cluster # 5506

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Oryza sativa
cluster # 5506 cluster # 5506 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5506#0 length = 274 sequences # 2

consensus_5506#1 length = 133 sequences # 1

consensusID : consensus_5506#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 274
fasta sequence

                              [NGNCGTAGCTGCCCGCCGGCGCCGCGAGGTTCGATCAGTACTCCTTCTTCCACAACAAGTGCCTCTGCGGACCGCCGCTCCCTACTCCCTGCAATTAAGCTCCCATTACTTAATTACTAGCTATGTGGTGAAATTATACATCAGCAATGCAAGCAAAATAAATAAATATATATATATATATATATATTTGTATAATGATTTTAATAAGTCAAAAACAGATTGATGCATTTGGAAGGAATGATTAATAAAGCTGTGTTCAATTGTTTCTGGGACA]

[+] EMBL AU066093             [NGNCGTAGCTGCCCGCCGGCGCCGCGAGGTTCGATCAGTACTCCTTCTTCCACAACAAGTGCCTCTGCGGACCGCCGCTCCCTACTCCCTGCAATTAAGCTCCCATTACTTAATTACTAGCTATGTGGTGAAATTATACATCAGCAATGCAAGCAAAATAAATAAATATATATATATATATATATATTTGTATAATGATTTTAATAAGTCAAAAACAGATTGATGCATTTGGAAGGAATGATTAATAAAGCTGTGTTCAATTGTTTCTGGGACA]
[+] EMBL AU223072             [          GCCCGCCGGCGCCGCGAGGTTCGATCAGTACTCCTTCTTCCACAACAAGTGCCTCTGCGGACCGCCGCTCCCTACTCCCTGCAATTAAGCTCCCATTACTTAATTACTAGCTATGTGGTGAAATTATACATCAGCAATGCAAGCAAAATAAATAAATATATATATATATATATATATTTGTATAATGATTTTAATAAGTCAAAAACAGATTGATGCATTTGGAAGGAATGATTAATAAAGCTGTGTTCAATTGTTTCTGGGACA]




>consensus_5506#0
NGNCGTAGCTGCCCGCCGGCGCCGCGAGGTTCGATCAGTACTCCTTCTTCCACAACAAGT
GCCTCTGCGGACCGCCGCTCCCTACTCCCTGCAATTAAGCTCCCATTACTTAATTACTAG
CTATGTGGTGAAATTATACATCAGCAATGCAAGCAAAATAAATAAATATATATATATATA
TATATATTTGTATAATGATTTTAATAAGTCAAAAACAGATTGATGCATTTGGAAGGAATG
ATTAATAAAGCTGTGTTCAATTGTTTCTGGGACA

consensusID : consensus_5506#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 133
fasta sequence

                              [ATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTGTATAATGATTTTAATAAGTCAAAAACAGATTGATGCATTTGGAAGGAATGATTAATAAAGCTGTGTTCAATTGT]

[-] EMBL D42972               [ATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTGTATAATGATTTTAATAAGTCAAAAACAGATTGATGCATTTGGAAGGAATGATTAATAAAGCTGTGTTCAATTGT]




>consensus_5506#1
ATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTGT
ATAATGATTTTAATAAGTCAAAAACAGATTGATGCATTTGGAAGGAATGATTAATAAAGC
TGTGTTCAATTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5506#0      NGNCGTAGCTGCCCGCCGGCGCCGCGAGGTTCGATCAGTACTCCTTCTTCCACAACAAGT 60
consensus_5506#1      ------------------------------------------------------------
                                                                                  

consensus_5506#0      GCCTCTGCGGACCGCCGCTCCCTACTCCCTGCAATTAAGCTCCCATTACTTAATTACTAG 120
consensus_5506#1      ------------------------------------------------------------
                                                                                  

consensus_5506#0      CTATGTGGTGAAATTATACATCAGCA-ATGCAAGCAAA-ATAAATAAATATATATATATA 178
consensus_5506#1      -------------ATATATATATATATATATATATATATATATATATATATATATATATA 47
                                    **** **    * **  *   * * *** *** *************

consensus_5506#0      TATATATATTTGTATAATGATTTTAATAAGTCAAAAACAGATTGATGCATTTGGAAGGAA 238
consensus_5506#1      TATATATATTTGTATAATGATTTTAATAAGTCAAAAACAGATTGATGCATTTGGAAGGAA 107
                      ************************************************************

consensus_5506#0      TGATTAATAAAGCTGTGTTCAATTGTTTCTGGGACA 274
consensus_5506#1      TGATTAATAAAGCTGTGTTCAATTGT---------- 133
                      **************************