cluster # 5534

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Oryza sativa
cluster # 5534 cluster # 5534 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5534#0 length = 1072 sequences # 2

consensus_5534#1 length = 119 sequences # 1

consensusID : consensus_5534#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1072
fasta sequence

                              [GGCGCTATGCTCAGCGCATTGTGGAGTCGGCTGGCCTCAAGGACTGCAACCCTTGCGCCACTCCAATGGAAGAAAGGCTCAAGCTGAGCCGTGATAGCACGGCACCTCCCGTTGATGCAACAAAATATCGACGGCTGGTTGGTAGCCTTCGCTATCTTGTGCACACACGGCCAGACCTAGCATTTGCTGTTGGGTTCGTGAGTCGCTTCATGGAGCGGCCAACTGAGGAGCACATGGTGGCCGTGAAGCGCATTCTACGCTATGTCGCTGGCACGATGGAGTACGGACTTCATTACAAAAGGGAGAAAGAGGAGCAGCGGCTGATTGGTTACAGCGACAGCGACCTCGCCGGCGACATTGATACAAGGAGAAGCACAAGTGGCATGTTGTTTTTCCTTGGTTCAAGCTTGGTGAGTTGGCAATCCATCAAGCAGAGAGTGGTGGCTTTATCTTCCTGTGAAGCAGAATATGTTGCAGCCACCAATGCTGCCACACAAGGAATCTGGTTGGCTCGATTGCTCGGCGAACTTCTTGGGAAGCAACCTAAAGCGATCGAGCTAAAGGTGGACAGCAAGTCTGCCTTGGCGCTGGCAAAGAACCCTGTCTTCCATGAGCGCAGCAAGCATATTGATTTGCGCTATCACTTCATCAGAAGCTGCTTGGAGGAAGGAAGCATCAGCGCCAGCTTCATCACCACCATGGACCAGCTCGCTGACATTCTAACGAAGGCATTGGGGCGAGTTCGATTCCATGAGCTTGTTGCAAGGATTGGAGTGGTCAAGATTAGTTCAGAATAGAAGAACAAGGATTAAGGGGAGATTGTTAGTATAATCCTTGTTCTAGTTAGTTATTTGGTTTCCTTAGACAGTAAGCTATAGGCTGCAGCTGTTACTCGGTTGTCAGACTGCTGCTATTAGTGGTAGTAGTCAATTTTGATTTTACCTCTAGCAGGAACATAGCAGCAGCAGTATTGTCGGTTCAGCAACCGACCTATCCATGTACTATAAATATAGCTATTGTGCTAACATAAGTAAGCTTTTCAGCTCATTTTCAGTTTCAAAAAAAAAAAAAA]

[+] EMBL AK109905             [GGCGCTATGCTCAGCGCATTGTGGAGTCGGCTGGCCTCAAGGACTGCAACCCTTGCGCCACTCCAATGGAAGAAAGGCTCAAGCTGAGCCGTGATAGCACGGCACCTCCCGTTGATGCAACAAAATATCGACGGCTGGTTGGTAGCCTTCGCTATCTTGTGCACACACGGCCAGACCTAGCATTTGCTGTTGGGTTCGTGAGTCGCTTCATGGAGCGGCCAACTGAGGAGCACATGGTGGCCGTGAAGCGCATTCTACGCTATGTCGCTGGCACGATGGAGTACGGACTTCATTACAAAAGGGAGAAAGAGGAGCAGCGGCTGATTGGTTACAGCGACAGCGACCTCGCCGGCGACATTGATACAAGGAGAAGCACAAGTGGCATGTTGTTTTTCCTTGGTTCAAGCTTGGTGAGTTGGCAATCCATCAAGCAGAGAGTGGTGGCTTTATCTTCCTGTGAAGCAGAATATGTTGCAGCCACCAATGCTGCCACACAAGGAATCTGGTTGGCTCGATTGCTCGGCGAACTTCTTGGGAAGCAACCTAAAGCGATCGAGCTAAAGGTGGACAGCAAGTCTGCCTTGGCGCTGGCAAAGAACCCTGTCTTCCATGAGCGCAGCAAGCATATTGATTTGCGCTATCACTTCATCAGAAGCTGCTTGGAGGAAGGAAGCATCAGCGCCAGCTTCATCACCACCATGGACCAGCTCGCTGACATTCTAACGAAGGCATTGGGGCGAGTTCGATTCCATGAGCTTGTTGCAAGGATTGGAGTGGTCAAGATTAGTTCAGAATAGAAGAACAAGGATTAAGGGGAGATTGTTAGTATAATCCTTGTTCTAGTTAGTTATTTGGTTTCCTTAGACAGTAAGCTATAGGCTGCAGCTGTTACTCGGTTGTCAGACTGCTGCTATTAGTGGTAGTAGTCAATTTTGATTTTACCTCTAGCAGGAACATAGCAGCAGCAGTATTGTCGGTTCAGCAACCGACCTATCCATGTACTATAAATATAGCTATTGTGCTAACATAAGTAAGCT                                   ]
[-] EMBL CA759185             [                                                                                                                                                                                                                                                                                                                                                                                                                                            AAGCAGAGAGTGGTGGCTTTATCTTCCTGTGAAGCAGAATATGTTGCAGCCACCAATGCTGCCACACAAGGAATCTGGTTGGCTCGATTGCTCGGCGAACTTCTTGGGAAGCAACCTAAAGCGATCGAGCTAAAGGTGGACAGCAAGTCTGCCTTGGCGCTGGCAAAGAACCCTGTTTTCCATGAGCGCAGCAAGCATATTGATTTGCGCCATCACTTCATCAGAAGCTGCTTGGAGGAAGGAAGCATCAGCGCCAGCTTCATCACCACCATGGACCAGCTCGCTGACATTCTAACGAAGGCATTGGGGCGAGTTCGATTCCATGAGCTTGTTGCAAGGATTGGAGTGGTCAAGATTAGTTCAGAATAGAAGAACAAGGATTAAGGGGAGATTGTTAGTATAATCCTTGTTCTAGTTAGTTATTTGGTTTCCTTAGACAGTAAGCTATAGGCTACAGCTGTTACTCGGTTGTCAGACAGCTGCTATTAGTGGTAGTAGTCAATTTTGATTTTACCTCTAGCAGGAACATAGCAGCAGCAGTATTGTCGGTTCAGCAACCGACCTATCCATGTACTATAAATATAGCTATTGTGCTAACATAAGTATGCTTTTCAGCTCATTTTCAGTTTCAAAAAAAAAAAAAA]




>consensus_5534#0
GGCGCTATGCTCAGCGCATTGTGGAGTCGGCTGGCCTCAAGGACTGCAACCCTTGCGCCA
CTCCAATGGAAGAAAGGCTCAAGCTGAGCCGTGATAGCACGGCACCTCCCGTTGATGCAA
CAAAATATCGACGGCTGGTTGGTAGCCTTCGCTATCTTGTGCACACACGGCCAGACCTAG
CATTTGCTGTTGGGTTCGTGAGTCGCTTCATGGAGCGGCCAACTGAGGAGCACATGGTGG
CCGTGAAGCGCATTCTACGCTATGTCGCTGGCACGATGGAGTACGGACTTCATTACAAAA
GGGAGAAAGAGGAGCAGCGGCTGATTGGTTACAGCGACAGCGACCTCGCCGGCGACATTG
ATACAAGGAGAAGCACAAGTGGCATGTTGTTTTTCCTTGGTTCAAGCTTGGTGAGTTGGC
AATCCATCAAGCAGAGAGTGGTGGCTTTATCTTCCTGTGAAGCAGAATATGTTGCAGCCA
CCAATGCTGCCACACAAGGAATCTGGTTGGCTCGATTGCTCGGCGAACTTCTTGGGAAGC
AACCTAAAGCGATCGAGCTAAAGGTGGACAGCAAGTCTGCCTTGGCGCTGGCAAAGAACC
CTGTCTTCCATGAGCGCAGCAAGCATATTGATTTGCGCTATCACTTCATCAGAAGCTGCT
TGGAGGAAGGAAGCATCAGCGCCAGCTTCATCACCACCATGGACCAGCTCGCTGACATTC
TAACGAAGGCATTGGGGCGAGTTCGATTCCATGAGCTTGTTGCAAGGATTGGAGTGGTCA
AGATTAGTTCAGAATAGAAGAACAAGGATTAAGGGGAGATTGTTAGTATAATCCTTGTTC
TAGTTAGTTATTTGGTTTCCTTAGACAGTAAGCTATAGGCTGCAGCTGTTACTCGGTTGT
CAGACTGCTGCTATTAGTGGTAGTAGTCAATTTTGATTTTACCTCTAGCAGGAACATAGC
AGCAGCAGTATTGTCGGTTCAGCAACCGACCTATCCATGTACTATAAATATAGCTATTGT
GCTAACATAAGTAAGCTTTTCAGCTCATTTTCAGTTTCAAAAAAAAAAAAAA

consensusID : consensus_5534#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 119
fasta sequence

                              [TTTTTTTTTTTTTTAACAGCTGAAGCCTATAGCTTACTGTCTAAGGAAGCCAAATAACTAACTAGAACAAGGATTATACTAACACATAGGTCTAGGACTGCCCCCTTGTCTCGTCCTTC]

[+] EMBL CA760943             [TTTTTTTTTTTTTTAACAGCTGAAGCCTATAGCTTACTGTCTAAGGAAGCCAAATAACTAACTAGAACAAGGATTATACTAACACATAGGTCTAGGACTGCCCCCTTGTCTCGTCCTTC]




>consensus_5534#1
TTTTTTTTTTTTTTAACAGCTGAAGCCTATAGCTTACTGTCTAAGGAAGCCAAATAACTA
ACTAGAACAAGGATTATACTAACACATAGGTCTAGGACTGCCCCCTTGTCTCGTCCTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5534#0      GGCGCTATGCTCAGCGCATTGTGGAGTCGGCTGGCCTCAAGGACTGCAACCCTTGCGCCA 60
consensus_5534#1      ------------------------------------------------------------
                                                                                  

consensus_5534#0      CTCCAATGGAAGAAAGGCTCAAGCTGAGCCGTGATAGCACGGCACCTCCCGTTGATGCAA 120
consensus_5534#1      ------------------------------------------------------------
                                                                                  

consensus_5534#0      CAAAATATCGACGGCTGGTTGGTAGCCTTCGCTATCTTGTGCACACACGGCCAGACCTAG 180
consensus_5534#1      ------------------------------------------------------------
                                                                                  

consensus_5534#0      CATTTGCTGTTGGGTTCGTGAGTCGCTTCATGGAGCGGCCAACTGAGGAGCACATGGTGG 240
consensus_5534#1      ------------------------------------------------------------
                                                                                  

consensus_5534#0      CCGTGAAGCGCATTCTACGCTATGTCGCTGGCACGATGGAGTACGGACTTCATTACAAAA 300
consensus_5534#1      ------------------------------------------------------------
                                                                                  

consensus_5534#0      GGGAGAAAGAGGAGCAGCGGCTGATTGGTTACAGCGACAGCGACCTCGCCGGCGACATTG 360
consensus_5534#1      ------------------------------------------------------------
                                                                                  

consensus_5534#0      ATACAAGGAGAAGCACAAGTGGCATGTTGTTTTTCCTTGGTTCAAGCTTGGTGAGTTGGC 420
consensus_5534#1      ------------------------------------------------------------
                                                                                  

consensus_5534#0      AATCCATCAAGCAGAGAGTGGTGGCTTTATCTTCCTGTGAAGCAGAATATGTTGCAGCCA 480
consensus_5534#1      ------------------------------------------------------------
                                                                                  

consensus_5534#0      CCAATGCTGCCACACAAGGAATCTGGTTGGCTCGATTGCTCGGCGAACTTCTTGGGAAGC 540
consensus_5534#1      ------------------------------------------------------------
                                                                                  

consensus_5534#0      AACCTAAAGCGATCGAGCTAAAGGTGGACAGCAAGTCTGCCTTGGCGCTGGCAAAGAACC 600
consensus_5534#1      ------------------------------------------------------------
                                                                                  

consensus_5534#0      CTGTCTTCCATGAGCGCAGCAAGCATATTGATTTGCGCTATCACTTCATCAGAAGCTGCT 660
consensus_5534#1      ------------------------------------------------------------
                                                                                  

consensus_5534#0      TGGAGGAAGGAAGCATCAGCGCCAGCTTCATCACCACCATGGACCAGCTCGCTGACATTC 720
consensus_5534#1      ------------------------------------------------------------
                                                                                  

consensus_5534#0      TAACGAAGGCATTGGGGCGAGTTCGATTCCATGAGCTTGTTGCAAGGATTGGAGTGGTCA 780
consensus_5534#1      ------------------------------------------------------------
                                                                                  

consensus_5534#0      AGATTAGTTCAGAATAGAAGAACAAGGATTAAGGGGAGATTGTTAGTATAATCCTTGTTC 840
consensus_5534#1      ------------------------------------------------------------
                                                                                  

consensus_5534#0      TAGTTAGTTATTTGGTTTCCTTAGACAGTAAGCTATAGGCTGCAGCTGTTACTCGGTTGT 900
consensus_5534#1      ------------------------------------------------------------
                                                                                  

consensus_5534#0      CAGACTGCTGCTATTAGTGGTAGTAGTCAATTTTGATTTTACCTCTAGCAGGAACATAGC 960
consensus_5534#1      --------------------------------TTTTTTTTTTTTTTAACAGCTGAA-GCC 27
                                                      **  ****   * ** ***    *   *

consensus_5534#0      AGCAGCAGTATTGTCGGTTCAGCAACCGACCTATCCATGTACTATAAATATAGCTATTGT 1020
consensus_5534#1      TATAGC----TTACTGTCTAAGGAAGCCAAATAACTAACTAGAACAAGGATTATACTAAC 83
                         ***    **   *  * ** ** * *  ** * *  **  * **  **     *   

consensus_5534#0      GCTAACATAAGTAAGCTTTTCAGCTCATTTTCAGTTTCAAAAAAAAAAAAAA 1072
consensus_5534#1      AC--ATAGGTCTAGGACTGCCCCCTTGTCTCGTCCTTC-------------- 119
                       *  * *    ** *  *  *  **  * *     ***