These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5536#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 814 fasta sequence [AATCAACCAAATATACTCCCAGTATTAATGATATTAACAAAGGAAAGGTACAGGGAACAGTTTGCAAATATAATTACCCAAATACTTCCAAAATGCAAATCAATGCATCATCATTATCCACATGACCCGGAAAACAATACTTTAGGGGGGCTACTGATCGGAAAAAAAACAATACTTTAGGGGGGCTACTAATCGGAAATTCAGTTCCCTGACGGCAAATTTTCCCAAAATTAGGATCGTTTGTTACTTCAGGGTCTCTCTGCTGCTTCATACAAAAAAAAATAACCATTAAAATGTGGAAATGGTAAAATAATGAAGGGGACGGCAAGTAAATGCTAAAATGCACCATCACCCCCAAATAATATAAGGGACTTTAAGTGTTCCTGCAAAACAAGTCCCAAATTAAAAACAAAGCAAAACCTACCAAAAAAATGTGTACCAAATATGGAGTATAAAATGAAAGCAAATACTATATACTTATTATGGAATTAATAACTCGATATATTTCTTGGTTGAACTGATTTCCCCAAAACCTGGTTGGACTTGTAATGAAAACATACCATAAATGATGGTACATGACTCTTAAGCCCAAGGTACTAAATTACTAATGTTTTCTGCGATCAGCTACATGACACTGCGATAGATTGCTTCAACAGCCAATACTAATAAAACTTCCTGTCTCTCTACATTAGAGAACTGTAAGGCATGGTGGAGTACTCAGCTTATCTGTGCCTGCTGTTACAATTACAGTATCTTTACTTCTAAATTCACAGCCAAGCCACCACAAAATTGCACAGCTAGAGCGAATAAGTAC] [+] EMBL CB619417 [AATCAACCAAATATACTCCCAGTATTAATGATATTAACAAAGGAAAGGTACAGGGAACAGTTTGCAAATATAATTACCCAAATACTTCCAAAATGCAAATCAATGCATCATCATTATCCACATGACCCGGAAAACAATACTTTAGGGGGGCTACTGATCGGAAAAAAAACAATACTTTAGGGGGGCTACTAATCGGAAATTCAGTTCCCTGACGGCAAATTTTCCCAAAATTAGGATCGTTTGTTACTTCAGGGTCTCTCTGCTGCTTCATACAAAAAAAAATAACCATTAAAATGTGGAAATGGTAAAATAATGAAGGGGACGGCAAGTAAATGCTAAAATGCACCATCACCCCCAAATAATATAAGGGACTTTAAGTGTTCCTGCAAAACAAGTCCCAAATTAAAAACAAAGCAAAACCTACCAAAAAAATGTGTACCAAATATGGAGTATAAAATGAAAGCAAATACTATATACTTATTATGGAATTAATAACTCGATATATTTCTTGGTTGAACTGATTTCCCCAAAACCTGGTTGGACTTGTAATGAAAACATACCATAAATGATGGTACATGACTCTTAAGCCCAAGGTA ] [+] EMBL CB632145 [ AGTGACATTAAGTGTTCCTGCAGAACAAGTCACAGATTAGAAACAAAGCAGAAGCTACCAAAAAAATGTGTACCAAATATGGAGTATAAGATGAGAGCAAATACTATATACTTATTATGGAATTAATAACTCGATATATTTCTTGGTTGTACTGATTTCTCCAAAACCTGGTTGGACATGTAATGAAAACATAGCATAAATGATGGTACATGACTCTTAAGCACGAGGTACTAAATTACTAATGTTTTCTGCGATCAGCTACATGACACTGCGATAGATTGCTTCAACAGCCAATACTAATAAAACTTCCTGTCTCTCTACATTAGAGAACTGTAAGGCATGGTGGAGTACTCAGCTTATCTGTGCCTGCTGTTACAATTACAGTATCTTTACTTCTAAATTCACAGCCAAGCCACCACAAAATTGCACAGCTAGAGCGAATAAGTAC] consensusID : consensus_5536#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence [TTTTTACTCGCAGTAATAATGATAATAACAAAGGAAAGGTACAGGGAACAGTTTGCAAATATAATTAGCCAGATACATCCGAGATGCAGATCAATGCATCATCATTATCCACATGACCCGGAAAACAATACTTTAGTGGTGCTACTGATCGGTAAGAAAACAATACTTTAGTGGTGCTACTAATCGGTAATTCAGTTCACTGACGGCAGATTTTCCCAAGATTAGGATCGTTTGTTACTTCAGTGTCTCTCTGCTGCTTCATACAGAAAGAAATAAGCATTAAAATGTGGAAATGGTAAGATAATGAAGTGGACGGCAA] [+] EMBL CF279503 [TTTTTACTCGCAGTAATAATGATAATAACAAAGGAAAGGTACAGGGAACAGTTTGCAAATATAATTAGCCAGATACATCCGAGATGCAGATCAATGCATCATCATTATCCACATGACCCGGAAAACAATACTTTAGTGGTGCTACTGATCGGTAAGAAAACAATACTTTAGTGGTGCTACTAATCGGTAATTCAGTTCACTGACGGCAGATTTTCCCAAGATTAGGATCGTTTGTTACTTCAGTGTCTCTCTGCTGCTTCATACAGAAAGAAATAAGCATTAAAATGTGGAAATGGTAAGATAATGAAGTGGACGGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5536#0 AATCAACCAAATATACTCCCAGTATTAATGATATTAACAAAGGAAAGGTACAGGGAACAG 60 consensus_5536#1 ---------TTTTTACTCGCAGTAATAATGATAATAACAAAGGAAAGGTACAGGGAACAG 51 * ***** ***** ******** ************************** consensus_5536#0 TTTGCAAATATAATTACCCAAATACTTCCAAAATGCAAATCAATGCATCATCATTATCCA 120 consensus_5536#1 TTTGCAAATATAATTAGCCAGATACATCCGAGATGCAGATCAATGCATCATCATTATCCA 111 **************** *** **** *** * ***** ********************** consensus_5536#0 CATGACCCGGAAAACAATACTTTAGGGGGGCTACTGATCGGAAAAAAAACAATACTTTAG 180 consensus_5536#1 CATGACCCGGAAAACAATACTTTAGTGGTGCTACTGATCGGTAAGAAAACAATACTTTAG 171 ************************* ** ************ ** *************** consensus_5536#0 GGGGGCTACTAATCGGAAATTCAGTTCCCTGACGGCAAATTTTCCCAAAATTAGGATCGT 240 consensus_5536#1 TGGTGCTACTAATCGGTAATTCAGTTCACTGACGGCAGATTTTCCCAAGATTAGGATCGT 231 ** ************ ********** ********* ********** *********** consensus_5536#0 TTGTTACTTCAGGGTCTCTCTGCTGCTTCATACAAAAAAAAATAACCATTAAAATGTGGA 300 consensus_5536#1 TTGTTACTTCAGTGTCTCTCTGCTGCTTCATACAGAAAGAAATAAGCATTAAAATGTGGA 291 ************ ********************* *** ****** ************** consensus_5536#0 AATGGTAAAATAATGAAGGGGACGGCAAGTAAATGCTAAAATGCACCATCACCCCCAAAT 360 consensus_5536#1 AATGGTAAGATAATGAAGTGGACGGCAA-------------------------------- 319 ******** ********* ********* consensus_5536#0 AATATAAGGGACTTTAAGTGTTCCTGCAAAACAAGTCCCAAATTAAAAACAAAGCAAAAC 420 consensus_5536#1 ------------------------------------------------------------ consensus_5536#0 CTACCAAAAAAATGTGTACCAAATATGGAGTATAAAATGAAAGCAAATACTATATACTTA 480 consensus_5536#1 ------------------------------------------------------------ consensus_5536#0 TTATGGAATTAATAACTCGATATATTTCTTGGTTGAACTGATTTCCCCAAAACCTGGTTG 540 consensus_5536#1 ------------------------------------------------------------ consensus_5536#0 GACTTGTAATGAAAACATACCATAAATGATGGTACATGACTCTTAAGCCCAAGGTACTAA 600 consensus_5536#1 ------------------------------------------------------------ consensus_5536#0 ATTACTAATGTTTTCTGCGATCAGCTACATGACACTGCGATAGATTGCTTCAACAGCCAA 660 consensus_5536#1 ------------------------------------------------------------ consensus_5536#0 TACTAATAAAACTTCCTGTCTCTCTACATTAGAGAACTGTAAGGCATGGTGGAGTACTCA 720 consensus_5536#1 ------------------------------------------------------------ consensus_5536#0 GCTTATCTGTGCCTGCTGTTACAATTACAGTATCTTTACTTCTAAATTCACAGCCAAGCC 780 consensus_5536#1 ------------------------------------------------------------ consensus_5536#0 ACCACAAAATTGCACAGCTAGAGCGAATAAGTAC 814 consensus_5536#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||