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Oryza sativa
cluster # 5533 cluster # 5533       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5533#0 length = 1337 sequences # 2  
consensus_5533#1 length = 790 sequences # 1  

consensusID : consensus_5533#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1337
fasta sequence
                              [TCTGGACCACCGATTTCCAATCCAACGAACACTCTCGCTGCCGCGGCCGCCGCCTCCTCGCCCCATCCAGCACTCCACGCCCCTCGAATCCATCCGCCGCCGCCGCGATGCCGCCTCCGCCGCACGCCGCTTTCCTCCTCCGGTCCCGGGGTCTACTGCCTCCTCTCCTCCGACGAAGCCCCAGCTCCGGCCCGCCGCCTCCGCTCCTCCGCCCGACCAGGCAGCGCCGCGGCCTCTCCGTCCGCGCCTCCGCTGCGGAGCTCGCCGCCGGAGTTGCAGGGGTGGAGGATGCGGTGGTGGGCTTCGTCACCGGCAAGCGGAAGGCCACCGAGTTAGCCCACGCGGTGTGGAGAAGTATTGTTCGGAAAGGGGATACTGTGGTTGATGCCACATGCGGGAACGGCAATGATACATTCGCTATGCTTAAATGGTAGCTGATGAAAGAGTACAAGGGCGTGTATATGGGTTGGACATTCAGGAGTCCGCGATAGCCAGCACTTCCTCTTTTCTGAAAATGGCCGTCAATAGCCATGAGCTCGAACTTGTCAAGTTGTTTACAATCTGTCACAGTAGAATGGAGGAGGTCGTCCCAAAAGATTTCCCTGTCAGGCTTGTAGCATTCAACTTGGGCTATCTTCCAGGAGGAGATAAAACAATAATCACTGTACCTAAGACGACTGAGCTGGCTTTGCAAGCTGCCAGTAGCATTGTCAGTTCTGGGGGACTCATAAGTGTCCTTGTCTACATTGGACATCCAGGTGGAAGGGATGAACTTGATGTTGTTGAATCATTTGCATCAAGCTTGCCTATTGATACCTGGATGAGCTGCAAGTTTGAAATGCTCAATAGACCAGCGGCTCCAGTACTCATTCTCCTGTACAAGAAATGATCACACCTTCTATGACCTACTTGTGGGGAATGACGGAGTTAGTGAGCGACCACATGCTTACTTGCATGCCAAGTGCCACAATGACCAAGGATTCAAGATTTGAAGTTACAAGGCATTTCCATAGGATTTTACTGGGTGGACAGCTGTGGGTATTGATAACAACTTTTGAGAGCTTCTTTTTCGCCAGGCCAACTTTTGAGAGCTTCACAACTATATATATGTTTCAAGCACTGCAGTTTAAACGAAGGGCAATTGCTTTGAGCCACACTCGTGACTTTACTCCTTTTTAGGGTTGTGTTGATGTTTTGTATTGGCAACAATAAAGGGGTAGCACACGAGACATTAAAGTGGATGGATGCAAGGAGACAAGGGTTTAGACATGTTTAGGCATACCCTACTCTTGTTTCGTGGATTGGATCTGCCGGATTGTATTGATCATGGTGTTCTT]

[+] EMBL AK063707             [TCTGGACCACCGATTTCCAATCCAACGAACACTCTCGCTGCCGCGGCCGCCGCCTCCTCGCCCCATCCAGCACTCCACGCCCCTCGAATCCATCCGCCGCCGCCGCGATGCCGCCTCCGCCGCACGCCGCTTTCCTCCTCCGGTCCCGGGGTCTACTGCCTCCTCTCCTCCGACGAAGCCCCAGCTCCGGCCCGCCGCCTCCGCTCCTCCGCCCGACCAGGCAGCGCCGCGGCCTCTCCGTCCGCGCCTCCGCTGCGGAGCTCGCCGCCGGAGTTGCAGGGGTGGAGGATGCGGTGGTGGGCTTCGTCACCGGCAAGCGGAAGGCCACCGAGTTAGCCCACGCGGTGTGGAGAAGTATTGTTCGGAAAGGGGATACTGTGGTTGATGCCACATGCGGGAACGGCAATGATACATTCGCTATGCTTAAATGGTAGCTGATGAAAGAGTACAAGGGCGTGTATATGGGTTGGACATTCAGGAGTCCGCGATAGCCAGCACTTCCTCTTTTCTGAAAATGGCCGTCAATAGCCATGAGCTCGAACTTGTCAAGTTGTTTACAATCTGTCACAGTAGAATGGAGGAGGTCGTCCCAAAAGATTTCCCTGTCAGGCTTGTAGCATTCAACTTGGGCTATCTTCCAGGAGGAGATAAAACAATAATCACTGTACCTAAGACGACTGAGCTGGCTTTGCAAGCTGCCAGTAGCATTGTCAGTTCTGGGGGACTCATAAGTGTCCTTGTCTACATTGGACATCCAGGTGGAAGGGATGAACTTGATGTTGTTGAATCATTTGCATCAAGCTTGCCTATTGATACCTGGATGAGCTGCAAGTTTGAAATGCTCAATAGACCAGCGGCTCCAGTACTCATTCTCCTGTACAAGAAATGATCACACCTTCTATGACCTACTTGTGGGGAATGACGGAGTTAGTGAGCGACCACATGCTTACTTGCATGCCAAGTGCCACAATGACCAAGGATTCAAGATTTGAAGTTACAAGGCATTTCCATAGGATTTTACTGGGTGGACAGCTGTGGGTATTGATAACAACTTTTGAGAGCTTCTTTTTCGCCAGGCCAACTTTTGAGAGCTTCACAACTATATATATGTTTCAAGCACTGCAGTTTAAACGAAGGGCAATTGCTTTGAGCCACACTCGTGACTTTACTCCTTTTTAGGGTTGTGTTGATGTTTTGTATTGGCAACAATAAAGGGGTAGCACACGAGACATTAAAGTGGATGGATGCAAGGAGACAAGGGTTTAGACATGTTTAGGCATACCCTACTCTTGTTTCGTGGATTGGATCTGCCGGATTGTATTGATCATGGTGTTCTT]
[-] EMBL CB619325             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AATCNCTGTACCTAAGACGACTGAGCTGGCTTTGCAAGCTGCCAGTAGCATTGTCAGTTCTGGGGGACTCATAAGTGTCCTTGTCTACATTGGACATCCAGGTGGAAGGGATGAACTTGATGTTGTTGAATCATTTGCATCAAGCTTGCCTATTGATACCTGGATGAGCTGCAAGTTTGAAATGCTCAATAGACCAGCGGCTCCAGTACTCATTCTCCTGTACAAGAAATGATCACACCTTCTATGACCTACTTGTGGGGAATGACGGAGTTAGTGAGCGACCACATGCTTACTTGCATGCCAAGTGCCACAATGACCAAGGACTCAAGATTTGAAGTTACAAGGCATTTCCATAGGATTTTACTGGGTGGACAGCTGTGGGTATTGATAACAACTTTTGAGAGCTTCTTTTTCGCCAGGCCAACTTTTGAGAGCTTCACAACTATATATATGTTTCAAGCACTGCAGTTTAAACGAAGGGCAATTGCTTTGAGCCACACTCGTGACTTTACTCCTTTTTAGGGTTGTGTTGATGTTTTGTATTGGCAACAATAAAGGGGTAGCACACGAGACATTAAAGTGGATGGATGCAAGGAGACAAGGGTTTAGACATGTTTAGGCATACCCTACTCTTGTTTCGTGGATTGGAAAGGCCGGATTGTATTGATCATGG       ]


>consensus_5533#0 TCTGGACCACCGATTTCCAATCCAACGAACACTCTCGCTGCCGCGGCCGCCGCCTCCTCG CCCCATCCAGCACTCCACGCCCCTCGAATCCATCCGCCGCCGCCGCGATGCCGCCTCCGC CGCACGCCGCTTTCCTCCTCCGGTCCCGGGGTCTACTGCCTCCTCTCCTCCGACGAAGCC CCAGCTCCGGCCCGCCGCCTCCGCTCCTCCGCCCGACCAGGCAGCGCCGCGGCCTCTCCG TCCGCGCCTCCGCTGCGGAGCTCGCCGCCGGAGTTGCAGGGGTGGAGGATGCGGTGGTGG GCTTCGTCACCGGCAAGCGGAAGGCCACCGAGTTAGCCCACGCGGTGTGGAGAAGTATTG TTCGGAAAGGGGATACTGTGGTTGATGCCACATGCGGGAACGGCAATGATACATTCGCTA TGCTTAAATGGTAGCTGATGAAAGAGTACAAGGGCGTGTATATGGGTTGGACATTCAGGA GTCCGCGATAGCCAGCACTTCCTCTTTTCTGAAAATGGCCGTCAATAGCCATGAGCTCGA ACTTGTCAAGTTGTTTACAATCTGTCACAGTAGAATGGAGGAGGTCGTCCCAAAAGATTT CCCTGTCAGGCTTGTAGCATTCAACTTGGGCTATCTTCCAGGAGGAGATAAAACAATAAT CACTGTACCTAAGACGACTGAGCTGGCTTTGCAAGCTGCCAGTAGCATTGTCAGTTCTGG GGGACTCATAAGTGTCCTTGTCTACATTGGACATCCAGGTGGAAGGGATGAACTTGATGT TGTTGAATCATTTGCATCAAGCTTGCCTATTGATACCTGGATGAGCTGCAAGTTTGAAAT GCTCAATAGACCAGCGGCTCCAGTACTCATTCTCCTGTACAAGAAATGATCACACCTTCT ATGACCTACTTGTGGGGAATGACGGAGTTAGTGAGCGACCACATGCTTACTTGCATGCCA AGTGCCACAATGACCAAGGATTCAAGATTTGAAGTTACAAGGCATTTCCATAGGATTTTA CTGGGTGGACAGCTGTGGGTATTGATAACAACTTTTGAGAGCTTCTTTTTCGCCAGGCCA ACTTTTGAGAGCTTCACAACTATATATATGTTTCAAGCACTGCAGTTTAAACGAAGGGCA ATTGCTTTGAGCCACACTCGTGACTTTACTCCTTTTTAGGGTTGTGTTGATGTTTTGTAT TGGCAACAATAAAGGGGTAGCACACGAGACATTAAAGTGGATGGATGCAAGGAGACAAGG GTTTAGACATGTTTAGGCATACCCTACTCTTGTTTCGTGGATTGGATCTGCCGGATTGTA TTGATCATGGTGTTCTT



consensusID : consensus_5533#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 790
fasta sequence
                              [ATCCATCCGCCGCCGCCGCGATGCCGCCTCCGCCGCACGCCGCTTTCCTCCTCCGGTCCCGGGGTCTACTGCCTCCTCTCCTCCGACGAAGCCCCAGCTCCGGCCCGCCGCCTCCGCTCCTCCGCCCGACCAGGCAGCGCCGCGGCCTCTCCGTCCGCGCCTCCGCTGCGGAGCTCGCCGCCGGAGTTGCAGGGGTGGAGGATGCGGTGGTGGGCTTCGTCACCGGCAAGCGGAAGGCCACCGAGTTAGCCCACGCGGTGTGGAGAAGTATTGTTCGGAAAGGGGATACTGTGGTTGATGCCACATGCGGGAACGGCAATGATACATTCGCTATGCTTAAAATGGTAGCTGATGAAAGAGTACAAGGGCGTGTATATGGGTTGGACATTCAGGAGTCCGCGATAGCCAGCACTTCCTCTTTTCTGAAAATGGCCGTCAATAGCCATGAGATCTTAGTATATAGAAACAAGCATCATTGCCATATTCCCAGGAAATATCTGCAGTTTTGGGGTTGTTGCAATAACTTATCTTGGCTGCAGCTCGAACTTGTCAAGTTGTTTACAATCTGTCACAGTAGAATGGAGGAGGTCGTTCCAAAAGATTTCCCTGTCAGGCTTGTAGCATTCAACTTGGGCTATCTTCCAGGAGGAGATAAAACAATAATCACTGTACCTAAGACGACTGAGCTGGCTTTGCAAGCTGCCAGTAGCATTGTCAGTTCTGGGGGACTCATAAGTGTCCTTGTCTACATTGGACATCCAGGTGGAAGGGATGAACTTGATGTTGTTGA]

[+] EMBL CB619324             [ATCCATCCGCCGCCGCCGCGATGCCGCCTCCGCCGCACGCCGCTTTCCTCCTCCGGTCCCGGGGTCTACTGCCTCCTCTCCTCCGACGAAGCCCCAGCTCCGGCCCGCCGCCTCCGCTCCTCCGCCCGACCAGGCAGCGCCGCGGCCTCTCCGTCCGCGCCTCCGCTGCGGAGCTCGCCGCCGGAGTTGCAGGGGTGGAGGATGCGGTGGTGGGCTTCGTCACCGGCAAGCGGAAGGCCACCGAGTTAGCCCACGCGGTGTGGAGAAGTATTGTTCGGAAAGGGGATACTGTGGTTGATGCCACATGCGGGAACGGCAATGATACATTCGCTATGCTTAAAATGGTAGCTGATGAAAGAGTACAAGGGCGTGTATATGGGTTGGACATTCAGGAGTCCGCGATAGCCAGCACTTCCTCTTTTCTGAAAATGGCCGTCAATAGCCATGAGATCTTAGTATATAGAAACAAGCATCATTGCCATATTCCCAGGAAATATCTGCAGTTTTGGGGTTGTTGCAATAACTTATCTTGGCTGCAGCTCGAACTTGTCAAGTTGTTTACAATCTGTCACAGTAGAATGGAGGAGGTCGTTCCAAAAGATTTCCCTGTCAGGCTTGTAGCATTCAACTTGGGCTATCTTCCAGGAGGAGATAAAACAATAATCACTGTACCTAAGACGACTGAGCTGGCTTTGCAAGCTGCCAGTAGCATTGTCAGTTCTGGGGGACTCATAAGTGTCCTTGTCTACATTGGACATCCAGGTGGAAGGGATGAACTTGATGTTGTTGA]


>consensus_5533#1 ATCCATCCGCCGCCGCCGCGATGCCGCCTCCGCCGCACGCCGCTTTCCTCCTCCGGTCCC GGGGTCTACTGCCTCCTCTCCTCCGACGAAGCCCCAGCTCCGGCCCGCCGCCTCCGCTCC TCCGCCCGACCAGGCAGCGCCGCGGCCTCTCCGTCCGCGCCTCCGCTGCGGAGCTCGCCG CCGGAGTTGCAGGGGTGGAGGATGCGGTGGTGGGCTTCGTCACCGGCAAGCGGAAGGCCA CCGAGTTAGCCCACGCGGTGTGGAGAAGTATTGTTCGGAAAGGGGATACTGTGGTTGATG CCACATGCGGGAACGGCAATGATACATTCGCTATGCTTAAAATGGTAGCTGATGAAAGAG TACAAGGGCGTGTATATGGGTTGGACATTCAGGAGTCCGCGATAGCCAGCACTTCCTCTT TTCTGAAAATGGCCGTCAATAGCCATGAGATCTTAGTATATAGAAACAAGCATCATTGCC ATATTCCCAGGAAATATCTGCAGTTTTGGGGTTGTTGCAATAACTTATCTTGGCTGCAGC TCGAACTTGTCAAGTTGTTTACAATCTGTCACAGTAGAATGGAGGAGGTCGTTCCAAAAG ATTTCCCTGTCAGGCTTGTAGCATTCAACTTGGGCTATCTTCCAGGAGGAGATAAAACAA TAATCACTGTACCTAAGACGACTGAGCTGGCTTTGCAAGCTGCCAGTAGCATTGTCAGTT CTGGGGGACTCATAAGTGTCCTTGTCTACATTGGACATCCAGGTGGAAGGGATGAACTTG ATGTTGTTGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5533#0      TCTGGACCACCGATTTCCAATCCAACGAACACTCTCGCTGCCGCGGCCGCCGCCTCCTCG 60
consensus_5533#1      ------------------------------------------------------------
                                                                                  

consensus_5533#0      CCCCATCCAGCACTCCACGCCCCTCGAATCCATCCGCCGCCGCCGCGATGCCGCCTCCGC 120
consensus_5533#1      ---------------------------ATCCATCCGCCGCCGCCGCGATGCCGCCTCCGC 33
                                                 *********************************

consensus_5533#0      CGCACGCCGCTTTCCTCCTCCGGTCCCGGGGTCTACTGCCTCCTCTCCTCCGACGAAGCC 180
consensus_5533#1      CGCACGCCGCTTTCCTCCTCCGGTCCCGGGGTCTACTGCCTCCTCTCCTCCGACGAAGCC 93
                      ************************************************************

consensus_5533#0      CCAGCTCCGGCCCGCCGCCTCCGCTCCTCCGCCCGACCAGGCAGCGCCGCGGCCTCTCCG 240
consensus_5533#1      CCAGCTCCGGCCCGCCGCCTCCGCTCCTCCGCCCGACCAGGCAGCGCCGCGGCCTCTCCG 153
                      ************************************************************

consensus_5533#0      TCCGCGCCTCCGCTGCGGAGCTCGCCGCCGGAGTTGCAGGGGTGGAGGATGCGGTGGTGG 300
consensus_5533#1      TCCGCGCCTCCGCTGCGGAGCTCGCCGCCGGAGTTGCAGGGGTGGAGGATGCGGTGGTGG 213
                      ************************************************************

consensus_5533#0      GCTTCGTCACCGGCAAGCGGAAGGCCACCGAGTTAGCCCACGCGGTGTGGAGAAGTATTG 360
consensus_5533#1      GCTTCGTCACCGGCAAGCGGAAGGCCACCGAGTTAGCCCACGCGGTGTGGAGAAGTATTG 273
                      ************************************************************

consensus_5533#0      TTCGGAAAGGGGATACTGTGGTTGATGCCACATGCGGGAACGGCAATGATACATTCGCTA 420
consensus_5533#1      TTCGGAAAGGGGATACTGTGGTTGATGCCACATGCGGGAACGGCAATGATACATTCGCTA 333
                      ************************************************************

consensus_5533#0      TGCTTAAA-TGGTAGCTGATGAAAGAGTACAAGGGCGTGTATATGGGTTGGACATTCAGG 479
consensus_5533#1      TGCTTAAAATGGTAGCTGATGAAAGAGTACAAGGGCGTGTATATGGGTTGGACATTCAGG 393
                      ******** ***************************************************

consensus_5533#0      AGTCCGCGATAGCCAGCACTTCCTCTTTTCTGAAAATGGCCGTCAATAGCCATGAG---- 535
consensus_5533#1      AGTCCGCGATAGCCAGCACTTCCTCTTTTCTGAAAATGGCCGTCAATAGCCATGAGATCT 453
                      ********************************************************    

consensus_5533#0      ------------------------------------------------------------
consensus_5533#1      TAGTATATAGAAACAAGCATCATTGCCATATTCCCAGGAAATATCTGCAGTTTTGGGGTT 513
                                                                                  

consensus_5533#0      --------------------------CTCGAACTTGTCAAGTTGTTTACAATCTGTCACA 569
consensus_5533#1      GTTGCAATAACTTATCTTGGCTGCAGCTCGAACTTGTCAAGTTGTTTACAATCTGTCACA 573
                                                **********************************

consensus_5533#0      GTAGAATGGAGGAGGTCGTCCCAAAAGATTTCCCTGTCAGGCTTGTAGCATTCAACTTGG 629
consensus_5533#1      GTAGAATGGAGGAGGTCGTTCCAAAAGATTTCCCTGTCAGGCTTGTAGCATTCAACTTGG 633
                      ******************* ****************************************

consensus_5533#0      GCTATCTTCCAGGAGGAGATAAAACAATAATCACTGTACCTAAGACGACTGAGCTGGCTT 689
consensus_5533#1      GCTATCTTCCAGGAGGAGATAAAACAATAATCACTGTACCTAAGACGACTGAGCTGGCTT 693
                      ************************************************************

consensus_5533#0      TGCAAGCTGCCAGTAGCATTGTCAGTTCTGGGGGACTCATAAGTGTCCTTGTCTACATTG 749
consensus_5533#1      TGCAAGCTGCCAGTAGCATTGTCAGTTCTGGGGGACTCATAAGTGTCCTTGTCTACATTG 753
                      ************************************************************

consensus_5533#0      GACATCCAGGTGGAAGGGATGAACTTGATGTTGTTGAATCATTTGCATCAAGCTTGCCTA 809
consensus_5533#1      GACATCCAGGTGGAAGGGATGAACTTGATGTTGTTGA----------------------- 790
                      *************************************                       

consensus_5533#0      TTGATACCTGGATGAGCTGCAAGTTTGAAATGCTCAATAGACCAGCGGCTCCAGTACTCA 869
consensus_5533#1      ------------------------------------------------------------
                                                                                  

consensus_5533#0      TTCTCCTGTACAAGAAATGATCACACCTTCTATGACCTACTTGTGGGGAATGACGGAGTT 929
consensus_5533#1      ------------------------------------------------------------
                                                                                  

consensus_5533#0      AGTGAGCGACCACATGCTTACTTGCATGCCAAGTGCCACAATGACCAAGGATTCAAGATT 989
consensus_5533#1      ------------------------------------------------------------
                                                                                  

consensus_5533#0      TGAAGTTACAAGGCATTTCCATAGGATTTTACTGGGTGGACAGCTGTGGGTATTGATAAC 1049
consensus_5533#1      ------------------------------------------------------------
                                                                                  

consensus_5533#0      AACTTTTGAGAGCTTCTTTTTCGCCAGGCCAACTTTTGAGAGCTTCACAACTATATATAT 1109
consensus_5533#1      ------------------------------------------------------------
                                                                                  

consensus_5533#0      GTTTCAAGCACTGCAGTTTAAACGAAGGGCAATTGCTTTGAGCCACACTCGTGACTTTAC 1169
consensus_5533#1      ------------------------------------------------------------
                                                                                  

consensus_5533#0      TCCTTTTTAGGGTTGTGTTGATGTTTTGTATTGGCAACAATAAAGGGGTAGCACACGAGA 1229
consensus_5533#1      ------------------------------------------------------------
                                                                                  

consensus_5533#0      CATTAAAGTGGATGGATGCAAGGAGACAAGGGTTTAGACATGTTTAGGCATACCCTACTC 1289
consensus_5533#1      ------------------------------------------------------------
                                                                                  

consensus_5533#0      TTGTTTCGTGGATTGGATCTGCCGGATTGTATTGATCATGGTGTTCTT 1337
consensus_5533#1      ------------------------------------------------
                                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)