These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5516#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence [GAACTAGTCTCGAGTTTTTTTTTTTTTGTGTTTTTTTTTTTTTGAACAATGAAATCCTTATTTATTTGGTTTCTTTTATGCATACAAGGAAAATGATGTTATAAAATATTTTGACTTTGGTCAAAGTCAAACTACATTTATATTCAAATCTATAACTAATATAAATATTCGGATTTTTTCGGTCGTAACATCCGTCCTTCATCGCGTTTTCATCCGTCATTACGGACTAATTTTTCCTCATCCGATTCATGGCGCACCTCCCCTCCAAATCCCACATCCAATCCAACCCAAAAACAAAATCTCAATCTCAATCCCAATCCAAATACAAATTGGAATCATTACAAAATCCTTAAAAAAACACTTTTTAAAAGAATCCCAGAACCTTTTTTTTTCAACACCAATGACATCACAGAAACTTCAAAGCCCCAAAATTGCCAACCCGGAAGGGAAGGTGCCCGTCTTCTTTGTTAAGGGAACCCCGGCCCACTTTTCCTTTCTTTCCTTTGGATTCGGGGGAGGGAAGGTGCCTTTCCTT] [+] EMBL AW155506 [GAACTAGTCTCGAGTTTTTTTTTTTTTGTGTTTTTTTTTTTTTGAACAATGAAATCCTTATTTATTTGGTTTCTTTTATGCATACAAGGAAAATGATGTTATAAAATATTTTGACTTTGGTCAAAGTCAAACTACATTTATATTCAAATCTATAACTAATATAAATATTCGGATTTTTTCGGTCGTAACATCCGTCCTTCATCGCGTTTTCATCCGTCATTACGGACTAATTTTTCCTCATCCGATTCATGGCGCACCTCCCCTCCAAATCCCACATCCAATCCAACCCAAAAACAAAATCTCAATCTCAATCCCAATCCAAATACAAATTGGAATCATTACAAAATCCTTAAAAAAACACTTTTTAAAAGAATCCCAGAACCTTTTTTTTTCAACACCAATGACATCACAGAAACTTCAAAGCCCCAAAATTGCCAACCCGGAAGGGAAGGTGCCCGTCTTCTTTGTTAAGGGAACCCCGGCCCACTTTTCCTTTCTTTCCTTTGGATTCGGGGGAGGGAAGGTGCCTTTCCTT] consensusID : consensus_5516#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 469 fasta sequence [TTTTTGAATGTCGTCCCGTCTGAAGTAACAAACGGAACAATGAAATTATTATTTATTT-GGTTTCTTTTATGCATACAAGGAAAATGATTACTACTACACCCTCCATTTTAGGTTAT-AAAATATTTTGACTTTGGTCAAAGTCAAACTACATTTATATTCAAATCTATAACTAATATAAATATTCGGATTTTTTCGGTCGTAACATCCGTCCTTCATCGCGTTTTCATCC-GTCATTACGGACTAATTTTTCCTCATCCGATTCA-TGGCGCACCTCCCC-TCCAAA-TCCCACATCCAATCCAACCCAAAA-ACAAAATCTCAATCTCAA-TCCCAA-TCCAAATACAAATTGGAAT-CATCACAAAATCCTAGAGAAAA-CACTACTAAA-AGATCACAAGAACATATTT-CAT-CAA-CAACAACGACAACACAAGAACATCAC-AAGCACAAA-A-A--TGCCGACACCGGAAGGGGACGGGTG] [-] EMBL BM419809 [TTTTTGAATGTCGTCCCGTCTGAAGTAACAAACGGAACAATGAAATTATTATTTATTT GGTTTCTTTTATGCATACAAGGAAAATGATTACTACTACACCCTCCATTTTAGGTTAT AAAATATTTTGACTTTGGTCAAAGTCAAACTACATTTATATTCAAATCTATAACTAATATAAATATTCGGATTTTTTCGGTCGTAACATCCGTCCTTCATCGCGTTTTCATCC GTCATTACGGACTAATTTTTCCTCATCCGATTCA TGGCGCACCTCCCC TCCAAA TCCCACATCCAATCCAACCCAAAA ACAAAATCTCAATCTCAA TCCCAA TCCAAATACAAATTGGAAT CATCACAAAATCCTAGAGAAAA CACTACTAAA AGATCACAAGAACATATTT CAT CAA CAACAACGACAACACAAGAACATCAC AAGCACAAA A A TGCCGACACCGGAAGGG ] [-] EMBL BM419059 [ TTTTGAATGTCGTCCCGTCTGAAGTAACAAACGGAACAATGAAATTATTATTTATTTGGGTTTCTTTTATGCATACAAGGAAAATGATTACTACTACACCCTCCATTTTAGGTTATCAAAATA TTTGACTTGGGTCAAAGTCAAACTACATTTATATTCAAATCTATAACTAATATAAATATTCGGA TTTTTCGGTCGTAACATCCGTCCTTCATCGCGTTTTCATCCGGTCATTACGGACTAATTTTTCCTCATCCGATTCAGTGGCGCACCTCCCCGTCCAAAGTCCCACATCCAATCCAACCCAAAAGACAAAATCTCAATCTCAAGTCCCAAGTCCAAATACAAATGGGAATCCATCACAAAATCCTAGAGAAAACCACTACTAAACAGATCACAAGAACATATTTCCATCCAACCAACAACGACAACACAAGAACATCACAAAGCACAAACACANGTGCCGACACCGGAACGGGACGGGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5516#0 GAACTAGTCTCGAGTTTTTTTTTTTTTGTGTTTTTTTTTTTTTGAACAATGAAATCCTTA 60 consensus_5516#1 ------TTTTTGAATGTCGTCCCGTCTGAAGTAACAAA---CGGAACAATGAAATTATTA 51 * * ** * * * * ** * ************ *** consensus_5516#0 TTTATTTGGTTTCTTTTATGCATACAAGGAAAATGAT----------------------- 97 consensus_5516#1 TTTATTTGGTTTCTTTTATGCATACAAGGAAAATGATTACTACTACACCCTCCATTTTAG 111 ************************************* consensus_5516#0 GTTATAAAATATTTTGACTTTGGTCAAAGTCAAACTACATTTATATTCAAATCTATAACT 157 consensus_5516#1 GTTATAAAATATTTTGACTTTGGTCAAAGTCAAACTACATTTATATTCAAATCTATAACT 171 ************************************************************ consensus_5516#0 AATATAAATATTCGGATTTTTTCGGTCGTAACATCCGTCCTTCATCGCGTTTTCATCCGT 217 consensus_5516#1 AATATAAATATTCGGATTTTTTCGGTCGTAACATCCGTCCTTCATCGCGTTTTCATCCGT 231 ************************************************************ consensus_5516#0 CATTACGGACTAATTTTTCCTCATCCGATTCATGGCGCACCTCCCCTCCAAATCCCACAT 277 consensus_5516#1 CATTACGGACTAATTTTTCCTCATCCGATTCATGGCGCACCTCCCCTCCAAATCCCACAT 291 ************************************************************ consensus_5516#0 CCAATCCAACCCAAAAACAAAATCTCAATCTCAATCCCAATCCAAATACAAATTGGAATC 337 consensus_5516#1 CCAATCCAACCCAAAAACAAAATCTCAATCTCAATCCCAATCCAAATACAAATTGGAATC 351 ************************************************************ consensus_5516#0 ATTACAAAATCCTTAAAAAAACACTTTTTAAAAGAATCCCAGAACCTTTTTTTTTCAACA 397 consensus_5516#1 ATCACAAAATCCTAGAGAAAACACTACT--AAAAGATCACAAGAACATATTTCATCAACA 409 ** ********** * ******** * *** *** ** * * * *** ****** consensus_5516#0 CCAATGACATCACAGAAACTTCAAAGCCCCAAAATTGCCAAC-CCGGAAGGGAAGGTGCC 456 consensus_5516#1 ACAACGACAACACAAGAACATCACAAGCACAAAAATGCCGACACCGGAAGGGGACGGGTG 469 *** **** **** *** *** * * ***** **** ** ********* * * * consensus_5516#0 CGTCTTCTTTGTTAAGGGAACCCCGGCCCACTTTTCCTTTCTTTCCTTTGGATTCGGGGG 516 consensus_5516#1 ------------------------------------------------------------ consensus_5516#0 AGGGAAGGTGCCTTTCCTT 535 consensus_5516#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||