cluster # 5529

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Oryza sativa
cluster # 5529 cluster # 5529 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5529#0 length = 1151 sequences # 2

consensus_5529#1 length = 651 sequences # 1

consensusID : consensus_5529#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1151
fasta sequence

                              [GGCGGCGGTGTTCGACGCGATGGACGACAAGAACGCGTGGACGTACAGCGCCATGGTGTCCGGCTTGGCATTGCACGGCGACGGGCGTAAGGCGCTGGAGGTGTTCGACGCGATGGTCAGGGAGGGCCACAGGCCCGACGCCGCCGTGTACGTCGGCGTGCTGAACGCCTGCAGCCGCGCCGGCCTCCTCGAGGAAGGGCTCCGCTGCTTCGACCGGATGCGGCTGGAGCACAAGCTGACACCCAACGCGCAGCACTACGGCTGCATGGTGGACCTCATGGCGCGAGCGGGGAGGCTGGACGACGCGCGCGCGCTCATCGGGAGCATGCCCACGGGGCCGACGGACACGGCGTGGCGGAGCCTGCTCAACGCGTGCCGCATCCACGGCAACCTGGAGCTCGCCGAGCGCGCGCTGCAGGAGCTGGAGCGCCTCGGCGCCACCAACGCCGGCGACTACATAATCCTCTCCGACATGCACGCCAGGGCCCACAACCGGGACGCCGCCGCGGCGCGCCGGACGGAGGCGGTGGACAGGGGCCTCGCGCAGGCCCCCGGGTACAGCGCCGTCGAGGTGCACGGCGCGACGCACCGGTTCGTGTCGCAGGACAGGTCGCACCCGCGGGCGGACGACATCTACGAGATGCTGCACCAGATGGAGTGGCAGCTCCGGTTCGAGGGGTACACGCCCGACACGTCGGAGCTGGCGCTGGACGCAGGCGAGGAGGAGAAGCGGCGCGTGGTCGCGGCGCACAGCCAGAAGCTGGCCATGGCGTTCGGCCTGCTCAGCACGCCGGAGGGGGCGCCGGTGAGGGTCGTCACCAACCTCCGGATGAGCAAGGAGTGCCACGCGTACAGCGCGCTCATCTCGGAGATCTTCGGGAGGGAGATCGTCGTCAGGGACCGGAACCGGTTCCACCGCTTCAAGCGCGGCGCATGCAGCTGCAGAAACTACTGGTGAGACGGCTGGGCTGGCATAGTGGCATGGCATCTCTCTGTGATTGATGTAAATATGGACATTTTCCTTGTGTTTCATGCAAGTGTAAGATTAATTCCTTTGTTGTGTATGATCCACAATGTTAGATCAATTATAGTATTATACTGTTGTGCAATGAAAACAAGACTGATGAGTTATATAAATGATGGTAAATATG]

[+] EMBL AK105891             [GGCGGCGGTGTTCGACGCGATGGACGACAAGAACGCGTGGACGTACAGCGCCATGGTGTCCGGCTTGGCATTGCACGGCGACGGGCGTAAGGCGCTGGAGGTGTTCGACGCGATGGTCAGGGAGGGCCACAGGCCCGACGCCGCCGTGTACGTCGGCGTGCTGAACGCCTGCAGCCGCGCCGGCCTCCTCGAGGAAGGGCTCCGCTGCTTCGACCGGATGCGGCTGGAGCACAAGCTGACACCCAACGCGCAGCACTACGGCTGCATGGTGGACCTCATGGCGCGAGCGGGGAGGCTGGACGACGCGCGCGCGCTCATCGGGAGCATGCCCACGGGGCCGACGGACACGGCGTGGCGGAGCCTGCTCAACGCGTGCCGCATCCACGGCAACCTGGAGCTCGCCGAGCGCGCGCTGCAGGAGCTGGAGCGCCTCGGCGCCACCAACGCCGGCGACTACATAATCCTCTCCGACATGCACGCCAGGGCCCACAACCGGGACGCCGCCGCGGCGCGCCGGACGGAGGCGGTGGACAGGGGCCTCGCGCAGGCCCCCGGGTACAGCGCCGTCGAGGTGCACGGCGCGACGCACCGGTTCGTGTCGCAGGACAGGTCGCACCCGCGGGCGGACGACATCTACGAGATGCTGCACCAGATGGAGTGGCAGCTCCGGTTCGAGGGGTACACGCCCGACACGTCGGAGCTGGCGCTGGACGCAGGCGAGGAGGAGAAGCGGCGCGTGGTCGCGGCGCACAGCCAGAAGCTGGCCATGGCGTTCGGCCTGCTCAGCACGCCGGAGGGGGCGCCGGTGAGGGTCGTCACCAACCTCCGGATGAGCAAGGAGTGCCACGCGTACAGCGCGCTCATCTCGGAGATCTTCGGGAGGGAGATCGTCGTCAGGGACCGGAACCGGTTCCACCGCTTCAAGCGCGGCGCATGCAGCTGCAGAAACTACTGGTGAGACGGCTGGGCTGGCATAGTGGCATGGCATCTCTCTGTGATTGATGTAAATATGGACATTTTCCTTGTGTTTCATGCAAGTGTAAGATTAATTCCTTTGTTGTGTATGATCCACAATGTTAGATCAATTATAGTATTATACTGTTGTGCAATGAAAACAAGACTGATGAGTTATATAAATGATGGTAAATATG]
[+] EMBL AU174722             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGCACCAGATGGAGTGGCAGCTCCGGTTCGAGGGGTACACGCCCGACACGTCGGAGCTGGCGCTGGACGCAGGCGAGGAGGAGAAGCGGCGCGTGGTCGCGGCGCACAGCCAGAAGCTGGCCATGGCGTTCGGCCTGCTCAGCACGCCGGAGGGGGCGCCGGTGAGGGTCGTCACCAACCTCCGGATGAGCAAGGAGTGCCACGCGTACAGCGCGCTCATCTCGGAGATCTTCGGGAGGGAGATCGTCGTCAGGGACCGGAACCGGTTCCACCGCTTCAAGCGCGGCGCATGCAGCTGCAGAAACTACTGGTGAGACGGCTGGGCTGGCATAGTGGCATGGCATCTCTCTGTGATTGATGTAAATATGGACATTTTCCTTGTGTTTCATGCAAGTGTAAGATTAATTCCTTTGTTGTGTATGATCCNCAATGTTAGATCAATTATAGTAaaaaaaa                                                   ]




>consensus_5529#0
GGCGGCGGTGTTCGACGCGATGGACGACAAGAACGCGTGGACGTACAGCGCCATGGTGTC
CGGCTTGGCATTGCACGGCGACGGGCGTAAGGCGCTGGAGGTGTTCGACGCGATGGTCAG
GGAGGGCCACAGGCCCGACGCCGCCGTGTACGTCGGCGTGCTGAACGCCTGCAGCCGCGC
CGGCCTCCTCGAGGAAGGGCTCCGCTGCTTCGACCGGATGCGGCTGGAGCACAAGCTGAC
ACCCAACGCGCAGCACTACGGCTGCATGGTGGACCTCATGGCGCGAGCGGGGAGGCTGGA
CGACGCGCGCGCGCTCATCGGGAGCATGCCCACGGGGCCGACGGACACGGCGTGGCGGAG
CCTGCTCAACGCGTGCCGCATCCACGGCAACCTGGAGCTCGCCGAGCGCGCGCTGCAGGA
GCTGGAGCGCCTCGGCGCCACCAACGCCGGCGACTACATAATCCTCTCCGACATGCACGC
CAGGGCCCACAACCGGGACGCCGCCGCGGCGCGCCGGACGGAGGCGGTGGACAGGGGCCT
CGCGCAGGCCCCCGGGTACAGCGCCGTCGAGGTGCACGGCGCGACGCACCGGTTCGTGTC
GCAGGACAGGTCGCACCCGCGGGCGGACGACATCTACGAGATGCTGCACCAGATGGAGTG
GCAGCTCCGGTTCGAGGGGTACACGCCCGACACGTCGGAGCTGGCGCTGGACGCAGGCGA
GGAGGAGAAGCGGCGCGTGGTCGCGGCGCACAGCCAGAAGCTGGCCATGGCGTTCGGCCT
GCTCAGCACGCCGGAGGGGGCGCCGGTGAGGGTCGTCACCAACCTCCGGATGAGCAAGGA
GTGCCACGCGTACAGCGCGCTCATCTCGGAGATCTTCGGGAGGGAGATCGTCGTCAGGGA
CCGGAACCGGTTCCACCGCTTCAAGCGCGGCGCATGCAGCTGCAGAAACTACTGGTGAGA
CGGCTGGGCTGGCATAGTGGCATGGCATCTCTCTGTGATTGATGTAAATATGGACATTTT
CCTTGTGTTTCATGCAAGTGTAAGATTAATTCCTTTGTTGTGTATGATCCACAATGTTAG
ATCAATTATAGTATTATACTGTTGTGCAATGAAAACAAGACTGATGAGTTATATAAATGA
TGGTAAATATG

consensusID : consensus_5529#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 651
fasta sequence

                              [GATTTTTACTCCTCACGGTAAACGATTCTTGTGAACGCCGGCGCTCCATGTAGCATGGTGGGGGGTTTAGTGCTCTCCCAGGCGCAGCACCAGGTCGGGATCGCCGCGACGTCGCCGGCGCAGGCGCAGGCGGCGGAGCAGGCGGCCTTCAGGGGGAGGGATCACCGGGCGCCATGCGCGAACCTGGACGAGGCGAGGAAGGCGCACGCGCGGCACGTCAAGCTCGGCCTGCTCAGCACGCCGGAGGGGGCGCCGGTGAGGGTCGTCACCAACCTCCGGATGAGCAAGGAGTGCCACGCGTACAGCGCGCTCATCTCGGAGATCTTCGGGAGGGAGATCGTCGTCAGGGACCGGAACCGGTTCCACCGCTTCAAGCGCGGCGCATGCAGCTGCAGAAACTACTGGTGAGACGGCTGGGCTGGCATAGTGGCATGGCATCTCTCTGTGATTGATGTAAATATGGACATTTTCCTTGTGTTTCATGCAAGTGTAAGATTAATTCCTTTGTTGTGTATGATCCACAATGTTAGATCAATTATAGTATTATACTGTTGTGCAATGAAAACAAGACTGATGAGTTATATAAATGATGGTAAATATGCATTTCGAGTAACTAGTGCAACTATTGTTATTGATATTTGAAAGAGATTT]

[+] EMBL AK105680             [GATTTTTACTCCTCACGGTAAACGATTCTTGTGAACGCCGGCGCTCCATGTAGCATGGTGGGGGGTTTAGTGCTCTCCCAGGCGCAGCACCAGGTCGGGATCGCCGCGACGTCGCCGGCGCAGGCGCAGGCGGCGGAGCAGGCGGCCTTCAGGGGGAGGGATCACCGGGCGCCATGCGCGAACCTGGACGAGGCGAGGAAGGCGCACGCGCGGCACGTCAAGCTCGGCCTGCTCAGCACGCCGGAGGGGGCGCCGGTGAGGGTCGTCACCAACCTCCGGATGAGCAAGGAGTGCCACGCGTACAGCGCGCTCATCTCGGAGATCTTCGGGAGGGAGATCGTCGTCAGGGACCGGAACCGGTTCCACCGCTTCAAGCGCGGCGCATGCAGCTGCAGAAACTACTGGTGAGACGGCTGGGCTGGCATAGTGGCATGGCATCTCTCTGTGATTGATGTAAATATGGACATTTTCCTTGTGTTTCATGCAAGTGTAAGATTAATTCCTTTGTTGTGTATGATCCACAATGTTAGATCAATTATAGTATTATACTGTTGTGCAATGAAAACAAGACTGATGAGTTATATAAATGATGGTAAATATGCATTTCGAGTAACTAGTGCAACTATTGTTATTGATATTTGAAAGAGATTT]




>consensus_5529#1
GATTTTTACTCCTCACGGTAAACGATTCTTGTGAACGCCGGCGCTCCATGTAGCATGGTG
GGGGGTTTAGTGCTCTCCCAGGCGCAGCACCAGGTCGGGATCGCCGCGACGTCGCCGGCG
CAGGCGCAGGCGGCGGAGCAGGCGGCCTTCAGGGGGAGGGATCACCGGGCGCCATGCGCG
AACCTGGACGAGGCGAGGAAGGCGCACGCGCGGCACGTCAAGCTCGGCCTGCTCAGCACG
CCGGAGGGGGCGCCGGTGAGGGTCGTCACCAACCTCCGGATGAGCAAGGAGTGCCACGCG
TACAGCGCGCTCATCTCGGAGATCTTCGGGAGGGAGATCGTCGTCAGGGACCGGAACCGG
TTCCACCGCTTCAAGCGCGGCGCATGCAGCTGCAGAAACTACTGGTGAGACGGCTGGGCT
GGCATAGTGGCATGGCATCTCTCTGTGATTGATGTAAATATGGACATTTTCCTTGTGTTT
CATGCAAGTGTAAGATTAATTCCTTTGTTGTGTATGATCCACAATGTTAGATCAATTATA
GTATTATACTGTTGTGCAATGAAAACAAGACTGATGAGTTATATAAATGATGGTAAATAT
GCATTTCGAGTAACTAGTGCAACTATTGTTATTGATATTTGAAAGAGATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5529#0      GGCGGCGGTGTTCGACGCGATGGACGACAAGAACGCGTGGACGTACAGCGCCATGGTGTC 60
consensus_5529#1      ------------------------------------------------------------
                                                                                  

consensus_5529#0      CGGCTTGGCATTGCACGGCGACGGGCGTAAGGCGCTGGAGGTGTTCGACGCGATGGTCAG 120
consensus_5529#1      ------------------------------------------------------------
                                                                                  

consensus_5529#0      GGAGGGCCACAGGCCCGACGCCGCCGTGTACGTCGGCGTGCTGAACGCCTGCAGCCGCGC 180
consensus_5529#1      ------------------------------------------------------------
                                                                                  

consensus_5529#0      CGGCCTCCTCGAGGAAGGGCTCCGCTGCTTCGACCGGATGCGGCTGGAGCACAAGCTGAC 240
consensus_5529#1      ------------------------------------------------------------
                                                                                  

consensus_5529#0      ACCCAACGCGCAGCACTACGGCTGCATGGTGGACCTCATGGCGCGAGCGGGGAGGCTGGA 300
consensus_5529#1      ------------------------------------------------------------
                                                                                  

consensus_5529#0      CGACGCGCGCGCGCTCATCGGGAGCATGCCCACGGGGCCGACGGACACGGCGTGGCGGAG 360
consensus_5529#1      ------------------------------------------------------------
                                                                                  

consensus_5529#0      CCTGCTCAACGCGTGCCGCATCCACGGCAACCTGGAGCTCGCCGAGCGCGCGCTGCAGGA 420
consensus_5529#1      ------------------------------------------------------------
                                                                                  

consensus_5529#0      GCTGGAGCGCCTCGGCGCCACCAACGCCGGCGACTACATAATCCTCTCCGACATGCACGC 480
consensus_5529#1      ------------------------------------------------------------
                                                                                  

consensus_5529#0      CAGGGCCCACAACCGGGACGCCGCCGCGGCGCGCCGGACGGAGGCGGTGGACAGGGGCCT 540
consensus_5529#1      -------------------------------------------------------GATTT 5
                                                                             *   *

consensus_5529#0      CGCGCAGGCCCCCGGGTACAGCGCCGTCGAGGTGCACGGCGCGACGCACCGGTTCGTGTC 600
consensus_5529#1      T---TACTCCTCACGGTAAACGATTCTTGTGAACGCCGGCGCTCCATGTAG---CATGGT 59
                           *  ** *  **** *      * * *     ******  *     *   * **  

consensus_5529#0      GCAGGACAGGTCGCACCCGCGGGCGGACGACATCTACGAGAT-GCTGCACCAGATGGAGT 659
consensus_5529#1      GGGGGGTTTAGTGCTCTCCCAGGCGCAGCACCAGGTCGGGATCGCCGCGAC-GTCGCCGG 118
                      *  **       ** * * * **** *  **     ** *** ** **  * *  *  * 

consensus_5529#0      GGCAGCTCCGGTTCGAGGGGTACACGCCCGACACGTCGGAGCTGGCGCTGGACGC-AGGC 718
consensus_5529#1      CGCAGGCGCAGGCGGCGGAGCAGGCGGCCTTCAGGG-GGAGGGATCACCGGGCGCCATGC 177
                       ****   * *   * ** * *  ** **  ** *  ****    * * ** *** * **

consensus_5529#0      GAGGAGGAGAAGCGGCGCGTGGTCGCGGCGCACAGCCAGAAGCTGGCCATGGCGTTCGGC 778
consensus_5529#1      GCGAACCTGGA-CGAGGCGAGG--AAGGCGCACGCGCGGCA------CGTCAAGCTCGGC 228
                      * * *   * * **  *** **    *******   * * *      * *   * *****

consensus_5529#0      CTGCTCAGCACGCCGGAGGGGGCGCCGGTGAGGGTCGTCACCAACCTCCGGATGAGCAAG 838
consensus_5529#1      CTGCTCAGCACGCCGGAGGGGGCGCCGGTGAGGGTCGTCACCAACCTCCGGATGAGCAAG 288
                      ************************************************************

consensus_5529#0      GAGTGCCACGCGTACAGCGCGCTCATCTCGGAGATCTTCGGGAGGGAGATCGTCGTCAGG 898
consensus_5529#1      GAGTGCCACGCGTACAGCGCGCTCATCTCGGAGATCTTCGGGAGGGAGATCGTCGTCAGG 348
                      ************************************************************

consensus_5529#0      GACCGGAACCGGTTCCACCGCTTCAAGCGCGGCGCATGCAGCTGCAGAAACTACTGGTGA 958
consensus_5529#1      GACCGGAACCGGTTCCACCGCTTCAAGCGCGGCGCATGCAGCTGCAGAAACTACTGGTGA 408
                      ************************************************************

consensus_5529#0      GACGGCTGGGCTGGCATAGTGGCATGGCATCTCTCTGTGATTGATGTAAATATGGACATT 1018
consensus_5529#1      GACGGCTGGGCTGGCATAGTGGCATGGCATCTCTCTGTGATTGATGTAAATATGGACATT 468
                      ************************************************************

consensus_5529#0      TTCCTTGTGTTTCATGCAAGTGTAAGATTAATTCCTTTGTTGTGTATGATCCACAATGTT 1078
consensus_5529#1      TTCCTTGTGTTTCATGCAAGTGTAAGATTAATTCCTTTGTTGTGTATGATCCACAATGTT 528
                      ************************************************************

consensus_5529#0      AGATCAATTATAGTATTATACTGTTGTGCAATGAAAACAAGACTGATGAGTTATATAAAT 1138
consensus_5529#1      AGATCAATTATAGTATTATACTGTTGTGCAATGAAAACAAGACTGATGAGTTATATAAAT 588
                      ************************************************************

consensus_5529#0      GATGGTAAATATG----------------------------------------------- 1151
consensus_5529#1      GATGGTAAATATGCATTTCGAGTAACTAGTGCAACTATTGTTATTGATATTTGAAAGAGA 648
                      *************                                               

consensus_5529#0      ---
consensus_5529#1      TTT 651