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Oryza sativa
cluster # 5538 cluster # 5538       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5538#0 length = 1757 sequences # 3  

consensusID : consensus_5538#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1757
fasta sequence
                              [TTGCTTTTGCGCAAGTTTCAAGCGATGCGCCACCGCGTCGGCCCCGCCGCCGCCGCCGCGGCGGCGCTCCGGCGGTTCTCCCACCTCCGCCCGCCGGCCCCGCCGGACCCGAGGCTCGCCTTCCTTCGCTCAGAGTTTGATGGCCGTGAGCCCGGCCGACAGCCACCGTCACCGGAAACAAGAGAGGAGCCAAAAGGTGGCGAGCGCGCGCGCTCGCCGGTGGCCGTGGATATCGCGCACCCGTGGCCGGAGTGGGTGGCGCTGATGGAGCTCCTCCTTCAGAGGGGCCACCTCGACGCCTCCGTGTTCGCCGGCGGCGCGGCTGGCTCGCCGTCCAAGGATTCCAACGTTATCCGCACCGCCTGCCTCCGGTTTGGGCGAGAGCGGCCGGAGCTTATCAGGCATCTATCAAGATGGGATATCCAGGTTGCTCTCCGGTATGGGTGCCCCAGCATTGACAGGAAGGTTGTTAATTCTGGGAAGCGATTACGTGCTCATGTAGGCCTTGATGAAGGAGAGGTCTGCAGCCAATGCAATTTAAGGGGTGGATGCGAGAGGGCATATGTAAAGGCTCGGAAGGAGGAAATTGGAAGAACTGTGGATGTTATGCGCATCCTTTTGACTTATGGGCTTGACACAGTTACTGGCAATGTGGAGAACAGAGCATGTCTAAACAAAACCGTTAAAGAATCCATTAAGAGCCTACTTAATGAGATTGTTGGGTTCGATTCCATGGGTCCTGGTTCCAGCACTGAAAAGCCCACACACCGTATGCCAAAAGGACAATCTTCTATTCCTATGAAGCAGGGTGATTGGAATTGTCCCAAATGCAACTTCTTGAACTTTGCAAAGAATATAAAATGTTTACGCTGCAATGGAGAATTTGAAGAGAGGTATCAGCTGCTCCATGAGAACCAAGAGCATCTTCCTCTCAAAAAGGGTGATTGGATATGCAAAAGGTGCAACTTTTTGAATTTTGCAAAGAATACAAGATGCCTTCAGTGCCATGAGAAACCAACAAACCGTCAACTCAATCCAGGGGAATGGGAGTGTGTCTCGTGTAATTATTTGAACTTCAA-GAGGAATGCATTCTGTTTGAAATGTGGTTGGAAAAGACCAAAATCATTGAACAACCAAGACAGTATTGAATCACAACGTGACTTAGATGATAATAAGCATTCTGCTATTTCATTTATCCAAGATGGCATCCAATCGAGGAGGCAAATTCTGCAAAATAAGGCTCCATTGTCTGACGAAGATTCAGACTTCTGGAGCTCCGAGGAGGAAGGGGCCTACCACAGTGACA--AAAACATTCCCCCAATAAAGAAGGATTACAAGTTCCTTGAAAGTTTTCCCATCATTGGGGGTAGGACTGCTATGTCTCAAGATCCTCTTGAGAGGGAGAAATGGAAGGACGAAATGTCCAGGAGAAACAAAGGGCTCCTAACAGAAGTATCAGAAGAAAGTAATCGGCCTTCGTGCCCCGTTCGTATTCCGAGAAGCATTGAGCAGATTGAATCTGGTGACGACGACGACGACGACATTTCATCATGGTTTTCTGGTGGTACTAGTAATATTAACATGAAAAAGGCATAGCCAGATTTCTGTAAACGCTAGTATCTGCACAATTTCATCTGTAATATTTACAGTGTAGGCATTCAGTAAGAAAAAATCATGTCTCGCAAAGAACTTCAGTATTGTACTTCTGCTATGATCTGTCTTGGCAAATAATATACTATGATTTTACAAAAAAAAAA]

[+] EMBL AK073205             [TTGCTTTTGCGCAAGTTTCAAGCGATGCGCCACCGCGTCGGCCCCGCCGCCGCCGCCGCGGCGGCGCTCCGGCGGTTCTCCCACCTCCGCCCGCCGGCCCCGCCGGACCCGAGGCTCGCCTTCCTTCGCTCAGAGTTTGATGGCCGTGAGCCCGGCCGACAGCCACCGTCACCGGAAACAAGAGAGGAGCCAAAAGGTGGCGAGCGCGCGCGCTCGCCGGTGGCCGTGGATATCGCGCACCCGTGGCCGGAGTGGGTGGCGCTGATGGAGCTCCTCCTTCAGAGGGGCCACCTCGACGCCTCCGTGTTCGCCGGCGGCGCGGCTGGCTCGCCGTCCAAGGATTCCAACGTTATCCGCACCGCCTGCCTCCGGTTTGGGCGAGAGCGGCCGGAGCTTATCAGGCATCTATCAAGATGGGATATCCAGGTTGCTCTCCGGTATGGGTGCCCCAGCATTGACAGGAAGGTTGTTAATTCTGGGAAGCGATTACGTGCTCATGTAGGCCTTGATGAAGGAGAGGTCTGCAGCCAATGCAATTTAAGGGGTGGATGCGAGAGGGCATATGTAAAGGCTCGGAAGGAGGAAATTGGAAGAACTGTGGATGTTATGCGCATCCTTTTGACTTATGGGCTTGACACAGTTACTGGCAATGTGGAGAACAGAGCATGTCTAAACAAAACCGTTAAAGAATCCATTAAGAGCCTACTTAATGAGATTGTTGGGTTCGATTCCATGGGTCCTGGTTCCAGCACTGAAAAGCCCACACACCGTATGCCAAAAGGACAATCTTCTATTCCTATGAAGCAGGGTGATTGGAATTGTCCCAAATGCAACTTCTTGAACTTTGCAAAGAATATAAAATGTTTACGCTGCAATGGAGAATTTGAAGAGAGGTATCAGCTGCTCCATGAGAACCAAGAGCATCTTCCTCTCAAAAAGGGTGATTGGATATGCAAAAGGTGCAACTTTTTGAATTTTGCAAAGAATACAAGATGCCTTCAGTGCCATGAGAAACCAACAAACCGTCAACTCAATCCAGGGGAATGGGAGTGTGTCTCGTGTAATTATTTGAACTTCAA GAGGAATGCATTCTGTTTGAAATGTGGTTGGAAAAGACCAAAATCATTGAACAACCAAGACAGTATTGAATCACAACGTGACTTAGATGATAATAAGCATTCTGCTATTTCATTTATCCAAGATGGCATCCAATCGAGGAGGCAAATTCTGCAAAATAAGGCTCCATTGTCTGACGAAGATTCAGACTTCTGGAGCTCCGAGGAGGAAGGGGCCTACCACAGTGACA  AAAACATTCCCCCAATAAAGAAGGATTACAAGTTCCTTGAAAGTTTTCCCATCATTGGGGGTAGGACTGCTATGTCTCAAGATCCTCTTGAGAGGGAGAAATGGAAGGACGAAATGTCCAGGAGAAACAAAGGGCTCCTAACAGAAGTATCAGAAGAAAGTAATCGGCCTTCGTGCCCCGTTCGTATTCCGAGAAGCATTGAGCAGATTGAATCTGGTGACGACGACGACGACGACATTTCATCATGGTTTTCTGGTGGTACTAGTAATATTAACATGAAAAAGGCATAGCCAGATTTCTGTAAACGCTAGTATCTGCACAATTTCATCTGTAATATTTACAGTGTAGGCATTCAGTAAGAAAAAATCATGTCTCGCAAAGAACTTCAGTATTGTACTTCTGCTATGATCTGTCTTGGCAAATAATATA                      ]
[+] EMBL AK098968             [      TTGCGCAAGTTTCAAGCGATGCGCCACCGCGTCGGCCCCGCCGCCGCCGCCGCGGCGGCGCTCCGGCGGTTCTCCCACCTCCGCCCGCCGGCCCCGCCGGACCCGAGGCTCGCCTTCCTTCGCTCAGAGTTTGATGGCCGTGAGCCCGGCCGACAGCCACCGTCACCGGAAACAAGAGAGGAGCCAAAAGGTGGCGAGCGCGCGCGCTCGCCGGTGGCCGTGGATATCGCGCACCCGTGGCCGGAGTGGGTGGCGCTGATGGAGCTCCTCCTTCAGAGGGGCCACCTCGACGCCTCCGTGTTCGCCGGCGGCGCGGCTGGCTCGCCGTCCAAGGATTCCAACGTTATCCGCACCGCCTGCCTCCGGTTTGGGCGAGAGCGGCCGGAGCTTATCAGGCATCTATCAAGATGGGATATCCAGGTTGCTCTCCGGTATGGGTGCCCCAGCATTGACAGGAAGGTTGTTAATTCTGGGAAGCGATTACGTGCTCATGTAGGCCTTGATGAAGGAGAGGTCTGCAGCCAATGCAATTTAAGGGGTGGATGCGAGAGGGCATATGTAAAGGCTCGGAAGGAGGAAATTGGAAGAACTGTGGATGTTATGCGCATCCTTTTGACTTATGGGCTTGACACAGTTACTGGCAATGTGGAGAACAGAGCATGTCTAAACAAAACCGTTAAAGAATCCATTAAGAGCCTACTTAATGAGATTGTTGGGTTCGATTCCATGGGTCCTGGTTCCAGCACTGAAAAGCCCACACACCGTATGCCAAAAGGACAATCTTCTATTCCTATGAAGCAGGGTGATTGGAATTGTCCCAAATGCAACTTCTTGAACTTTGCAAAGAATATAAAATGTTTACGCTGCAATGGAGAATTTGAAGAGAGGTATCAGCTGCTCCATGAGAACCAAGAGCATCTTCCTCTCAAAAAGGGTGATTGGATATGCAAAAGGTGCAACTTTTTGAATTTTGCAAAGAATACAAGATGCCTTCAGTGCCATGAGAAACCAACAAACCGTCAACTCAATCCAGGGGAATGGGAGTGTGTCTCGTGTAATTATTTGAACTTCAA GAGGAATGCATTCTGTTTGAAATGTGGTTGGAAAAGACCAAAATCATTGAACAACCAAGACAGTATTGAATCACAACGTGACTTAGATGATAATAAGCATTCTGCTATTTCATTTATCCAAGATGGCATCCAATCGAGGAGGCAAATTCTGCAAAATAAGGCTCCATTGTCTGACGAAGATTCAGACTTCTGGAGCTCCGAGGAGGAAGGGGCCTACCACAGTGACA  AAAACATTCCCCCAATAAAGAAGGATTACAAGTTCCTTGAAAGTTTTCCCATCATTGGGGGTAGGACTGCTATGTCTCAAGATCCTCTTGAGAGGGAGAAATGGAAGGACGAAATGTCCAGGAGAAACAAAGGGCTCCTAACAGAAGTATCAGAAGAAAGTAATCGGCCTTCGTGCCCCGTTCGTATTCCGAGAAGCATTGAGCAGATTGAATCTGGTGACGACGACGACGACGACATTTCATCATGGTTTTCTGGTGGTACTAGTAATATTAACATGAAAAAGGCATAGCCAGATTTCTGTAAACGCTAGTATCTGCACAATTTCATCTGTAATATTTACAGTGTAGGCATTCAGTAAGAAAAAATCATGTCTCGCAAAGAACTTCAGTATTGTACTTCTGCTATGATCTGTCTTGGCAAATAATATACTA                   ]
[-] EMBL CA759162             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TTATTTGAACTTCAACGAGGAATGCACTCTGTATGAAATGTGGTTGGAAAAGACCAAAATCATTGAGCATCCAAGACAGTAGTGAATCACATCGTGGCTTAGATGATAATAAGCATTCTGCTATTTCATTTATCCAAGATGGCATCCAATCGAGGAGGCAAATTCTGCAAAATAAGGCTCCATTGTCTGACGAAGATTCAGACTTTTGGAGCTCCGAGGAGGAAGGGGCCTACCACAGTGACAGCAGCCCATTCCCCCAATAAAGAAGGATTACAAGTTCCTTGAAAGTTTTCCCATCATTGGGGGTAGGAGTGCTATGTCTCAAGATCCTCTTGAGAGGGAGAAATGGAAGGACGAAATGTCCAGGAGAAACAAAGGGCTCCTAGCAAAAGTATCAGAAGAAAGTAATCGGCCTTCGTGCCCCGTTCGTATTCCGAGAAGCATTGAGCAGATTGAATCTGGT   GACGACGACGACGACATTTCATCATGGTTTTCTGGTGGTACTAGTAATATTAACATGAAAAAGGCATAGCCAGATTTCTGTAAACGCTAGTATCTGCACAATTTCATCTGTAATATTTACAGTGTAGGCATTCAGTAAGAAAAAATCATGTCTCGCAAAGAACTTCAGTATTGTACTTGTGCTATGATCTGTCTTGGCAAATAATATACTATGATTTTACAAAAAAAAAA]


>consensus_5538#0 TTGCTTTTGCGCAAGTTTCAAGCGATGCGCCACCGCGTCGGCCCCGCCGCCGCCGCCGCG GCGGCGCTCCGGCGGTTCTCCCACCTCCGCCCGCCGGCCCCGCCGGACCCGAGGCTCGCC TTCCTTCGCTCAGAGTTTGATGGCCGTGAGCCCGGCCGACAGCCACCGTCACCGGAAACA AGAGAGGAGCCAAAAGGTGGCGAGCGCGCGCGCTCGCCGGTGGCCGTGGATATCGCGCAC CCGTGGCCGGAGTGGGTGGCGCTGATGGAGCTCCTCCTTCAGAGGGGCCACCTCGACGCC TCCGTGTTCGCCGGCGGCGCGGCTGGCTCGCCGTCCAAGGATTCCAACGTTATCCGCACC GCCTGCCTCCGGTTTGGGCGAGAGCGGCCGGAGCTTATCAGGCATCTATCAAGATGGGAT ATCCAGGTTGCTCTCCGGTATGGGTGCCCCAGCATTGACAGGAAGGTTGTTAATTCTGGG AAGCGATTACGTGCTCATGTAGGCCTTGATGAAGGAGAGGTCTGCAGCCAATGCAATTTA AGGGGTGGATGCGAGAGGGCATATGTAAAGGCTCGGAAGGAGGAAATTGGAAGAACTGTG GATGTTATGCGCATCCTTTTGACTTATGGGCTTGACACAGTTACTGGCAATGTGGAGAAC AGAGCATGTCTAAACAAAACCGTTAAAGAATCCATTAAGAGCCTACTTAATGAGATTGTT GGGTTCGATTCCATGGGTCCTGGTTCCAGCACTGAAAAGCCCACACACCGTATGCCAAAA GGACAATCTTCTATTCCTATGAAGCAGGGTGATTGGAATTGTCCCAAATGCAACTTCTTG AACTTTGCAAAGAATATAAAATGTTTACGCTGCAATGGAGAATTTGAAGAGAGGTATCAG CTGCTCCATGAGAACCAAGAGCATCTTCCTCTCAAAAAGGGTGATTGGATATGCAAAAGG TGCAACTTTTTGAATTTTGCAAAGAATACAAGATGCCTTCAGTGCCATGAGAAACCAACA AACCGTCAACTCAATCCAGGGGAATGGGAGTGTGTCTCGTGTAATTATTTGAACTTCAAG AGGAATGCATTCTGTTTGAAATGTGGTTGGAAAAGACCAAAATCATTGAACAACCAAGAC AGTATTGAATCACAACGTGACTTAGATGATAATAAGCATTCTGCTATTTCATTTATCCAA GATGGCATCCAATCGAGGAGGCAAATTCTGCAAAATAAGGCTCCATTGTCTGACGAAGAT TCAGACTTCTGGAGCTCCGAGGAGGAAGGGGCCTACCACAGTGACAAAAACATTCCCCCA ATAAAGAAGGATTACAAGTTCCTTGAAAGTTTTCCCATCATTGGGGGTAGGACTGCTATG TCTCAAGATCCTCTTGAGAGGGAGAAATGGAAGGACGAAATGTCCAGGAGAAACAAAGGG CTCCTAACAGAAGTATCAGAAGAAAGTAATCGGCCTTCGTGCCCCGTTCGTATTCCGAGA AGCATTGAGCAGATTGAATCTGGTGACGACGACGACGACGACATTTCATCATGGTTTTCT GGTGGTACTAGTAATATTAACATGAAAAAGGCATAGCCAGATTTCTGTAAACGCTAGTAT CTGCACAATTTCATCTGTAATATTTACAGTGTAGGCATTCAGTAAGAAAAAATCATGTCT CGCAAAGAACTTCAGTATTGTACTTCTGCTATGATCTGTCTTGGCAAATAATATACTATG ATTTTACAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)