cluster # 5525

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Oryza sativa
cluster # 5525 cluster # 5525 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5525#0 length = 1375 sequences # 2

consensus_5525#1 length = 389 sequences # 1

consensusID : consensus_5525#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1375
fasta sequence

                              [TTCGTCGTCGTCGTCGTCGGCGGCGGCGGCATGGCGGACGACGGAGACGGCGACTGCGTGAACCTGGAGCCTTTCTTCTACGACGAGGCAGCGACCGTGGCCGAGGCGGCGGCGGCGGCGGAGAGGCGGGAGCGGGAGGAGCAGGAGAAGGCGCGGGAGGCGGCGGCGAACGCCAGGAGATGGGCGGCGCACAACGCCGCCCTCGCCGGCATCCGCGAGTACGACCCCGCCGAGGAGACGTACATCTACACCCGCTACCACTACGCGGACCTGTCCGAGTTCGACCTCGACGAGGAGTCCCGCCTCCCTCCCATGCGCCACACCGCCGCCACCTACGCCCCGCCGGCGCGAGCCCTCCACTTCCTCTGCGATATGATCAACGTCCTCGCCGTCCGCATCATCCTCCCCTCCTCCGATCGCTCTGATGGTGGTGGTGTCGGCTTCCCCATCAGCGTCTACAGTTCTGTCATCGCCAGAGACCAGCTTGATTACAAATGTGTACATCTCTTCCGCCGCTGCAGAGACGATCCTCAGCTAATCACCTCAGAGGATGAACTGTCGTTGATATTGACTGGGCCTCATCGAGGACTTGTGCTGTATGACGCTCTGTACATTGAGGTCGATCTCAAGATGAAGGTGAAGGGTGATCAACAACAAGGCTGCAAGGACAAGCGACTCAGTAAAGGGCTGATAGTGTTGGATGGCGTACTGCTCTCAACAAACTTGAGCGACCATTTGCGTGCTGCGGTTAAAACCGCCACTCTTGATAGGAGAAGCACCATGCCCTGTGCCGTGCAGGTCACTTACGCGTATGTCACGCGTGCAGTGGAGGCCACCGTCTCCGTTGAGCTTCTGCATGATCAGGGAGGATGAGCTCATTTCTGTGGGGAGATCACTGCTTGCACCAGCACTATCCGAGATAGCATTGTGCTCCATGATAGCAGATTACTAGCAGATGATGGCATTGTGGCTGATGGATCTACTGTCCGGCTATTGCGCCGCGTGATTGGCGTCTGTTTGGATGAGGTGCTGATAGTGACAATTGTTGCTCAAGATGGTGACCTTGCAAAGGCAACTAACTACTGCAGACAAACCGTTGATTTTACACCTTGTGTCAATGGTGGAGACGAAGCTCGAGTTGTGGGTGGTGTCGGCAGTTTT-CTTGTGAAGGTTATTTGGTCGTTAATGGACCCAGTTATTGACAAGTAGTTTGTTATCTTTATCATCACGAATGTAGGCTTTTAGTTGTGTACTGATTGTCTGCAATAGTTATGTACTGTTGAGAGGAANAAGAAAACGTTTGCTCCCTGGAATTAGGCACTAGCAATAGCATGCCNCGGCTGAGGAAACCGTGCCGGCCAAAGATGTGTAAAAA]

[+] EMBL AK064094             [TTCGTCGTCGTCGTCGTCGGCGGCGGCGGCATGGCGGACGACGGAGACGGCGACTGCGTGAACCTGGAGCCTTTCTTCTACGACGAGGCAGCGACCGTGGCCGAGGCGGCGGCGGCGGCGGAGAGGCGGGAGCGGGAGGAGCAGGAGAAGGCGCGGGAGGCGGCGGCGAACGCCAGGAGATGGGCGGCGCACAACGCCGCCCTCGCCGGCATCCGCGAGTACGACCCCGCCGAGGAGACGTACATCTACACCCGCTACCACTACGCGGACCTGTCCGAGTTCGACCTCGACGAGGAGTCCCGCCTCCCTCCCATGCGCCACACCGCCGCCACCTACGCCCCGCCGGCGCGAGCCCTCCACTTCCTCTGCGATATGATCAACGTCCTCGCCGTCCGCATCATCCTCCCCTCCTCCGATCGCTCTGATGGTGGTGGTGTCGGCTTCCCCATCAGCGTCTACAGTTCTGTCATCGCCAGAGACCAGCTTGATTACAAATGTGTACATCTCTTCCGCCGCTGCAGAGACGATCCTCAGCTAATCACCTCAGAGGATGAACTGTCGTTGATATTGACTGGGCCTCATCGAGGACTTGTGCTGTATGACGCTCTGTACATTGAGGTCGATCTCAAGATGAAGGTGAAGGGTGATCAACAACAAGGCTGCAAGGACAAGCGACTCAGTAAAGGGCTGATAGTGTTGGATGGCGTACTGCTCTCAACAAACTTGAGCGACCATTTGCGTGCTGCGGTTAAAACCGCCACTCTTGATAGGAGAAGCACCATGCCCTGTGCCGTGCAGGTCACTTACGCGTATGTCACGCGTGCAGTGGAGGCCACCGTCTCCGTTGAGCTTCTGCATGATCAGGGAGGATGAGCTCATTTCTGTGGGGAGATCACTGCTTGCACCAGCACTATCCGAGATAGCATTGTGCTCCATGATAGCAGATTACTAGCAGATGATGGCATTGTGGCTGATGGATCTACTGTCCGGCTATTGCGCCGCGTGATTGGCGTCTGTTTGGATGAGGTGCTGATAGTGACAATTGTTGCTCAAGATGGTGACCTTGCAAAGGCAACTAACTACTGCAGACAAACCGTTGATTTTACACCTTGTGTCAATGGTGGAGACGAAGCTCGAGTTGTGGGTGGTGTCGGCAGTTTT CTTGTGAAGGTTATTTGGTCGTTAATGGACCCAGTTATTGACAAGTAGTTTGTTATCTTTATCATCACGAATGTAGGCTTTTAGTTGTGTACTGATTGTCTGCAATAGTTATGTACTGTTGA                                                                                            ]
[+] EMBL AU067977             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGCTATTGCGCCNCGTGATTGGCGTCTGTTTGGATGAGGTGCTGATAGTGACAATTGTTGCTCAAGATGGTGNCCTTGCAAAGGCAACTAACTA TGCAGACAAACCGTTGATTTTACACCTNGTGTCAATGGTGGAGACGAAGCTCGAGTTGTGGGTGGTGTCGGCAGTTTTCCTTGTGAAGGTTATTTGGTCGTTAATGGNCCCAGTTATTGACNAGTAGTTTGTTNTCTTTATCATCACGAATNTAGGCTTNTAGTTGTGTACTGATTGTCTGCAATAGTTATGTACTGTTGAGAGGAANAAGAAAACGTTTGCTCCCTGGAATTAGGCACTAGCAATAGCATGCCNCGGCTGAGGAAACCGTGCCGGCCAAAGATGTGTAAAAA]




>consensus_5525#0
TTCGTCGTCGTCGTCGTCGGCGGCGGCGGCATGGCGGACGACGGAGACGGCGACTGCGTG
AACCTGGAGCCTTTCTTCTACGACGAGGCAGCGACCGTGGCCGAGGCGGCGGCGGCGGCG
GAGAGGCGGGAGCGGGAGGAGCAGGAGAAGGCGCGGGAGGCGGCGGCGAACGCCAGGAGA
TGGGCGGCGCACAACGCCGCCCTCGCCGGCATCCGCGAGTACGACCCCGCCGAGGAGACG
TACATCTACACCCGCTACCACTACGCGGACCTGTCCGAGTTCGACCTCGACGAGGAGTCC
CGCCTCCCTCCCATGCGCCACACCGCCGCCACCTACGCCCCGCCGGCGCGAGCCCTCCAC
TTCCTCTGCGATATGATCAACGTCCTCGCCGTCCGCATCATCCTCCCCTCCTCCGATCGC
TCTGATGGTGGTGGTGTCGGCTTCCCCATCAGCGTCTACAGTTCTGTCATCGCCAGAGAC
CAGCTTGATTACAAATGTGTACATCTCTTCCGCCGCTGCAGAGACGATCCTCAGCTAATC
ACCTCAGAGGATGAACTGTCGTTGATATTGACTGGGCCTCATCGAGGACTTGTGCTGTAT
GACGCTCTGTACATTGAGGTCGATCTCAAGATGAAGGTGAAGGGTGATCAACAACAAGGC
TGCAAGGACAAGCGACTCAGTAAAGGGCTGATAGTGTTGGATGGCGTACTGCTCTCAACA
AACTTGAGCGACCATTTGCGTGCTGCGGTTAAAACCGCCACTCTTGATAGGAGAAGCACC
ATGCCCTGTGCCGTGCAGGTCACTTACGCGTATGTCACGCGTGCAGTGGAGGCCACCGTC
TCCGTTGAGCTTCTGCATGATCAGGGAGGATGAGCTCATTTCTGTGGGGAGATCACTGCT
TGCACCAGCACTATCCGAGATAGCATTGTGCTCCATGATAGCAGATTACTAGCAGATGAT
GGCATTGTGGCTGATGGATCTACTGTCCGGCTATTGCGCCGCGTGATTGGCGTCTGTTTG
GATGAGGTGCTGATAGTGACAATTGTTGCTCAAGATGGTGACCTTGCAAAGGCAACTAAC
TACTGCAGACAAACCGTTGATTTTACACCTTGTGTCAATGGTGGAGACGAAGCTCGAGTT
GTGGGTGGTGTCGGCAGTTTTCTTGTGAAGGTTATTTGGTCGTTAATGGACCCAGTTATT
GACAAGTAGTTTGTTATCTTTATCATCACGAATGTAGGCTTTTAGTTGTGTACTGATTGT
CTGCAATAGTTATGTACTGTTGAGAGGAANAAGAAAACGTTTGCTCCCTGGAATTAGGCA
CTAGCAATAGCATGCCNCGGCTGAGGAAACCGTGCCGGCCAAAGATGTGTAAAAA

consensusID : consensus_5525#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 389
fasta sequence

                              [GCGGGAGACGGCGACTGCGTGAACCTGGAGCCTTTCTTCTACGACGAGGCAGCGACCGTGGCCGAGGCGGCGGCGGCGGCGGAGAGGCGCGAGTACGACCCCGCCGAGGAGACGTACATCTACACCCGCTACCACTACGCGGACCTGTCCGAGTTCGACCTCGACGAGGAGTCCCGCCTCCCTCCCATGCGCCACACCGCCGCCACCTACGCCCCGCCGGCGCGANCCTCCACTTCCTCTGCGATATGATCAACGTCCTCGCCGTCCGCATCATCCTCCCCTCCTCCGATCGCTCTGATGGTGGTGGTGTCGGCTTCCCCATCAGCGTCTACGGTTCTGTCATCGCCAGAGACCAGCTTGATTACAAATGTGTACATCTCTTCCGCCGC]

[+] EMBL AU067976             [GCGGGAGACGGCGACTGCGTGAACCTGGAGCCTTTCTTCTACGACGAGGCAGCGACCGTGGCCGAGGCGGCGGCGGCGGCGGAGAGGCGCGAGTACGACCCCGCCGAGGAGACGTACATCTACACCCGCTACCACTACGCGGACCTGTCCGAGTTCGACCTCGACGAGGAGTCCCGCCTCCCTCCCATGCGCCACACCGCCGCCACCTACGCCCCGCCGGCGCGANCCTCCACTTCCTCTGCGATATGATCAACGTCCTCGCCGTCCGCATCATCCTCCCCTCCTCCGATCGCTCTGATGGTGGTGGTGTCGGCTTCCCCATCAGCGTCTACGGTTCTGTCATCGCCAGAGACCAGCTTGATTACAAATGTGTACATCTCTTCCGCCGC]




>consensus_5525#1
GCGGGAGACGGCGACTGCGTGAACCTGGAGCCTTTCTTCTACGACGAGGCAGCGACCGTG
GCCGAGGCGGCGGCGGCGGCGGAGAGGCGCGAGTACGACCCCGCCGAGGAGACGTACATC
TACACCCGCTACCACTACGCGGACCTGTCCGAGTTCGACCTCGACGAGGAGTCCCGCCTC
CCTCCCATGCGCCACACCGCCGCCACCTACGCCCCGCCGGCGCGANCCTCCACTTCCTCT
GCGATATGATCAACGTCCTCGCCGTCCGCATCATCCTCCCCTCCTCCGATCGCTCTGATG
GTGGTGGTGTCGGCTTCCCCATCAGCGTCTACGGTTCTGTCATCGCCAGAGACCAGCTTG
ATTACAAATGTGTACATCTCTTCCGCCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5525#0      TTCGTCGTCGTCGTCGTCGGCGGCGGCGGCATGGCGGACGACGGAGACGGCGACTGCGTG 60
consensus_5525#1      ---------------------------------------GCGGGAGACGGCGACTGCGTG 21
                                                             *  ******************

consensus_5525#0      AACCTGGAGCCTTTCTTCTACGACGAGGCAGCGACCGTGGCCGAGGCGGCGGCGGCGGCG 120
consensus_5525#1      AACCTGGAGCCTTTCTTCTACGACGAGGCAGCGACCGTGGCCGAGGCGGCGGCGGCGGCG 81
                      ************************************************************

consensus_5525#0      GAGAGGCGGGAGCGGGAGGAGCAGGAGAAGGCGCGGGAGGCGGCGGCGAACGCCAGGAGA 180
consensus_5525#1      GAGAGGCG---------------------------------------------------- 89
                      ********                                                    

consensus_5525#0      TGGGCGGCGCACAACGCCGCCCTCGCCGGCATCCGCGAGTACGACCCCGCCGAGGAGACG 240
consensus_5525#1      -----------------------------------CGAGTACGACCCCGCCGAGGAGACG 114
                                                         *************************

consensus_5525#0      TACATCTACACCCGCTACCACTACGCGGACCTGTCCGAGTTCGACCTCGACGAGGAGTCC 300
consensus_5525#1      TACATCTACACCCGCTACCACTACGCGGACCTGTCCGAGTTCGACCTCGACGAGGAGTCC 174
                      ************************************************************

consensus_5525#0      CGCCTCCCTCCCATGCGCCACACCGCCGCCACCTACGCCCCGCCGGCGCGAGCCCTCCAC 360
consensus_5525#1      CGCCTCCCTCCCATGCGCCACACCGCCGCCACCTACGCCCCGCCGGCGCGANCC-TCCAC 233
                      *************************************************** ** *****

consensus_5525#0      TTCCTCTGCGATATGATCAACGTCCTCGCCGTCCGCATCATCCTCCCCTCCTCCGATCGC 420
consensus_5525#1      TTCCTCTGCGATATGATCAACGTCCTCGCCGTCCGCATCATCCTCCCCTCCTCCGATCGC 293
                      ************************************************************

consensus_5525#0      TCTGATGGTGGTGGTGTCGGCTTCCCCATCAGCGTCTACAGTTCTGTCATCGCCAGAGAC 480
consensus_5525#1      TCTGATGGTGGTGGTGTCGGCTTCCCCATCAGCGTCTACGGTTCTGTCATCGCCAGAGAC 353
                      *************************************** ********************

consensus_5525#0      CAGCTTGATTACAAATGTGTACATCTCTTCCGCCGCTGCAGAGACGATCCTCAGCTAATC 540
consensus_5525#1      CAGCTTGATTACAAATGTGTACATCTCTTCCGCCGC------------------------ 389
                      ************************************                        

consensus_5525#0      ACCTCAGAGGATGAACTGTCGTTGATATTGACTGGGCCTCATCGAGGACTTGTGCTGTAT 600
consensus_5525#1      ------------------------------------------------------------
                                                                                  

consensus_5525#0      GACGCTCTGTACATTGAGGTCGATCTCAAGATGAAGGTGAAGGGTGATCAACAACAAGGC 660
consensus_5525#1      ------------------------------------------------------------
                                                                                  

consensus_5525#0      TGCAAGGACAAGCGACTCAGTAAAGGGCTGATAGTGTTGGATGGCGTACTGCTCTCAACA 720
consensus_5525#1      ------------------------------------------------------------
                                                                                  

consensus_5525#0      AACTTGAGCGACCATTTGCGTGCTGCGGTTAAAACCGCCACTCTTGATAGGAGAAGCACC 780
consensus_5525#1      ------------------------------------------------------------
                                                                                  

consensus_5525#0      ATGCCCTGTGCCGTGCAGGTCACTTACGCGTATGTCACGCGTGCAGTGGAGGCCACCGTC 840
consensus_5525#1      ------------------------------------------------------------
                                                                                  

consensus_5525#0      TCCGTTGAGCTTCTGCATGATCAGGGAGGATGAGCTCATTTCTGTGGGGAGATCACTGCT 900
consensus_5525#1      ------------------------------------------------------------
                                                                                  

consensus_5525#0      TGCACCAGCACTATCCGAGATAGCATTGTGCTCCATGATAGCAGATTACTAGCAGATGAT 960
consensus_5525#1      ------------------------------------------------------------
                                                                                  

consensus_5525#0      GGCATTGTGGCTGATGGATCTACTGTCCGGCTATTGCGCCGCGTGATTGGCGTCTGTTTG 1020
consensus_5525#1      ------------------------------------------------------------
                                                                                  

consensus_5525#0      GATGAGGTGCTGATAGTGACAATTGTTGCTCAAGATGGTGACCTTGCAAAGGCAACTAAC 1080
consensus_5525#1      ------------------------------------------------------------
                                                                                  

consensus_5525#0      TACTGCAGACAAACCGTTGATTTTACACCTTGTGTCAATGGTGGAGACGAAGCTCGAGTT 1140
consensus_5525#1      ------------------------------------------------------------
                                                                                  

consensus_5525#0      GTGGGTGGTGTCGGCAGTTTTCTTGTGAAGGTTATTTGGTCGTTAATGGACCCAGTTATT 1200
consensus_5525#1      ------------------------------------------------------------
                                                                                  

consensus_5525#0      GACAAGTAGTTTGTTATCTTTATCATCACGAATGTAGGCTTTTAGTTGTGTACTGATTGT 1260
consensus_5525#1      ------------------------------------------------------------
                                                                                  

consensus_5525#0      CTGCAATAGTTATGTACTGTTGAGAGGAANAAGAAAACGTTTGCTCCCTGGAATTAGGCA 1320
consensus_5525#1      ------------------------------------------------------------
                                                                                  

consensus_5525#0      CTAGCAATAGCATGCCNCGGCTGAGGAAACCGTGCCGGCCAAAGATGTGTAAAAA 1375
consensus_5525#1      -------------------------------------------------------