cluster # 5537

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Oryza sativa
cluster # 5537 cluster # 5537 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5537#0 length = 329 sequences # 2

consensus_5537#1 length = 301 sequences # 1

consensusID : consensus_5537#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 329
fasta sequence

                              [AGTGGAGGCTACTACCTAATTAATACGATATCCTACAAGAACAAGATGCGCGCCATGGTCGTCGTTCTTGTGCTCGCCGCGGCCGGGCCGCCGCTGCCACCACGAAGAAGAAGGAGTGCAACGNCGGCGACAAGGCCGCACTGCTGGCCATCAAGAANGCCCTCGGCGACCCCTACCACTTCGCCTCCTGGACGCCCGACAACCTCTGCTGCGAATGGTACGACGTCACCTGCGACGGACACCACCGACCGCGTCGTCGGCCTCTCCGTCTTTCAGGGACGGCAACCTCACCGGCACCATNCCCGACGGCGTGGACGGTCTTNATCCAA]

[+] EMBL OSS1975A             [AGTGGAGGCTACTACCTAATTAATACGATATCCTACAAGAACAAGATGCGCGCCATGGTCGTCGTTCTTGTGCTCGCCGCGGCCGGGCCGCCGCTGCCACCACGAAGAAGAAGGAGTGCAACGNCGGCGACAAGGCCGCACTGCTGGCCATCAAGAANGCCCTCGGCGACCCCTACCACTTCGCCTCCTGGACGCCCGACAACCTCTGCTGCGAATGGTACGACGTCACCTGCGACGGACACCACCGACCGCGTCGTCGGCCTCTCCGTCTTTCAGGGACGGCAACCTCACCGGCACCATNCCCGACGGCGTGGACGGTCTTNATCCAA]
[+] EMBL OSS1729A             [AGTGGAGGCTACTACCTAATTAATACGATATCCTACAAGAACAAGATGTGCGCCATGGTCGTCGTTCTTGTGCTCGCCGCGGCCGGGCCG CGCTGCCACNACGAAGAAGTAGGAGTGCAA GGCGGCGACAAGGNCGCACTNCTGGCCATCAAGTTNTNCCTCGGCGACCCCTACCACTTCGNCTCCTGGACGCCCGACAACCTCTGCTGCGAATGGTACGACGTCACCTGNGAC GACACCACCGACCGCGT GTCGGCCTCTNCGTCTTCCA GGACGCCAACCTCACCGGCACC                               ]




>consensus_5537#0
AGTGGAGGCTACTACCTAATTAATACGATATCCTACAAGAACAAGATGCGCGCCATGGTC
GTCGTTCTTGTGCTCGCCGCGGCCGGGCCGCCGCTGCCACCACGAAGAAGAAGGAGTGCA
ACGNCGGCGACAAGGCCGCACTGCTGGCCATCAAGAANGCCCTCGGCGACCCCTACCACT
TCGCCTCCTGGACGCCCGACAACCTCTGCTGCGAATGGTACGACGTCACCTGCGACGGAC
ACCACCGACCGCGTCGTCGGCCTCTCCGTCTTTCAGGGACGGCAACCTCACCGGCACCAT
NCCCGACGGCGTGGACGGTCTTNATCCAA

consensusID : consensus_5537#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 301
fasta sequence

                              [AGTGGAGGCTACTACCTAATTAATACGATATCCTACAAGAACAAGANGCGCGCCATGGTCGTCGTTCTTGTGCTCGCCGCGGNCGGGCCGNCGCTGCCACCACGAAGNAGAAGGAGTGCAACGACGGCGACAAGGCCGCACTGCTGGCCATCAAGNNNTCCCTCGGCGACCCCTACCANTTCGCCTCCTGGACGNCCGACAACCTNTNCTGCGAATGGTACGACGTCACCTNCGACGNCAACACCGACCGCNTCGTCGGNCTCTCCGTNTTTCAGGACGGCAACCTNAACGGCAACATTCC]

[+] EMBL OSS1718A             [AGTGGAGGCTACTACCTAATTAATACGATATCCTACAAGAACAAGANGCGCGCCATGGTCGTCGTTCTTGTGCTCGCCGCGGNCGGGCCGNCGCTGCCACCACGAAGNAGAAGGAGTGCAACGACGGCGACAAGGCCGCACTGCTGGCCATCAAGNNNTCCCTCGGCGACCCCTACCANTTCGCCTCCTGGACGNCCGACAACCTNTNCTGCGAATGGTACGACGTCACCTNCGACGNCAACACCGACCGCNTCGTCGGNCTCTCCGTNTTTCAGGACGGCAACCTNAACGGCAACATTCC]




>consensus_5537#1
AGTGGAGGCTACTACCTAATTAATACGATATCCTACAAGAACAAGANGCGCGCCATGGTC
GTCGTTCTTGTGCTCGCCGCGGNCGGGCCGNCGCTGCCACCACGAAGNAGAAGGAGTGCA
ACGACGGCGACAAGGCCGCACTGCTGGCCATCAAGNNNTCCCTCGGCGACCCCTACCANT
TCGCCTCCTGGACGNCCGACAACCTNTNCTGCGAATGGTACGACGTCACCTNCGACGNCA
ACACCGACCGCNTCGTCGGNCTCTCCGTNTTTCAGGACGGCAACCTNAACGGCAACATTC
C

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5537#0      AGTGGAGGCTACTACCTAATTAATACGATATCCTACAAGAACAAGATGCGCGCCATGGTC 60
consensus_5537#1      AGTGGAGGCTACTACCTAATTAATACGATATCCTACAAGAACAAGANGCGCGCCATGGTC 60
                      ********************************************** *************

consensus_5537#0      GTCGTTCTTGTGCTCGCCGCGGCCGGGCCGCCGCTGCCACCACGAAGAAGAAGGAGTGCA 120
consensus_5537#1      GTCGTTCTTGTGCTCGCCGCGGNCGGGCCGNCGCTGCCACCACGAAGNAGAAGGAGTGCA 120
                      ********************** ******* **************** ************

consensus_5537#0      ACGNCGGCGACAAGGCCGCACTGCTGGCCATCAAGAANGCCCTCGGCGACCCCTACCACT 180
consensus_5537#1      ACGACGGCGACAAGGCCGCACTGCTGGCCATCAAGNNNTCCCTCGGCGACCCCTACCANT 180
                      *** *******************************  * ******************* *

consensus_5537#0      TCGCCTCCTGGACGCCCGACAACCTCTGCTGCGAATGGTACGACGTCACCTGCGACGGAC 240
consensus_5537#1      TCGCCTCCTGGACGNCCGACAACCTNTNCTGCGAATGGTACGACGTCACCTNCGACGN-C 239
                      ************** ********** * *********************** *****  *

consensus_5537#0      ACCACCGACCGCGTCGTCGGCCTCTCCGTCTTTCAGGGACGGCAACCTCACCGGCACCAT 300
consensus_5537#1      AACACCGACCGCNTCGTCGGNCTCTCCGTNTTTCAGG-ACGGCAACCTNAACGGCAACAT 298
                      * ********** ******* ******** ******* ********** * ***** ***

consensus_5537#0      NCCCGACGGCGTGGACGGTCTTNATCCAA 329
consensus_5537#1      TCC-------------------------- 301
                       **