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Oryza sativa
cluster # 5503 cluster # 5503       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5503#0 length = 844 sequences # 3  

consensusID : consensus_5503#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 844
fasta sequence
                              [CTCTTCGCTTCCAAATTCGCGCCGCTGATCCCCCGGCTCCGCCGCCTCTCCACCGCGGCGGCGGCGGCGACGGCGACGGCCGCCGGGGAGGACCCGAAGCTGTCGCGCATAGCGGACCAGCTCCTGGAACTCTCCCCTGCCGAGCTCGACGACTACTCGGCGCTCCTGCGGCTCAAGCTCCGCCTCTCGCTCACGTCGAGCGCCGCATCGGGGGCCGCGGCCACTGGCGCGGCCGGAGACGCCGCCTCCGGCTCCGCCGGCGCGGAGGAGGCCGCGGCGGTGAAGACGTCGTTCGATGTCAAGATCGAGAAGTACGAGGCGGCGGCGAAGATAAAGATCATCAAGGAGGTGCGCGCGGTGACGGACCTGGGGCTGAAGGAGGCGAAGGAGCTCGTGGAGAAGGCGCCGGTCGTGGTGCGATCCGGGCTTCCCAAGGAGGAGGCCGAGGCGCTCGCCGCCAAGCTCAAGGCCGCCGGCGCCGCCGTCGCGCTCGAGTGATCCCGAGCGGAAGAACGGGTTCGCCCTTTTTATTTTTGGTTCCTACTGTTATCCTTAGATCGAAG-ATGCTACGCTTGTGGGTGCCTTGGTTTGTTTGGATTGAAATTCGATGCAATTGGGGCAATTGATCAGGTGTATAAGAAGATGCAGGTCTTGATTGCATTGTTGTAGCTTGCCTAGTTACTGATTTATCTTGTTGAATCACGCAATAATGTCTATTTTAGTGGTCTGGGATCACTGGATGGTATATCTGATTAGCTGAATTGACTTGTCTGGGGGGGCTTACAGAGATACAATTGTAGTTGGCTCTACTGTATCGAGTGATTCGCATATGGTTAGCTTCAGT]

[+] EMBL AK062899             [CTCTTCGCTTCCAAATTCGCGCCGCTGATCCCCCGGCTCCGCCGCCTCTCCACCGCGGCGGCGGCGGCGACGGCGACGGCCGCCGGGGAGGACCCGAAGCTGTCGCGCATAGCGGACCAGCTCCTGGAACTCTCCCCTGCCGAGCTCGACGACTACTCGGCGCTCCTGCGGCTCAAGCTCCGCCTCTCGCTCACGTCGAGCGCCGCATCGGGGGCCGCGGCCACTGGCGCGGCCGGAGACGCCGCCTCCGGCTCCGCCGGCGCGGAGGAGGCCGCGGCGGTGAAGACGTCGTTCGATGTCAAGATCGAGAAGTACGAGGCGGCGGCGAAGATAAAGATCATCAAGGAGGTGCGCGCGGTGACGGACCTGGGGCTGAAGGAGGCGAAGGAGCTCGTGGAGAAGGCGCCGGTCGTGGTGCGATCCGGGCTTCCCAAGGAGGAGGCCGAGGCGCTCGCCGCCAAGCTCAAGGCCGCCGGCGCCGCCGTCGCGCTCGAGTGATCCCGAGCGGAAGAACGGGTTCGCCCTTTTTATTTTTGGTTCCTACTGTTATCCTTAGATCGAAG ATGCTACGCTTGTGGGTGCCTTGGTTTGTTTGGATTGAAATTCGATGCAATTGGGGCAATTGATCAGGTGTATAAGAAGATGCAGGTCTTGATTGCATTGTTGTAGCTTGCCTAGTTACTGATTTATCTTGTTGAATCACGCAATAATGTCTATTTTAGTGGTCTGGGATCACTGGATGGTATATCTGATTAGCTGAATTGACTTGTCTGGGGGGGCTTACAGAGATACAATTGTAGTTGGCTCTACTGTATCGAGTGATTCGCATATGGTTAGCTTCAGT]
[+] EMBL AU172964             [                                         CCGCCTCTCCACCGCGGCGGCGGCGGCGACGGCGACGGCCGCCGGGGAGGACCCGAAGCTGTCGCGCATAGCGGACCAGCTCCTGGAACTCTCCCCTGCCGAGCTCGACGACTACTCGGCGCTCCTGCGGCTCAAGCTCCGCCTCTCGCTCACGTCGAGCGCCGCATCGGGGGCCGCGGCCACTGGCGCGGCCGGAGACGCCGCCTCCGGCTCCGCCGGCGCGGAGGAGGCCGCGGCGGTGAAGACGTCGTTCGATGTCAAGATCGAGAAGTACGAGGCGGCGGCGAAGATAAAGATCATCAAGGAGGTGCGCGCGGTGACGGACCTGGGGCTGAAGGAGGCGAAGGAGCTCGTGGAGAAGGCGCCGGTCGTGGTGCGATCCGGGCTTCCCAAGGAGGAGGCCGAGGCGCTCGCCGCCAAGCTCAAGGCC                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU058363             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTATTTTTGGTTCCTACTGTTATCCTTAGATCGAAGTAT NTACGCTTGTGGGTGCCTTGGTTTGTTTGGATTGANATTCGATGCAATTGGGGCAATTGATCAGGTGTNTAAGAAGATGCAGGTCTTGATTNCATTGTTGTAGCTTGCCTANTTACTGATTTATCTTGTTGAATCACGCAATAATGTCTATTTTAGTGGTCTGGGNTCNCTGGNTGGTnaaaan                                                                                              ]


>consensus_5503#0 CTCTTCGCTTCCAAATTCGCGCCGCTGATCCCCCGGCTCCGCCGCCTCTCCACCGCGGCG GCGGCGGCGACGGCGACGGCCGCCGGGGAGGACCCGAAGCTGTCGCGCATAGCGGACCAG CTCCTGGAACTCTCCCCTGCCGAGCTCGACGACTACTCGGCGCTCCTGCGGCTCAAGCTC CGCCTCTCGCTCACGTCGAGCGCCGCATCGGGGGCCGCGGCCACTGGCGCGGCCGGAGAC GCCGCCTCCGGCTCCGCCGGCGCGGAGGAGGCCGCGGCGGTGAAGACGTCGTTCGATGTC AAGATCGAGAAGTACGAGGCGGCGGCGAAGATAAAGATCATCAAGGAGGTGCGCGCGGTG ACGGACCTGGGGCTGAAGGAGGCGAAGGAGCTCGTGGAGAAGGCGCCGGTCGTGGTGCGA TCCGGGCTTCCCAAGGAGGAGGCCGAGGCGCTCGCCGCCAAGCTCAAGGCCGCCGGCGCC GCCGTCGCGCTCGAGTGATCCCGAGCGGAAGAACGGGTTCGCCCTTTTTATTTTTGGTTC CTACTGTTATCCTTAGATCGAAGATGCTACGCTTGTGGGTGCCTTGGTTTGTTTGGATTG AAATTCGATGCAATTGGGGCAATTGATCAGGTGTATAAGAAGATGCAGGTCTTGATTGCA TTGTTGTAGCTTGCCTAGTTACTGATTTATCTTGTTGAATCACGCAATAATGTCTATTTT AGTGGTCTGGGATCACTGGATGGTATATCTGATTAGCTGAATTGACTTGTCTGGGGGGGC TTACAGAGATACAATTGTAGTTGGCTCTACTGTATCGAGTGATTCGCATATGGTTAGCTT CAGT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)