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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5536#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 814 fasta sequence
[AATCAACCAAATATACTCCCAGTATTAATGATATTAACAAAGGAAAGGTACAGGGAACAGTTTGCAAATATAATTACCCAAATACTTCCAAAATGCAAATCAATGCATCATCATTATCCACATGACCCGGAAAACAATACTTTAGGGGGGCTACTGATCGGAAAAAAAACAATACTTTAGGGGGGCTACTAATCGGAAATTCAGTTCCCTGACGGCAAATTTTCCCAAAATTAGGATCGTTTGTTACTTCAGGGTCTCTCTGCTGCTTCATACAAAAAAAAATAACCATTAAAATGTGGAAATGGTAAAATAATGAAGGGGACGGCAAGTAAATGCTAAAATGCACCATCACCCCCAAATAATATAAGGGACTTTAAGTGTTCCTGCAAAACAAGTCCCAAATTAAAAACAAAGCAAAACCTACCAAAAAAATGTGTACCAAATATGGAGTATAAAATGAAAGCAAATACTATATACTTATTATGGAATTAATAACTCGATATATTTCTTGGTTGAACTGATTTCCCCAAAACCTGGTTGGACTTGTAATGAAAACATACCATAAATGATGGTACATGACTCTTAAGCCCAAGGTACTAAATTACTAATGTTTTCTGCGATCAGCTACATGACACTGCGATAGATTGCTTCAACAGCCAATACTAATAAAACTTCCTGTCTCTCTACATTAGAGAACTGTAAGGCATGGTGGAGTACTCAGCTTATCTGTGCCTGCTGTTACAATTACAGTATCTTTACTTCTAAATTCACAGCCAAGCCACCACAAAATTGCACAGCTAGAGCGAATAAGTAC]
[+] EMBL CB619417 [AATCAACCAAATATACTCCCAGTATTAATGATATTAACAAAGGAAAGGTACAGGGAACAGTTTGCAAATATAATTACCCAAATACTTCCAAAATGCAAATCAATGCATCATCATTATCCACATGACCCGGAAAACAATACTTTAGGGGGGCTACTGATCGGAAAAAAAACAATACTTTAGGGGGGCTACTAATCGGAAATTCAGTTCCCTGACGGCAAATTTTCCCAAAATTAGGATCGTTTGTTACTTCAGGGTCTCTCTGCTGCTTCATACAAAAAAAAATAACCATTAAAATGTGGAAATGGTAAAATAATGAAGGGGACGGCAAGTAAATGCTAAAATGCACCATCACCCCCAAATAATATAAGGGACTTTAAGTGTTCCTGCAAAACAAGTCCCAAATTAAAAACAAAGCAAAACCTACCAAAAAAATGTGTACCAAATATGGAGTATAAAATGAAAGCAAATACTATATACTTATTATGGAATTAATAACTCGATATATTTCTTGGTTGAACTGATTTCCCCAAAACCTGGTTGGACTTGTAATGAAAACATACCATAAATGATGGTACATGACTCTTAAGCCCAAGGTA ]
[+] EMBL CB632145 [ AGTGACATTAAGTGTTCCTGCAGAACAAGTCACAGATTAGAAACAAAGCAGAAGCTACCAAAAAAATGTGTACCAAATATGGAGTATAAGATGAGAGCAAATACTATATACTTATTATGGAATTAATAACTCGATATATTTCTTGGTTGTACTGATTTCTCCAAAACCTGGTTGGACATGTAATGAAAACATAGCATAAATGATGGTACATGACTCTTAAGCACGAGGTACTAAATTACTAATGTTTTCTGCGATCAGCTACATGACACTGCGATAGATTGCTTCAACAGCCAATACTAATAAAACTTCCTGTCTCTCTACATTAGAGAACTGTAAGGCATGGTGGAGTACTCAGCTTATCTGTGCCTGCTGTTACAATTACAGTATCTTTACTTCTAAATTCACAGCCAAGCCACCACAAAATTGCACAGCTAGAGCGAATAAGTAC]
consensusID : consensus_5536#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence
[TTTTTACTCGCAGTAATAATGATAATAACAAAGGAAAGGTACAGGGAACAGTTTGCAAATATAATTAGCCAGATACATCCGAGATGCAGATCAATGCATCATCATTATCCACATGACCCGGAAAACAATACTTTAGTGGTGCTACTGATCGGTAAGAAAACAATACTTTAGTGGTGCTACTAATCGGTAATTCAGTTCACTGACGGCAGATTTTCCCAAGATTAGGATCGTTTGTTACTTCAGTGTCTCTCTGCTGCTTCATACAGAAAGAAATAAGCATTAAAATGTGGAAATGGTAAGATAATGAAGTGGACGGCAA]
[+] EMBL CF279503 [TTTTTACTCGCAGTAATAATGATAATAACAAAGGAAAGGTACAGGGAACAGTTTGCAAATATAATTAGCCAGATACATCCGAGATGCAGATCAATGCATCATCATTATCCACATGACCCGGAAAACAATACTTTAGTGGTGCTACTGATCGGTAAGAAAACAATACTTTAGTGGTGCTACTAATCGGTAATTCAGTTCACTGACGGCAGATTTTCCCAAGATTAGGATCGTTTGTTACTTCAGTGTCTCTCTGCTGCTTCATACAGAAAGAAATAAGCATTAAAATGTGGAAATGGTAAGATAATGAAGTGGACGGCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5536#0 AATCAACCAAATATACTCCCAGTATTAATGATATTAACAAAGGAAAGGTACAGGGAACAG 60
consensus_5536#1 ---------TTTTTACTCGCAGTAATAATGATAATAACAAAGGAAAGGTACAGGGAACAG 51
* ***** ***** ******** **************************
consensus_5536#0 TTTGCAAATATAATTACCCAAATACTTCCAAAATGCAAATCAATGCATCATCATTATCCA 120
consensus_5536#1 TTTGCAAATATAATTAGCCAGATACATCCGAGATGCAGATCAATGCATCATCATTATCCA 111
**************** *** **** *** * ***** **********************
consensus_5536#0 CATGACCCGGAAAACAATACTTTAGGGGGGCTACTGATCGGAAAAAAAACAATACTTTAG 180
consensus_5536#1 CATGACCCGGAAAACAATACTTTAGTGGTGCTACTGATCGGTAAGAAAACAATACTTTAG 171
************************* ** ************ ** ***************
consensus_5536#0 GGGGGCTACTAATCGGAAATTCAGTTCCCTGACGGCAAATTTTCCCAAAATTAGGATCGT 240
consensus_5536#1 TGGTGCTACTAATCGGTAATTCAGTTCACTGACGGCAGATTTTCCCAAGATTAGGATCGT 231
** ************ ********** ********* ********** ***********
consensus_5536#0 TTGTTACTTCAGGGTCTCTCTGCTGCTTCATACAAAAAAAAATAACCATTAAAATGTGGA 300
consensus_5536#1 TTGTTACTTCAGTGTCTCTCTGCTGCTTCATACAGAAAGAAATAAGCATTAAAATGTGGA 291
************ ********************* *** ****** **************
consensus_5536#0 AATGGTAAAATAATGAAGGGGACGGCAAGTAAATGCTAAAATGCACCATCACCCCCAAAT 360
consensus_5536#1 AATGGTAAGATAATGAAGTGGACGGCAA-------------------------------- 319
******** ********* *********
consensus_5536#0 AATATAAGGGACTTTAAGTGTTCCTGCAAAACAAGTCCCAAATTAAAAACAAAGCAAAAC 420
consensus_5536#1 ------------------------------------------------------------
consensus_5536#0 CTACCAAAAAAATGTGTACCAAATATGGAGTATAAAATGAAAGCAAATACTATATACTTA 480
consensus_5536#1 ------------------------------------------------------------
consensus_5536#0 TTATGGAATTAATAACTCGATATATTTCTTGGTTGAACTGATTTCCCCAAAACCTGGTTG 540
consensus_5536#1 ------------------------------------------------------------
consensus_5536#0 GACTTGTAATGAAAACATACCATAAATGATGGTACATGACTCTTAAGCCCAAGGTACTAA 600
consensus_5536#1 ------------------------------------------------------------
consensus_5536#0 ATTACTAATGTTTTCTGCGATCAGCTACATGACACTGCGATAGATTGCTTCAACAGCCAA 660
consensus_5536#1 ------------------------------------------------------------
consensus_5536#0 TACTAATAAAACTTCCTGTCTCTCTACATTAGAGAACTGTAAGGCATGGTGGAGTACTCA 720
consensus_5536#1 ------------------------------------------------------------
consensus_5536#0 GCTTATCTGTGCCTGCTGTTACAATTACAGTATCTTTACTTCTAAATTCACAGCCAAGCC 780
consensus_5536#1 ------------------------------------------------------------
consensus_5536#0 ACCACAAAATTGCACAGCTAGAGCGAATAAGTAC 814
consensus_5536#1 ----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||