cluster # 5507

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Oryza sativa
cluster # 5507 cluster # 5507 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5507#0 length = 529 sequences # 2

consensus_5507#1 length = 250 sequences # 1

consensusID : consensus_5507#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 529
fasta sequence

                              [CGCCGCCACCAGCATCCACTCCGCCGTCACCACCGTCCCCTTCCTCCTCCTCCCACCCGCCGCTGCGGGCGCCGCTGCTCATCACCATCTCCTTCACCTTCTCTTTCCCCACCCTCACGCCGCCGCCCACCACGCCGTCGTCCTCCTCCTCCTCGGTCGCGCTTCGATCCCCATCGCCATGGCCTTGGGTGGCGTGTCCATGGCCATCATCGCCATGGCCTTGGGCGGCGGCGGCGGCGGCGGAGGCGGGAGCGTGAAGGGGAGGGACATGGCGGGGAGCGGATGGGCGGCCGACGCCTGCTGCACGGCGGCGACCTCCTCGACGCGGCGCTCGAGGCGGCCAATGCGCGCATCGGCCTCGTCGCGGAGGCGGCGCACGCCGTCGAGCACGTGGTAGGGTCGTGGCGGGACAGCCACCGCGCGATGGCGGTGTCGGCGGCCTCCATACGGCGGGCCAGCTGGGCGGTGCGTTACATGTTCCACCGCCGGCGCCAACAGCCGAGCGGCTAGCAGATCAAGTGGCGATGGA]

[+] EMBL CB619276             [CGCCGCCACCAGCATCCACTCCGCCGTCACCACCGTCCCCTTCCTCCTCCTCCCACCCGCCGCTGCGGGCGCCGCTGCTCATCACCATCTCCTTCACCTTCTCTTTCCCCACCCTCACGCCGCCGCCCACCACGCCGTCGTCCTCCTCCTCCTCGGTCGCGCTTCGATCCCCATCGCCATGGCCTTGGGTGGCGTGTCCATGGCCATCATCGCCATGGCCTTGGGCGGCGGCGGCGGCGGCGGAGGCGGGAGCGTGAAGGGGAGGGACATGGCGGGGAGCGGATGGGCGGCCGACGCCTGCTGCACGGCGGCGACCTCCTCGACGCGGCGCTCGAGGCGGCCAATGCGCGCATCGGCCTCGTCGCGGAGGCGGCGCACGCCGTCGAGCACGTGGTAGGGTCGTGGCGGGACAGCCACCGCGCGATGGCGGTGTCGGCGGCCTCCATACGGCGGGCCAGCTGGGCGGTGCGTTACATGTTCCACCGCCGGCGCCAACAGCCGAGCGGCTAGCAGATCAAGTGGCGATGGA]
[+] EMBL CB636659             [          AGCATCCACTCCGCCGTCACCACCGTCCCCTTCCTCCTCCTCCCACCCGCCGCTGCGGGCGCCGCTGCTCATCACCATCTCCTTCACCTTCTCTTTCCCCACCCTCACGCCGCCGCCCACCACGCCGTCGTCCTCCTCCTCCTCGGTCGCGCTTCGATCCCCATCGCCATGGCCTTGGGTGGCGTGTCCATGGCCATCATCGCCATGGCCTTGGGCGGCGGCGGCGGCGGCGGAGGCGGGAGCGTGAAGGGGAGGGACATGGCGGGGAGCGGATGGGCGGCCGACGCCTGCTGCACGGCGGCGACCTCCTCGACGCGGCGCTCGAGGCGGCCAATGCGCGCATCGGCCTCGTCGCGGAGGCGGCGCACGCCGTCGAGCACGTGGTAGGGTCGTGGCGGGACAGCCACCGCGCGATGGCGGTGTCGGCGGCCTCCATACGGCGGGCCAGCTGGGCGGTGCGTTACATGTTCCACCGCCGGCGCCAACAGC                              ]




>consensus_5507#0
CGCCGCCACCAGCATCCACTCCGCCGTCACCACCGTCCCCTTCCTCCTCCTCCCACCCGC
CGCTGCGGGCGCCGCTGCTCATCACCATCTCCTTCACCTTCTCTTTCCCCACCCTCACGC
CGCCGCCCACCACGCCGTCGTCCTCCTCCTCCTCGGTCGCGCTTCGATCCCCATCGCCAT
GGCCTTGGGTGGCGTGTCCATGGCCATCATCGCCATGGCCTTGGGCGGCGGCGGCGGCGG
CGGAGGCGGGAGCGTGAAGGGGAGGGACATGGCGGGGAGCGGATGGGCGGCCGACGCCTG
CTGCACGGCGGCGACCTCCTCGACGCGGCGCTCGAGGCGGCCAATGCGCGCATCGGCCTC
GTCGCGGAGGCGGCGCACGCCGTCGAGCACGTGGTAGGGTCGTGGCGGGACAGCCACCGC
GCGATGGCGGTGTCGGCGGCCTCCATACGGCGGGCCAGCTGGGCGGTGCGTTACATGTTC
CACCGCCGGCGCCAACAGCCGAGCGGCTAGCAGATCAAGTGGCGATGGA

consensusID : consensus_5507#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 250
fasta sequence

                              [NAGANGACCCACCCAGGTGCTCAAGGAGCTNGAGGANGCNNNGAAGGCGTCGCNGCACATCNNCATCTCCTTCACCTTCTCTTTCCCCACCCTCACGCCGCCGCCCACCACGCCGTCGTCCTCCTCCTCCTCGGTCGCGCTTCGATCCCCATCGCCATGGCCTTGGGTGGCGTGTCCATGGCCATCATCNCCATGGCCTTGGGCGGNGGNGGAAGACGCCGANGCNGGATCCTTNANGGGAAGNACNTCN]

[+] EMBL AA754589             [NAGANGACCCACCCAGGTGCTCAAGGAGCTNGAGGANGCNNNGAAGGCGTCGCNGCACATCNNCATCTCCTTCACCTTCTCTTTCCCCACCCTCACGCCGCCGCCCACCACGCCGTCGTCCTCCTCCTCCTCGGTCGCGCTTCGATCCCCATCGCCATGGCCTTGGGTGGCGTGTCCATGGCCATCATCNCCATGGCCTTGGGCGGNGGNGGAAGACGCCGANGCNGGATCCTTNANGGGAAGNACNTCN]




>consensus_5507#1
NAGANGACCCACCCAGGTGCTCAAGGAGCTNGAGGANGCNNNGAAGGCGTCGCNGCACAT
CNNCATCTCCTTCACCTTCTCTTTCCCCACCCTCACGCCGCCGCCCACCACGCCGTCGTC
CTCCTCCTCCTCGGTCGCGCTTCGATCCCCATCGCCATGGCCTTGGGTGGCGTGTCCATG
GCCATCATCNCCATGGCCTTGGGCGGNGGNGGAAGACGCCGANGCNGGATCCTTNANGGG
AAGNACNTCN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5507#0      CGCCGCCACCAGCATCCACTCCGCCGTCACCACCGTCCCCTTCCTCCTCCTCCCACCCGC 60
consensus_5507#1      --------------------NAGANGAC-CCACCCAGGTGCTCAAGGAGCTNGAGGANGC 39
                                            *  * * *****       **      **       **

consensus_5507#0      CGCTGCGGGCGCCGCTGCTCATCACCATCTCCTTCACCTTCTCTTTCCCCACCCTCACGC 120
consensus_5507#1      NNN-GAAGGCGTCGCNGCACATCNNCATCTCCTTCACCTTCTCTTTCCCCACCCTCACGC 98
                          *  **** *** ** ****  ***********************************

consensus_5507#0      CGCCGCCCACCACGCCGTCGTCCTCCTCCTCCTCGGTCGCGCTTCGATCCCCATCGCCAT 180
consensus_5507#1      CGCCGCCCACCACGCCGTCGTCCTCCTCCTCCTCGGTCGCGCTTCGATCCCCATCGCCAT 158
                      ************************************************************

consensus_5507#0      GGCCTTGGGTGGCGTGTCCATGGCCATCATCGCCATGGCCTTGGGCGGCGGCGGCGGCGG 240
consensus_5507#1      GGCCTTGGGTGGCGTGTCCATGGCCATCATCNCCATGGCCTTGGGCGGNGGNGGAAGACG 218
                      ******************************* **************** ** **  *  *

consensus_5507#0      CGGAGGCGGGAGCGTGAAGGGGAGGGACATGGCGGGGAGCGGATGGGCGGCCGACGCCTG 300
consensus_5507#1      CCGANGCNGGATCCTTNANGGGAAGNACNTCN---------------------------- 250
                      * ** ** *** * *  * **** * ** *                              

consensus_5507#0      CTGCACGGCGGCGACCTCCTCGACGCGGCGCTCGAGGCGGCCAATGCGCGCATCGGCCTC 360
consensus_5507#1      ------------------------------------------------------------
                                                                                  

consensus_5507#0      GTCGCGGAGGCGGCGCACGCCGTCGAGCACGTGGTAGGGTCGTGGCGGGACAGCCACCGC 420
consensus_5507#1      ------------------------------------------------------------
                                                                                  

consensus_5507#0      GCGATGGCGGTGTCGGCGGCCTCCATACGGCGGGCCAGCTGGGCGGTGCGTTACATGTTC 480
consensus_5507#1      ------------------------------------------------------------
                                                                                  

consensus_5507#0      CACCGCCGGCGCCAACAGCCGAGCGGCTAGCAGATCAAGTGGCGATGGA 529
consensus_5507#1      -------------------------------------------------