGACTGGTCGAACCTTGGCGGGGAGGGGCCGGCCGGCCTCATCGCCGAGCGCGTCCTCGCCAACGACGTCGCCGACTACATCCGCTTCCGCGCCGTGTGCCGGCTGTGGCGGCTGCGCTCGGTGGATCCCCTCTCCCGCGCCCTGGACTGCCGCTTCCTCCCCCGGCGGTGGATCATGCTCGACAAGGCGGCGCCCCCCCGCTGCCGCCGCTTCCTCTACCTCTCCACCGGCGAGTGCATCCGTACGGATCTCCCGGAGCTCGAGAGCCACACCCTGGTCGCGCTCGCCCCGGAGGGCCTCCTGCTGCTGCTCCACCAGCGCACCCTCCTCCTCCGCCTGCTCAACCCCCTCACCCGCCACCTCACCGACCTCCCGCCGGTCACCGCGCTGCTCACGCCGGAGCAACTGCGATCTTGGCATTCGGATGGGGGGTTAGAAGACGATCCGCTATTGGCGCGTGGCGTCGGTCTTGCATCCGCAACCACAGTGGCTCTCTTCCTCTGCCGCCCCAAGTTGATCGCCGTCGCTAAACCCGGCGATGAGTGCTGGGCCGTCGTCGTCGCCGACAAGAACCGCCCCTACATTGACTCGGCTTTGCCCTTCGCAGGGCGCTTCTACTGCGCCATCGGCGGCAGTGTCATGGTGCTGGACAGCTCTCCTTCTTCAGATCAGATCATAGAGGGCGGCCGCGGCTGGTCACCACCGCTCAGCCGAGCAAGCCCTTGCATTTCTCCCGGATGTCAGGAACTATTCACCTTGTGGACAATGGTGGGGAGTTTGATGCTGGTGTACCGTAAGATCCGCCAGAGCAATGTTGATGATGAATCGCGGCAAGGTGCTGCGAAATACGAGATGAAGTATGATGTTTACAGGGTGGATTTCGACGCCGGGGACTTGATCCCGGTCAAGGGGTTGGGCGGGCGAGCTGTGTTCTTGGGCCTGTGCCGCTCCGTCACTCTACTACCTGCAGAGGCTCGCAGCTGACACTCTCTACCTGGGATTCGATTGTCGTGAAAAGACTCAGATGAACGAAA TCGACGGTTACAATGTTGCAGATGGGAGTAGCGAGCCATGCCACCTCGACTCCATCTT CCGTGAGATGTCGCAGCAGGACGGTTACAGTGTTGCAGATGGAAGCAGCGAGCCATGCCACCTCGACTGCATCTTTCTTCAGATGTTGCAGCAGCCATACAGCTTCGTCAACTGCCTCTCCCACTGCATCCAGGGAATAGGCGATCATCTTGCCTAAGCTCGCGGATCATCCGGTGGTCGTTCGGTGGCGATCTGAACCTTGCATCCTTTGCTTTGGCATCACTTGTATCGTTGTTCCTTGCGATGAAACAGCATCTGTACCCCCCAAGTAATTAATTTATGAAGA TGTGCTTAC ] [+] EMBL AU058144 [ GGCTCGCAGTTGAAACTCTCCACCTGGNATCCGATTGCCGTNAAAAGACTCAGATGAACGAAANCCGACGGTTACAATGTTGCAGATGGGAGTAGCGAGCCATGCCACCTCGACTCCATCTTCCCGTGAGATGTCGCAGCAGGACGGTTACAGTGTTGCAGATGGAAGCAGCGAGCCATGCCACCTCGACTGCATCTTTCTTCAGATGTTGCAGCAGCCATACAGCTTCGTCAACTGCCTCTCCCACTGCATCCAGGGAATAGGCGATCATCTTGCCTAAGCTCGCGGATCATCCGGTGGTCGTTCGGTGGCAATCTGAACCTTGCATCCTTTGCTTTGGCATCACTTGTATCGTTGTTCCTTGCGATGAAACAGCATCTGTACCCCCCAAGTAATTAATTTATGAAGATTGT NTTACGCGCTTATTTTTAAA] consensusID : consensus_5501#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence [NAATGGGAAGTAGGCGAGCNANTGCCAACCNCCGACNANCNTCCAACCGTGANATGNCNCAGCAGGCCGGTTATAGTGCTGCNGTTGGAAGCAGCGAGCCATGCCACCTCGACTGCATCTTTCTTCAGATGTTGNAGNAGCCATACCAGCTTCGTCAACTGCCTCTCCCACTGCATCCAGGGAATAGGCGATCATCTTGCCTAAGCTCGCGGATCATCCGGTGGNCGTACGGTGGCAATCTGAACCTTGCATNCTTTGCTTTGGCATCACTTGTAGCGTTGTTCCTTGCGATGAAACAGCATCTGTACCCCCNAAGTAAT] [+] EMBL D42730 [NAATGGGAAGTAGGCGAGCNANTGCCAACCNCCGACNANCNTCCAACCGTGANATGNCNCAGCAGGCCGGTTATAGTGCTGCNGTTGGAAGCAGCGAGCCATGCCACCTCGACTGCATCTTTCTTCAGATGTTGNAGNAGCCATACCAGCTTCGTCAACTGCCTCTCCCACTGCATCCAGGGAATAGGCGATCATCTTGCCTAAGCTCGCGGATCATCCGGTGGNCGTACGGTGGCAATCTGAACCTTGCATNCTTTGCTTTGGCATCACTTGTAGCGTTGTTCCTTGCGATGAAACAGCATCTGTACCCCCNAAGTAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5501#0 AGCCGAGTTCCCCATCGCCATCGGTGGCGGCATCTCCGTGACCCCCTGCTCAAGTGGCGG 60 consensus_5501#1 ------------------------------------------------------------ consensus_5501#0 CGGCGGAGCGTGCGGGGAAGGAGGAGGTGGAGGATGGACTGGTCGAACCTTGGCGGGGAG 120 consensus_5501#1 ------------------------------------------------------------ consensus_5501#0 GGGCCGGCCGGCCTCATCGCCGAGCGCGTCCTCGCCAACGACGTCGCCGACTACATCCGC 180 consensus_5501#1 ------------------------------------------------------------ consensus_5501#0 TTCCGCGCCGTGTGCCGGCTGTGGCGGCTGCGCTCGGTGGATCCCCTCTCCCGCGCCCTG 240 consensus_5501#1 ------------------------------------------------------------ consensus_5501#0 GACTGCCGCTTCCTCCCCCGGCGGTGGATCATGCTCGACAAGGCGGCGCCCCCCCGCTGC 300 consensus_5501#1 ------------------------------------------------------------ consensus_5501#0 CGCCGCTTCCTCTACCTCTCCACCGGCGAGTGCATCCGTACGGATCTCCCGGAGCTCGAG 360 consensus_5501#1 ------------------------------------------------------------ consensus_5501#0 AGCCACACCCTGGTCGCGCTCGCCCCGGAGGGCCTCCTGCTGCTGCTCCACCAGCGCACC 420 consensus_5501#1 ------------------------------------------------------------ consensus_5501#0 CTCCTCCTCCGCCTGCTCAACCCCCTCACCCGCCACCTCACCGACCTCCCGCCGGTCACC 480 consensus_5501#1 ------------------------------------------------------------ consensus_5501#0 GCGCTGCTCACGCCGGAGCAACTGCGATCTTGGCATTCGGATGGGGGGTTAGAAGACGAT 540 consensus_5501#1 ------------------------------------------------------------ consensus_5501#0 CCGCTATTGGCGCGTGGCGTCGGTCTTGCATCCGCAACCACAGTGGCTCTCTTCCTCTGC 600 consensus_5501#1 ------------------------------------------------------------ consensus_5501#0 CGCCCCAAGTTGATCGCCGTCGCTAAACCCGGCGATGAGTGCTGGGCCGTCGTCGTCGCC 660 consensus_5501#1 ------------------------------------------------------------ consensus_5501#0 GACAAGAACCGCCCCTACATTGACTCGGCTTTGCCCTTCGCAGGGCGCTTCTACTGCGCC 720 consensus_5501#1 ------------------------------------------------------------ consensus_5501#0 ATCGGCGGCAGTGTCATGGTGCTGGACAGCTCTCCTTCTTCAGATCAGATCATAGAGGGC 780 consensus_5501#1 ------------------------------------------------------------ consensus_5501#0 GGCCGCGGCTGGTCACCACCGCTCAGCCGAGCAAGCCCTTGCATTTCTCCCGGATGTCAG 840 consensus_5501#1 ------------------------------------------------------------ consensus_5501#0 GAACTATTCACCTTGTGGACAATGGTGGGGAGTTTGATGCTGGTGTACCGTAAGATCCGC 900 consensus_5501#1 ------------------------------------------------------------ consensus_5501#0 CAGAGCAATGTTGATGATGAATCGCGGCAAGGTGCTGCGAAATACGAGATGAAGTATGAT 960 consensus_5501#1 ------------------------------------------------------------ consensus_5501#0 GTTTACAGGGTGGATTTCGACGCCGGGGACTTGATCCCGGTCAAGGGGTTGGGCGGGCGA 1020 consensus_5501#1 ------------------------------------------------------------ consensus_5501#0 GCTGTGTTCTTGGGCCTGTGCCGCTCCGTCACTCTACTACCTGCAGAGGCTCGCAGCTGA 1080 consensus_5501#1 ------------------------------------------------------------ consensus_5501#0 CACTCTCTACCTGGGATTCGATTGTCGTGAAAAGACTCAGATGAACGAAATCGACGGTTA 1140 consensus_5501#1 ------------------------------------------------------------ consensus_5501#0 CAATGTTGCAGATGGGAGTAGCGAGCCATGCCACCTCGACTCCATCTTCCGTGAGATGTC 1200 consensus_5501#1 NAATG--GGAAGTAGGCGAGCNANTGCCAACCNCCGACNANCNTCCAACCGTGANATGNC 58 **** * * * ** * * ** ** * * ****** *** * consensus_5501#0 GCAGCAGGACGGTTACAGTGTTGCAGATGGAAGCAGCGAGCCATGCCACCTCGACTGCAT 1260 consensus_5501#1 NCAGCAGGCCGGTTATAGTGCTGCNGTTGGAAGCAGCGAGCCATGCCACCTCGACTGCAT 118 ******* ****** **** *** * ********************************* consensus_5501#0 CTTTCTTCAGATGTTGCAGCAGCCATAC-AGCTTCGTCAACTGCCTCTCCCACTGCATCC 1319 consensus_5501#1 CTTTCTTCAGATGTTGNAGNAGCCATACCAGCTTCGTCAACTGCCTCTCCCACTGCATCC 178 **************** ** ******** ******************************* consensus_5501#0 AGGGAATAGGCGATCATCTTGCCTAAGCTCGCGGATCATCCGGTGGTCGTTCGGTGGCGA 1379 consensus_5501#1 AGGGAATAGGCGATCATCTTGCCTAAGCTCGCGGATCATCCGGTGGNCGTACGGTGGCAA 238 ********************************************** *** ******* * consensus_5501#0 TCTGAACCTTGCATCCTTTGCTTTGGCATCACTTGTATCGTTGTTCCTTGCGATGAAACA 1439 consensus_5501#1 TCTGAACCTTGCATNCTTTGCTTTGGCATCACTTGTAGCGTTGTTCCTTGCGATGAAACA 298 ************** ********************** ********************** consensus_5501#0 GCATCTGTACCCCCCAAGTAATTAATTTATGAAGATGTGCTTACGCGCTTATTTTTAAA 1498 consensus_5501#1 GCATCTGTACCCCCNAAGTAAT------------------------------------- 320 ************** ******* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||