cluster # 5504

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Oryza sativa
cluster # 5504 cluster # 5504 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5504#0 length = 683 sequences # 1

consensus_5504#1 length = 676 sequences # 2

consensusID : consensus_5504#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence

                              [TTTTTTTTTTTTTAAAACCAAAAACCAAACTTTGGTCTGAACCAAGCCCACCCAAAGCCAAACCCATATCCAGCGGACTACGCCCTAACCCTATTGTTTTACCACATACAACTCGGGTTTAGTACTCCCTTGGACAATAACTGCCACAATCCCAAAGGGTAACTAACTGTGGGAGAATGACCTACACCCGAATACTAAGACCTGTCCCGATCCCTTAATATTAAGATGGCTCATCCACCTAAAAGCCATATACTTTTGCGGCGCACGAAAGATTTCGGAAGGGATACCCAATACCGGGGCCTAATGTGGAGTTACGAGCTAACTACGGGGGGAATACGGAGTTGGACCATACATACCCCCTCCTATCCGAAACTTAGCACTGTATCAAAACTGAGGGAAAGTATACTACTGCACAAAATCTGGTTAGCCCCGAGGCCGTAATCGTTCGACCAGCAACCATTCCAGGTTCGGTATATTAGGACTGGGAGGAAACAGTCAACCTGTATGTGTAGCCAAAACAGATCTAGACACTGGGTGGCCAACTAACAGCCACGAATCCCGCTTGGAACATTTGGAATCGACCACAGATTACTATGAAGTTTTGCACATTCACTGGCCAATAGTCTCGGGGACACCAAGACTGTGACTCTATAACAAACACCATTCGAGGTAAACGCGGTGAC]

[+] EMBL CA761830             [TTTTTTTTTTTTTAAAACCAAAAACCAAACTTTGGTCTGAACCAAGCCCACCCAAAGCCAAACCCATATCCAGCGGACTACGCCCTAACCCTATTGTTTTACCACATACAACTCGGGTTTAGTACTCCCTTGGACAATAACTGCCACAATCCCAAAGGGTAACTAACTGTGGGAGAATGACCTACACCCGAATACTAAGACCTGTCCCGATCCCTTAATATTAAGATGGCTCATCCACCTAAAAGCCATATACTTTTGCGGCGCACGAAAGATTTCGGAAGGGATACCCAATACCGGGGCCTAATGTGGAGTTACGAGCTAACTACGGGGGGAATACGGAGTTGGACCATACATACCCCCTCCTATCCGAAACTTAGCACTGTATCAAAACTGAGGGAAAGTATACTACTGCACAAAATCTGGTTAGCCCCGAGGCCGTAATCGTTCGACCAGCAACCATTCCAGGTTCGGTATATTAGGACTGGGAGGAAACAGTCAACCTGTATGTGTAGCCAAAACAGATCTAGACACTGGGTGGCCAACTAACAGCCACGAATCCCGCTTGGAACATTTGGAATCGACCACAGATTACTATGAAGTTTTGCACATTCACTGGCCAATAGTCTCGGGGACACCAAGACTGTGACTCTATAACAAACACCATTCGAGGTAAACGCGGTGAC]




>consensus_5504#0
TTTTTTTTTTTTTAAAACCAAAAACCAAACTTTGGTCTGAACCAAGCCCACCCAAAGCCA
AACCCATATCCAGCGGACTACGCCCTAACCCTATTGTTTTACCACATACAACTCGGGTTT
AGTACTCCCTTGGACAATAACTGCCACAATCCCAAAGGGTAACTAACTGTGGGAGAATGA
CCTACACCCGAATACTAAGACCTGTCCCGATCCCTTAATATTAAGATGGCTCATCCACCT
AAAAGCCATATACTTTTGCGGCGCACGAAAGATTTCGGAAGGGATACCCAATACCGGGGC
CTAATGTGGAGTTACGAGCTAACTACGGGGGGAATACGGAGTTGGACCATACATACCCCC
TCCTATCCGAAACTTAGCACTGTATCAAAACTGAGGGAAAGTATACTACTGCACAAAATC
TGGTTAGCCCCGAGGCCGTAATCGTTCGACCAGCAACCATTCCAGGTTCGGTATATTAGG
ACTGGGAGGAAACAGTCAACCTGTATGTGTAGCCAAAACAGATCTAGACACTGGGTGGCC
AACTAACAGCCACGAATCCCGCTTGGAACATTTGGAATCGACCACAGATTACTATGAAGT
TTTGCACATTCACTGGCCAATAGTCTCGGGGACACCAAGACTGTGACTCTATAACAAACA
CCATTCGAGGTAAACGCGGTGAC

consensusID : consensus_5504#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 676
fasta sequence

                              [TTTTTTTTTTTTTAAAACCAAAATCCAAACTTTGTTCTGATCCAAACCCACCCGAAACCAAACACATATAAAACTGACAACGCCCTAACCCTATTGTTCTACCACAAACTACTCCGGTTTAGTTCTCCCTTGGACAATAACTCCCACCATCCCAAAGGGTAACAAACTTTGGGACGAATGAAATACACCCGAATACTAATTCTGATCCCATCCATAATATTAAGATGGCTCATCCACCTAAAAGCCATATACTTTGTCAACGCACGAAATATTTCGCAAGGGATACCCAAACCACGGCCTAATGTAGTGTTACCAGCTAACTACGGGGGGGATACTGACTTGGTCCAACATACCCCCTCCATCACGAAACTTACCACTGTATCAAAACTGACGGAAAGCATACTAGTCCAAAAAATCTGGCTAGCCCCTAGGCCATAATCGTTGATCCAAATAACCATTCCAAGTTTGGTATATTTTGACTCGGAGGAAATAGTTAACCTGTATATGTAGCCAAAACACCACTCCACACTGGGTGGCCAACTAGCAGTCCACGAATCCCGTATGAAACATTTGGAATCGACCACAGATTACTTTGAAATTTTGCACATTCACTGGCCAATGTCCTCGGGGAAACCAAGACTGTAAATCTATAACACAACAAGATTCGAAGTAAACG]

[+] EMBL CA761818             [TTTTTTTTTTTTTAAAACCAAAATCCAAACTTTGTTCTGATCCAAACCCACCCGAAACCAAACACATATAAAACTGACAACGCCCTAACCCTATTGTTCTACCACAAACTACTCCGGTTTAGTTCTCCCTTGGACAATAACTCCCACCATCCCAAAGGGTAACAAACTTTGGGACGAATGAAATACACCCGAATACTAATTCTGATCCCATCCATAATATTAAGATGGCTCATCCACCTAAAAGCCATATACTTTGTCAACGCACGAAATATTTCGCAAGGGATACCCAAACCACGGCCTAATGTAGTGTTACCAGCTAACTACGGGGGGGATACTGACTTGGTCCAACATACCCCCTCCATCACGAAACTTACCACTGTATCAAAACTGACGGAAAGCATACTAGTCCAAAAAATCTGGCTAGCCCCTAGGCCATAATCGTTGATCCAAATAACCATTCCAAGTTTGGTATATTTTGACTCGGAGGAAATAGTTAACCTGTATATGTAGCCAAAACACCACTCCACACTGGGTGGCCAACTAGCAGTCCACGAATCCCGTATGAAACATTTGGAATCGACCACAGATTACTTTGAAATTTTGCACATTCACTGGCCAATGTCCTCGGGGAAACCAAGACTGTAAATCTATAACACAACAAGATTCGAAGTAAACG]
[+] EMBL CA761817             [TTTTTTTTTTTTTAAAACCAAAATCCAAACTTTGTTCTGATCCAAACCCACCCGAAACCAAACACATATAAAACTGACAACGCCCTAACCCTATTGTTCTACCACAAACTACTCCGGTTTAGTTCTCCCTTGGACAATAACTCCCACCATCCCAAAGGGTAACAAACTTTGGGACGAATGAAATACACCCGAATACTAATTCTGATCCCATCCATAATATTAAGATGGCTCATCCACCTAAAAGCCATATACTTTGTCAACGCACGAAATATTTCGCAAGGGATACCCAAACCACGGCCTAATGTAGTGTTACCAGCTAACTACGGGGGGGATACTGACTTGGTCCAACATACCCCCTCCATCACGAAACTTACCACTGTATCAAAACTGACGGAAAGCATACTAGTCCAAAAAATCTGGCTAGCCCCTAGGCCATAATCGTTGATCCAAATAACCATTCCAAGTTTGGTATATTTTGACTCGGAGGAAATAGTTAACCTGTATATGTAGCCAAAACACCACTCCACACTGGGTGGCCAACTAGCAGTCCACGAATCCCGTATGAAACATTTGGAATCGACCACAGATTACTTTGAAATTTTGCACATTCACTGGCCAATGTCCTCGGGGAAACCAAGACTGTAAATCTATAACACAACAAGATTCGAAGTAAACG]




>consensus_5504#1
TTTTTTTTTTTTTAAAACCAAAATCCAAACTTTGTTCTGATCCAAACCCACCCGAAACCA
AACACATATAAAACTGACAACGCCCTAACCCTATTGTTCTACCACAAACTACTCCGGTTT
AGTTCTCCCTTGGACAATAACTCCCACCATCCCAAAGGGTAACAAACTTTGGGACGAATG
AAATACACCCGAATACTAATTCTGATCCCATCCATAATATTAAGATGGCTCATCCACCTA
AAAGCCATATACTTTGTCAACGCACGAAATATTTCGCAAGGGATACCCAAACCACGGCCT
AATGTAGTGTTACCAGCTAACTACGGGGGGGATACTGACTTGGTCCAACATACCCCCTCC
ATCACGAAACTTACCACTGTATCAAAACTGACGGAAAGCATACTAGTCCAAAAAATCTGG
CTAGCCCCTAGGCCATAATCGTTGATCCAAATAACCATTCCAAGTTTGGTATATTTTGAC
TCGGAGGAAATAGTTAACCTGTATATGTAGCCAAAACACCACTCCACACTGGGTGGCCAA
CTAGCAGTCCACGAATCCCGTATGAAACATTTGGAATCGACCACAGATTACTTTGAAATT
TTGCACATTCACTGGCCAATGTCCTCGGGGAAACCAAGACTGTAAATCTATAACACAACA
AGATTCGAAGTAAACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5504#0      TTTTTTTTTTTTTAAAACCAAAAACCAAACTTTGGTCTGAACCAAGCCCACCCAAAGCCA 60
consensus_5504#1      TTTTTTTTTTTTTAAAACCAAAATCCAAACTTTGTTCTGATCCAAACCCACCCGAAACCA 60
                      *********************** ********** ***** **** ******* ** ***

consensus_5504#0      AACCCATATCCAGCGGACTACGCCCTAACCCTATTGTTTTACCACATACAACTCGGGTTT 120
consensus_5504#1      AACACATATAAAACTGACAACGCCCTAACCCTATTGTTCTACCACAAACTACTCCGGTTT 120
                      *** *****  * * *** ******************* ******* ** **** *****

consensus_5504#0      AGTACTCCCTTGGACAATAACTGCCACAATCCCAAAGGGTAACTAACTGTGGGA-GAATG 179
consensus_5504#1      AGTTCTCCCTTGGACAATAACTCCCACCATCCCAAAGGGTAACAAACTTTGGGACGAATG 180
                      *** ****************** **** *************** **** ***** *****

consensus_5504#0      ACCTACACCCGAATACTAAGACCTGTCCCGATCCCTTAATATTAAGATGGCTCATCCACC 239
consensus_5504#1      AAATACACCCGAATACTAATTCTGATCCCA--TCCATAATATTAAGATGGCTCATCCACC 238
                      *  ****************  *   ****    ** ************************

consensus_5504#0      TAAAAGCCATATACTTTTGCGGCGCACGAAAGATTTCGGAAGGGATACCCAATACCGGGG 299
consensus_5504#1      TAAAAGCCATATACTTTGTCAACGCACGAAATATTTCGCAAGGGATACCCAA-ACCACGG 297
                      *****************  *  ********* ****** ************* ***  **

consensus_5504#0      CCTAATGTGGAGTTACGAGCTAACTACGGGGGGAATACGGAGTTGGACCATACATACCCC 359
consensus_5504#1      CCTAATGTAGTGTTACCAGCTAACTACGGGGGGGATACTGACTTGGTCCA-ACATACCCC 356
                      ******** * ***** **************** **** ** **** *** *********

consensus_5504#0      CTCCTATCCGAAACTTAGCACTGTATCAAAACTGAGGGAAAGTATACTACTGCACAAAAT 419
consensus_5504#1      CTCCATCACGAAACTTACCACTGTATCAAAACTGACGGAAAGCATACTAGTCCAAAAAAT 416
                      ****    ********* ***************** ****** ****** * ** *****

consensus_5504#0      CTGGTTAGCCCCGAGGCCGTAATCGTTCGACCAG-CAACCATTCCAGGTTCGGTATATTA 478
consensus_5504#1      CTGGCTAGCCCCTAGGCCATAATCGTTGATCCAAATAACCATTCCAAGTTTGGTATATTT 476
                      **** ******* ***** ********   ***   ********** *** ******** 

consensus_5504#0      GGACTGGGAGGAAACAGTCAACCTGTATGTGTAGCCAAAACAGATCTAGACACTGGGTGG 538
consensus_5504#1      TGACTCGGAGGAAATAGTTAACCTGTATATGTAGCCAAAACACCACTCCACACTGGGTGG 536
                       **** ******** *** ********* *************   **  ***********

consensus_5504#0      CCAACTAACAG-CCACGAATCCCGCTTGGAACATTTGGAATCGACCACAGATTACTATGA 597
consensus_5504#1      CCAACTAGCAGTCCACGAATCCCGTATGAAACATTTGGAATCGACCACAGATTACTTTGA 596
                      ******* *** ************  ** *************************** ***

consensus_5504#0      AGTTTTGCACATTCACTGGCCAATAGTCTCGGGGACACCAAGACTGTGACTCTATAACA- 656
consensus_5504#1      AATTTTGCACATTCACTGGCCAATGTCCTCGGGGAAACCAAGACTGTAAATCTATAACAC 656
                      * **********************   ******** *********** * ********* 

consensus_5504#0      AACACCATTCGAGGTAAACGCGGTGAC 683
consensus_5504#1      AACAAGATTCGAAGTAAACG------- 676
                      ****  ****** *******