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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5526#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1803 fasta sequence
[TTTGTTGAGGAGTGCCTTTTAAATGATTATTCTTTTATGCTACTTTGTACTTAGGTGAATGATACAGTGGGGACATTAGCTCTAGGGCATTACTATGATGAAGACACAGTGGCTGCTGTGATAATTGGGTCTGGCACCAACGCTTGCTACATTGAACGCACTGATGCAATTATCAAGTGCCAGGGTCTTCTAACGAACTCTGGAGGCATGGTATCTTATTTTCTCCTTTATCTGTAGTCAGTTCAATTTCCTTGTCAAATGCTCATCAGCTTATGTGGAGTAAAGGAATTATGATGCCCATGTGCGTACCCTAAAACATTTCGTTAATCAGGTAGTAAACATGGAGTGGGGGAATTTCTGGTCATCACATTTGCCAAGGACGCCATATGACATCTTGCTGGATGATGAAACACACAATCGCAATGATCAGGTAGCAACCTGGGTAAAATTCAATTATTCTGGTATCTTGTGTTGTGGTTTAGACTGAACACTTTGTACTACCATGATTCAGGGCTTTGAGAAAATGATATCAGGAATGTATCTTGGGGAAATTGCAAGATTGGTATTTCATAGAATGGCCCAGGAATCAGATGTTTTTGGTGATGCTGCTGATAGTCTATCCAACCCTTTCATTTTGAGGTATGTCCGGATGTCAAATTCTACTGATGTTTGTTTCGTACCTGGTGTATTTCTGCATAAACACAATTAGTAAAAAGAAGTTGTTCTATGTGTTGTCTGATTTCAATTTTGCAAATCCAGCACACCGTTTCTGGCCGCAATTCGCGAGGACGATTCACCAGATCTGAGCGAAGTCAGAAGGATACTTCGAGAACATCTGAAGGTTAGCTCAGAATTATTCCAGCCATTTCATCGGGCACCATTCTTTTTTCCATTCCATCCATCTAGTTGTCTGATGATTCTCTCTTCCAGATTCCCGATGCTCCTCTGAAAACTCGACGGCTGGTCGTGAAAGTCTGCGACATTGTGACTCGCAGAGCCGCCCGTCTAGCCGCTGCAGGCATCGTGGGGATACTGAAGAAGCTGGGGAGGGATGGGAGCGGCGCGGCGTCGAGCGGGAGAGGTAGAGGGCAGCCGAGGAGGACGGTGGTGGCGATCGAGGGCGGGCTGTACCAGGGTTACCCGGTGTTCAGGGAGTACCTGGACGAGGCCCTGGTGGAGATCCTGGGGGAGGAGGTGGCGCGGAACGTGACGCTGAGGGTGACGGAGGATGGGTCGGGGGTCGGGGCTGCCCTCCTCGCCGCCGTACATCCGTCGAATAGACAGCAACAAGGAGGTCCCATATAGTGAGAGAGACAATGAAGATACAGCTAGCCCCTCTTGTTCAAATGTAAAAAAGGGACATTGTTTGATATCTATATTCATATATATAAAAATCTGGGTCTTGTGCAGAGAAATCCCGTTTTTTCTTGGCCTGCCATTCATGCTATGATAGTCTTACAGTATTTGCCATCTCTTGATTTCTGAATTCTCACAGGCGAGGTGAATAAGGCGAAGTGAATGGAATGAGAGTATGAGACGAGTTACGTTCAGTAGCTTGGTTTTCTACTACAAGTGGGGAGCATGTAGTATATGTTTTCGCATGCGCTTTTCCATTGGCAACGCACTGGATTCATGTAGCCTTGTTCTTTATTATGGCATATGGCATGCAACGTAGCTAGCTTGCATGACAGCATGAGTGCAAAACGACGTGCAATGGAGTGTAATACTAATAAAACTTATATAAAAAAAAGTGCACTCCACCTTTCAGGGATTAAAAATAAAAAATAAAAATAAAACGGAGCC]
[+] EMBL AK064590 [TTTGTTGAGGAGTGCCTTTTAAATGATTATTCTTTTATGCTACTTTGTACTTAGGTGAATGATACAGTGGGGACATTAGCTCTAGGGCATTACTATGATGAAGACACAGTGGCTGCTGTGATAATTGGGTCTGGCACCAACGCTTGCTACATTGAACGCACTGATGCAATTATCAAGTGCCAGGGTCTTCTAACGAACTCTGGAGGCATGGTATCTTATTTTCTCCTTTATCTGTAGTCAGTTCAATTTCCTTGTCAAATGCTCATCAGCTTATGTGGAGTAAAGGAATTATGATGCCCATGTGCGTACCCTAAAACATTTCGTTAATCAGGTAGTAAACATGGAGTGGGGGAATTTCTGGTCATCACATTTGCCAAGGACGCCATATGACATCTTGCTGGATGATGAAACACACAATCGCAATGATCAGGTAGCAACCTGGGTAAAATTCAATTATTCTGGTATCTTGTGTTGTGGTTTAGACTGAACACTTTGTACTACCATGATTCAGGGCTTTGAGAAAATGATATCAGGAATGTATCTTGGGGAAATTGCAAGATTGGTATTTCATAGAATGGCCCAGGAATCAGATGTTTTTGGTGATGCTGCTGATAGTCTATCCAACCCTTTCATTTTGAGGTATGTCCGGATGTCAAATTCTACTGATGTTTGTTTCGTACCTGGTGTATTTCTGCATAAACACAATTAGTAAAAAGAAGTTGTTCTATGTGTTGTCTGATTTCAATTTTGCAAATCCAGCACACCGTTTCTGGCCGCAATTCGCGAGGACGATTCACCAGATCTGAGCGAAGTCAGAAGGATACTTCGAGAACATCTGAAGGTTAGCTCAGAATTATTCCAGCCATTTCATCGGGCACCATTCTTTTTTCCATTCCATCCATCTAGTTGTCTGATGATTCTCTCTTCCAGATTCCCGATGCTCCTCTGAAAACTCGACGGCTGGTCGTGAAAGTCTGCGACATTGTGACTCGCAGAGCCGCCCGTCTAGCCGCTGCAGGCATCGTGGGGATACTGAAGAAGCTGGGGAGGGATGGGAGCGGCGCGGCGTCGAGCGGGAGAGGTAGAGGGCAGCCGAGGAGGACGGTGGTGGCGATCGAGGGCGGGCTGTACCAGGGTTACCCGGTGTTCAGGGAGTACCTGGACGAGGCCCTGGTGGAGATCCTGGGGGAGGAGGTGGCGCGGAACGTGACGCTGAGGGTGACGGAGGATGGGTCGGGGGTCGGGGCTGCCCTCCTCGCCGCCGTACATCCGTCGAATAGACAGCAACAAGGAGGTCCCATATAGTGAGAGAGACAATGAAGATACAGCTAGCCCCTCTTGTTCAAATGTAAAAAAGGGACATTGTTTGATATCTATATTCATATATATAAAAATCTGGGTCTTGTGCAGAGAAATCCCGTTTTTTCTTGGCCTGCCATTCATGCTATGATAGTCTTACAGTATTTGCCATCTCTTGATTTCTGAATTCTCACAGGCGAGGTGAATAAGGCGAAGTGAATGGAATGAGAGTATGAGACGAGTTACGTTCAGTAGCTTGGTTTTCTACTACAAGTGGGGAGCATGTAGTATATGTTTTCGCATGCGCTTTTCCATTGGCAACGCACTGGATTCATGTAGCCTTGTTCTTTATTATGGCATATGGCATGCAACGTAGCTAGCTTGCATGACAGCATGAGTGCAAAACGACGTGCAATGGAGTGTAATACTAATAAAACTTATATAAAAAAAAGTGCACTCCACCTTTCAGGGATTAAAAATAAAAAATAAAAATAAAACGGAGCC]
consensusID : consensus_5526#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1256 fasta sequence
[TTCNGACGANGTTGGTGCGGNATCTGTGATCGTCAACCAAAAGGTTGAACAGCACCCATCCCTGAGGAACTGACCAAAGGCACTACTGAGGGTTTATTCAACTTTGTTGCCTGGCACTAAAGAATTTTCTTGAAGGAGAAGATGACCAAGATGGAAAAATGGCACTTGGTTTTACNTTTTCTTTCCCTGTTANACAAATTTCAGTGTCTTCAGGGTCATTAATTAGGTGGACAAAAGGATTTTCCATCAGANACACGGTTGGCAGAAATGTTGCTCANTGCTTAAATGAAGCGCTTGCCAATTGTGGGCTAAATGTGCGGGTCACTGCATTGGTGAATGATACAGTGGGGACATTAGCTCTAGGGCATTACTATGATGAAAACACAGTGGCTGCTGTGATAATTGGGTCTGGCACCAACGCTTGCTACATTGAACGCACTGATGCAATTATCAAGTGCCANGGTCTTCTAACGAACTCTGGAAGCATGGTAATAAACATGGA-TGGGGGAA-TTCTGGTCNTCCACATTTGCCAAGGAC-CCATATGAC-TC-TGCTGGATGATG-AAC-CACAATCCCCATGATCNGGGC-TTGAAAAAAT-AAATCAGGAATGT-TC-TGGGGGAATTGC-ANA-TGGT-TTTTNTANAATGGCCCAGGAATCAGATGTTTTTGGTGATGCTGCTGATAGTCTATCCAACCCTTTCATTTTGAGCACACCGTTTCTGGCCGCAATTCGCGAGGACGATTCACCAGATCTGAGCGAAGTCAGAGGGATACTTCGAGAACATCTGAAGATTCCCGATGCTCCTCTGAAAACTCGACGGCTGGTCGTGAAAGTCTGCGACATTGTGACTCGCAGAGCCGCCCGTCTAGCCGCTGCAGGCATCGTGGGGATACTGAAGAAGCTGGGGAGGGATGGGAGCGGCGCGGCGTCGAGCGGGAGAGGTAGAGGGCAGCCGAGGAGGACGGTGGTGGCGATCGAGGGCGGGCTGTACCAGGGTTACCCGGTGTTCAGGGAGTACCTGGACGAGGCCCTGGTGGAGATCCTGGGGGAGGAGGTGGCGCGGAACGTGACGCTGAGGGTGACGGAGGATGGGTCGGGGGTCGGGGCTGCCCTCCTCGCCGCCGTACATTCGTCGAATAGACAGCAACAAGGGGGTCCCATATAGTGAGAGAGACAATGAAGATACAGCTAGCCCCTCTTGTTCAAATGTAAAAAAGGGACATTGTTTGATATCTATATTCATATATATAAAAATCTGGGTC]
[+] EMBL AA751584 [TTCNGACGANGTTGGTGCGGNATCTGTGATCGTCAACCAAAAGGTTGAACAGCACCCATCCCTGAGGAACTGACCAAAGGCACTACTGAGGGTTTATTCAACTTTGTTGCCTGGCACTAAAGAATTTTCTTGAAGGAGAAGATGACCAAGATGGAAAAATGGCACTTGGTTTTACNTTTTCTTTCCCTGTTANACAAATTTCAGTGTCTTCAGGGTCATTAATTAGGTGGACAAAAGGATTTTCCATCAGANACACGGTTGGCAGAAATGTTGCTCANTGCTTAAATGAAGCGCTTGCCAATTGTGGGCTAAATGTGCGGGTCACTGCATTGGTGAATGATACAGTGGGGACATTAGCTCTAGGGCATTACTATGATGAAAACACAGTGGCTGCTGTGATAATTGGGTCTGGCACCAACGCTTGCTACATTGAACGCACTGATGCAATTATCAAGTGCCANGGTCTTCTAACGAACTCTGGAAGCATGGTAATAAACATGGA TGGGGGAA TTCTGGTCNTCCACATTTGCCAAGGAC CCATATGAC TC TGCTGGATGATG AAC CACAATCCCCATGATCNGGGC TTGAAAAAAT AAATCAGGAATGT TC TGGGGGAATTGC ANA TGGT TTTTNTANAATGG ]
[+] EMBL AK107602 [ gcCCTGGCACTAAAGAATTTTCTTGAAGGAGAAGATGACCAAGATGGAAAAATGGCACTTGG TTTACATTTTCTTTCCCTGTTAGACAAATTTCAGTGTCTTCAGGGTCATTAATTAGGTGGACAAAAGGATTTTCCATCAGAGACACGGTTGGCAGAGATGTTGCTCAGTGCTTAAATGAAGCGCTTGCCAATTGTGGGCTAAATGTGCGGGTCACTGCATTGGTGAATGATACAGTGGGGACATTAGCTCTAGGGCATTACTATGATGAAGACACAGTGGCTGCTGTGATAATTGGGTCTGGCACCAACGCTTGCTACATTGAACGCACTGATGCAATTATCAAGTGCCAGGGTCTTCTAACGAACTCTGGAGGCATGGTAGTAAACATGGAGTGGGGGAATTTCTGGTCAT CACATTTGCCAAGGACGCCATATGACATCTTGCTGGATGATGAAACACACAATCGCAATGATCAGGGCTTTGAGAAAATGATATCAGGAATGTATCTTGGGGAAATTGCAAGATTGGTATTTCATAGAATGGCCCAGGAATCAGATGTTTTTGGTGATGCTGCTGATAGTCTATCCAACCCTTTCATTTTGAGCACACCGTTTCTGGCCGCAATTCGCGAGGACGATTCACCAGATCTGAGCGAAGTCAGAGGGATACTTCGAGAACATCTGAAGATTCCCGATGCTCCTCTGAAAACTCGACGGCTGGTCGTGAAAGTCTGCGACATTGTGACTCGCAGAGCCGCCCGTCTAGCCGCTGCAGGCATCGTGGGGATACTGAAGAAGCTGGGGAGGGATGGGAGCGGCGCGGCGTCGAGCGGGAGAGGTAGAGGGCAGCCGAGGAGGACGGTGGTGGCGATCGAGGGCGGGCTGTACCAGGGTTACCCGGTGTTCAGGGAGTACCTGGACGAGGCCCTGGTGGAGATCCTGGGGGAGGAGGTGGCGCGGAACGTGACGCTGAGGGTGACGGAGGATGGGTCGGGGGTCGGGGCTGCCCTCCTCGCCGCCGTACATTCGTCGAATAGACAGCAACAAGGGGGTCCCATATAGTGAGAGAGACAATGAAGATACAGCTAGCCCCTCTTGTTCAAATGTAAAAAAGGGACATTGTTTGATATCTATATTCATATATATAAAAATCTGGGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5526#0 TTTGTTGAGGAGTGCCTTTTAAATGATTATTCTTTTATGCTACTTTGTACTTAGGTGAAT 60
consensus_5526#1 -----------------TTCNGACGAN-GTTGGTGCGGNATCTGTGATCGTCAACCAAAA 42
** * ** ** * * * * * * **
consensus_5526#0 GATACAGTGGGGACATTAGCTCTAGGGCATTACTATGATGAAGACACAGTGGCTGCTGTG 120
consensus_5526#1 GGTTGAACAGCACC--CATCCCTGAGGAACTGACCAAAGGCACTACTGAGGGTTTATTCA 100
* * * * * * * ** ** * * * * * ** * *
consensus_5526#0 ATAATTGGGTCTGGCACCAACGCTTGCTACATTGAACGCACTGATG-CAATTATCAAGTG 179
consensus_5526#1 ACTTTGTTGCCTGGCACTAAAGAAT--TTTCTTGAAGGAGAAGATGACCAAGATGGAAAA 158
* * * ******* ** * * * ***** * **** * * ** *
consensus_5526#0 CCAGGGTCTTCTAACGAACTCTGGAGGCATGGTATCTTATTTTCTCCTTTATCTGTAGTC 239
consensus_5526#1 ATGGCACTTGGTTTTACNTTTTCTTTCCCTGTTANACAAATTTCAGTGTCTTCAG-GGTC 217
* * * * * * ** ** * **** * ** * ***
consensus_5526#0 AGTTCAATTTCCTTGTCAAATG--CTCATCAGCTTATGTGGAGTAAAGGAATTATGATGC 297
consensus_5526#1 A--TTAATTAGGTGGACAAAAGGATTTTCCATCAGANACACGGTTGGCAGAA-ATGTTGC 274
* * **** * * **** * * ** * * ** * *** ***
consensus_5526#0 CCATGTGCGTACCCTAAAACATTTCGTTAATCAGGTAGTAAACATG-GAGTGGGGGAATT 356
consensus_5526#1 TCAN-TGCTTAAA-TGAAGCGCTT-GCCAATTGTGGGCTAAATGTGCGGGTCACTGCATT 331
** *** ** * ** * ** * *** * **** ** * ** * ***
consensus_5526#0 TCTGGTCATCACATTTGCCAAGGACGCCATATGACATCTTGCTGGATGATGAAACACACA 416
consensus_5526#1 GGTGAATGATACAGTGGGGACATTAGCTCTAGGGCAT--TACT--ATGATGAAA-ACACA 386
** *** * * * ** ** * *** * ** ********* *****
consensus_5526#0 ATCGCAATGATCAGGTAGCAACCTGGGTAAAATTCAATTATTCTGGTATCTTGTGTTGTG 476
consensus_5526#1 GTGGC--TGCT---GTGATAATTGGGTCTGGCACCAACGCTTGCTACATTGAACGCACTG 441
* ** ** * ** ** ** *** ** ** * **
consensus_5526#0 GTTTAGACTGAACACTTTGTACTACCATGATTCA--GGGCTTTGAGAAAATGATATCAGG 534
consensus_5526#1 ATGCA-----ATTATCAAGTGCCANGGTCTTCTAACGAACTCTGGAAGCATGGTAATAAA 496
* * * * ** * * * * * * ** ** * *** ** *
consensus_5526#0 AATGTATCTTGGGGAAATTGCAAGATTGGTATTTCATAGAATGGCCCAGGAATCAGATGT 594
consensus_5526#1 CATGGAT---GGGGGAATT------CTGGTCNTCCACA--TTTGCCAAGGACCCATATGA 545
*** ** **** **** **** * ** * * *** **** ** ***
consensus_5526#0 TTTTGGTG-ATGCTGC-TGATAGTCTATCCAACCCTTTCATTTTGAGGTATGTCCGGATG 652
consensus_5526#1 CTCTGCTGGATGATGAACCACAATCCCCATGATCNGGGCTTGAAAAAATAAATCAGGA-- 603
* ** ** *** ** * * ** * * * * * ** ** ***
consensus_5526#0 TCAAATTCTACTGATGTTTGTTTCGTACCTGGTGTATTTCTGCATAAACACAATTAGTAA 712
consensus_5526#1 --ATGTTCTGGGGGAATTGCANATGGTTTTTNTANAATGGCCCAGGAATCAGATGTTTTT 661
* **** * ** * * * * * ** ** ** *
consensus_5526#0 AAAGAAGTTGTTCTATGTGTTGTCTGATTTCAATTTTGCAAATCCAGCACACCGTTTCTG 772
consensus_5526#1 GGTGATGCTGCTG-----ATAGTCT-ATCCAACCCTTTCATTTTGAGCACACCGTTTCTG 715
** * ** * * **** ** * ** ** * ***************
consensus_5526#0 GCCGCAATTCGCGAGGACGATTCACCAGATCTGAGCGAAGTCAGAAGGATACTTCGAGAA 832
consensus_5526#1 GCCGCAATTCGCGAGGACGATTCACCAGATCTGAGCGAAGTCAGAGGGATACTTCGAGAA 775
********************************************* **************
consensus_5526#0 CATCTGAAGGTTAGCTCAGAATTATTCCAGCCATTTCATCGGGCACCATTCTTTTTTCCA 892
consensus_5526#1 CATCTGAAG--------------------------------------------------- 784
*********
consensus_5526#0 TTCCATCCATCTAGTTGTCTGATGATTCTCTCTTCCAGATTCCCGATGCTCCTCTGAAAA 952
consensus_5526#1 --------------------------------------ATTCCCGATGCTCCTCTGAAAA 806
**********************
consensus_5526#0 CTCGACGGCTGGTCGTGAAAGTCTGCGACATTGTGACTCGCAGAGCCGCCCGTCTAGCCG 1012
consensus_5526#1 CTCGACGGCTGGTCGTGAAAGTCTGCGACATTGTGACTCGCAGAGCCGCCCGTCTAGCCG 866
************************************************************
consensus_5526#0 CTGCAGGCATCGTGGGGATACTGAAGAAGCTGGGGAGGGATGGGAGCGGCGCGGCGTCGA 1072
consensus_5526#1 CTGCAGGCATCGTGGGGATACTGAAGAAGCTGGGGAGGGATGGGAGCGGCGCGGCGTCGA 926
************************************************************
consensus_5526#0 GCGGGAGAGGTAGAGGGCAGCCGAGGAGGACGGTGGTGGCGATCGAGGGCGGGCTGTACC 1132
consensus_5526#1 GCGGGAGAGGTAGAGGGCAGCCGAGGAGGACGGTGGTGGCGATCGAGGGCGGGCTGTACC 986
************************************************************
consensus_5526#0 AGGGTTACCCGGTGTTCAGGGAGTACCTGGACGAGGCCCTGGTGGAGATCCTGGGGGAGG 1192
consensus_5526#1 AGGGTTACCCGGTGTTCAGGGAGTACCTGGACGAGGCCCTGGTGGAGATCCTGGGGGAGG 1046
************************************************************
consensus_5526#0 AGGTGGCGCGGAACGTGACGCTGAGGGTGACGGAGGATGGGTCGGGGGTCGGGGCTGCCC 1252
consensus_5526#1 AGGTGGCGCGGAACGTGACGCTGAGGGTGACGGAGGATGGGTCGGGGGTCGGGGCTGCCC 1106
************************************************************
consensus_5526#0 TCCTCGCCGCCGTACATCCGTCGAATAGACAGCAACAAGGAGGTCCCATATAGTGAGAGA 1312
consensus_5526#1 TCCTCGCCGCCGTACATTCGTCGAATAGACAGCAACAAGGGGGTCCCATATAGTGAGAGA 1166
***************** ********************** *******************
consensus_5526#0 GACAATGAAGATACAGCTAGCCCCTCTTGTTCAAATGTAAAAAAGGGACATTGTTTGATA 1372
consensus_5526#1 GACAATGAAGATACAGCTAGCCCCTCTTGTTCAAATGTAAAAAAGGGACATTGTTTGATA 1226
************************************************************
consensus_5526#0 TCTATATTCATATATATAAAAATCTGGGTCTTGTGCAGAGAAATCCCGTTTTTTCTTGGC 1432
consensus_5526#1 TCTATATTCATATATATAAAAATCTGGGTC------------------------------ 1256
******************************
consensus_5526#0 CTGCCATTCATGCTATGATAGTCTTACAGTATTTGCCATCTCTTGATTTCTGAATTCTCA 1492
consensus_5526#1 ------------------------------------------------------------
consensus_5526#0 CAGGCGAGGTGAATAAGGCGAAGTGAATGGAATGAGAGTATGAGACGAGTTACGTTCAGT 1552
consensus_5526#1 ------------------------------------------------------------
consensus_5526#0 AGCTTGGTTTTCTACTACAAGTGGGGAGCATGTAGTATATGTTTTCGCATGCGCTTTTCC 1612
consensus_5526#1 ------------------------------------------------------------
consensus_5526#0 ATTGGCAACGCACTGGATTCATGTAGCCTTGTTCTTTATTATGGCATATGGCATGCAACG 1672
consensus_5526#1 ------------------------------------------------------------
consensus_5526#0 TAGCTAGCTTGCATGACAGCATGAGTGCAAAACGACGTGCAATGGAGTGTAATACTAATA 1732
consensus_5526#1 ------------------------------------------------------------
consensus_5526#0 AAACTTATATAAAAAAAAGTGCACTCCACCTTTCAGGGATTAAAAATAAAAAATAAAAAT 1792
consensus_5526#1 ------------------------------------------------------------
consensus_5526#0 AAAACGGAGCC 1803
consensus_5526#1 -----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||