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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5540#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1524 fasta sequence
[GGTTTTAGGGTTTTTTTTTTCCCTTCTCCTCCCCATTCGCCGGCAAGCCTCCGCTCCCACGCGGCGACGGTCTCCTCCCATGGCGAAGAAGGGCGCGCCACGCAGGCAGCAGCCGGCGCCGGCGGCGCGGCAACTGGCCGTGGCGAAGAAGGGGAAGGCCCCCCCGAAGGCGGCGAAGAGGGCGCCGAAGAAGAAGCAGGAGCTGCTCGAGCCGTCCTCCGACGACTCCGAGCTGGAGCAGCAGCAGGAGCGGCTCCAGGAGGTGGAGGAGGATGAGTCAGGGTCGGACCTCGACGCCCCCCCGGACTCCGGCGCCGAGGAGCTCTCCGACTCCGACGATGCCTCCTTGGAGGGAGGAGACAGCGGCGACGAGGAGGACGATGACGAGGAGGAGGAGGAAGATGACGACGACCCCCTCGCTGACGACTTCCTCGCTGGAAGTAGTGACGACGAAAGTGCCGAAGGAGATGACTCCGGAGTGGATTCAGATGAGTCTGACGACCTTGAGGCTAAGTCACGAGCAATTGATGAAGCGAAGGGGAAGGCAGAAGAAGAAGCTGAGGAGGAACTCAAACTCAATATTAGATCAGAATCTGATGAGTTCCGATTGCCTACAAAGGAGGAGTTGGAGGAAGAGGCACTTAGACCACCAAACCTGCCACATCTTAAAAGGAGGATATCAGAAATTGTCCGGGTACTCTCAAACTTTAGTAAGCTAAGGCAAAAAGATGTGCCGCGAAAGGATTATGTCGATCAACTCAAGACTGATGTAATGTCATACTATGGATACAATGATTTTCTTGTTGAAGCATTTATTGAGATGTTCCCAGCTGTTGAGCTTGTTGAGCTACTGGAATCTTTTGAGAAAAGACCACCTGAGTGCTTGCGGACGAATACATTGAAGACCCGGAGAAGGGATCTTGCTGCTGCTCTTATACCAAGAGGATTTAATCTGGATCCGATAGGGAAGTGGTCAAAGGTTGGTCTGGTTGTATATGACTCCACCATTTCAGCTGGTGCCACTGTTGAATATATGGCTGGGCATTATATGAAACAAGGTGCAAGTTCTTTCTTGCCTGTGATGGCTCTTGCTCCTCAGGAGAAGGAGCGAATTGTTGATATGGCGGCTGCCCCAGGTGGCAAGACTACATATATTGGAGCTCTTATGAAGAATACTGGAATAATTTATGCAAATGAGTTCAATGAGAAAAGGTTGCATGGACTTTTGGGCAACATACATCGCATGGGTGTTACCAATACCATAGTTTGTAATTATGATGGTAAAGAGCTACCCAAAGTTCTTGGGATGAATTCGGTTGACAGAGTTCTTTTGGATGCGCCCTGCACAGGCACAGGGACCATTTGGAAGGACCCACAAATTAAAACATCGAAGGGCATTGAGGACATCAGAGACTGCGCTTTTGTACAAAAGCAACTCCTGTTAGCAGCTATTAATTTGGTTGATGCCAACTCCAAAACTGGCGGTTACATTGTTTACTCAACCTGTTCGTTGATGATTCCGGA]
[+] EMBL AK066732 [GGTTTTAGGGTTTTTTTTTTCCCTTCTCCTCCCCATTCGCCGGCAAGCCTCCGCTCCCACGCGGCGACGGTCTCCTCCCATGGCGAAGAAGGGCGCGCCACGCAGGCAGCAGCCGGCGCCGGCGGCGCGGCAACTGGCCGTGGCGAAGAAGGGGAAGGCCCCCCCGAAGGCGGCGAAGAGGGCGCCGAAGAAGAAGCAGGAGCTGCTCGAGCCGTCCTCCGACGACTCCGAGCTGGAGCAGCAGCAGGAGCGGCTCCAGGAGGTGGAGGAGGATGAGTCAGGGTCGGACCTCGACGCCCCCCCGGACTCCGGCGCCGAGGAGCTCTCCGACTCCGACGATGCCTCCTTGGAGGGAGGAGACAGCGGCGACGAGGAGGACGATGACGAGGAGGAGGAGGAAGATGACGACGACCCCCTCGCTGACGACTTCCTCGCTGGAAGTAGTGACGACGAAAGTGCCGAAGGAGATGACTCCGGAGTGGATTCAGATGAGTCTGACGACCTTGAGGCTAAGTCACGAGCAATTGATGAAGCGAAGGGGAAGGCAGAAGAAGAAGCTGAGGAGGAACTCAAACTCAATATTAGATCAGAATCTGATGAGTTCCGATTGCCTACAAAGGAGGAGTTGGAGGAAGAGGCACTTAGACCACCAAACCTGCCACATCTTAAAAGGAGGATATCAGAAATTGTCCGGGTACTCTCAAACTTTAGTAAGCTAAGGCAAAAAGATGTGCCGCGAAAGGATTATGTCGATCAACTCAAGACTGATGTAATGTCATACTATGGATACAATGATTTTCTTGTTGAAGCATTTATTGAGATGTTCCCAGCTGTTGAGCTTGTTGAGCTACTGGAATCTTTTGAGAAAAGACCACCTGAGTGCTTGCGGACGAATACATTGAAGACCCGGAGAAGGGATCTTGCTGCTGCTCTTATACCAAGAGGATTTAATCTGGATCCGATAGGGAAGTGGTCAAAGGTTGGTCTGGTTGTATATGACTCCACCATTTCAGCTGGTGCCACTGTTGAATATATGGCTGGGCATTATATGAAACAAGGTGCAAGTTCTTTCTTGCCTGTGATGGCTCTTGCTCCTCAGGAGAAGGAGCGAATTGTTGATATGGCGGCTGCCCCAGGTGGCAAGACTACATATATTGGAGCTCTTATGAAGAATACTGGAATAATTTATGCAAATGAGTTCAATGAGAAAAGGTTGCATGGACTTTTGGGCAACATACATCGCATGGGTGTTACCAATACCATAGTTTGTAATTATGATGGTAAAGAGCTACCCAAAGTTCTTGGGATGAATTCGGTTGACAGAGTTCTTTTGGATGCGCCCTGCACAGGCACAGGGACCATTTGGAAGGACCCACAAATTAAAACATCGAAGGGCATTGAGGACATCAGAGACTGCGCTTTTGTACAAAAGCAACTCCTGTTAGCAGCTATTAATTTGGTTGATGCCAACTCCAAAACTGGCGGTTACATTGTTTACTCAACCTGTTCGTTGATGATTCCGGA]
[+] EMBL AK073242 [ GTTTTAGGGTTTTTTTTTTCCCTTCTCCTCCCCATTCGCCGGCAAGCCTCCGCTCCCACGCGGCGGCGGTCTCCTCCCATGGCGAAGAAGGGCGCGCCACGCAGGCAGCAGCCGGCGCCGGCGGCGCGGCAACTGGCCGTGGCGAAGAAGGGGAAGGCCCCCCCGAAGGCGGCGAAGAGGGCGCCGAAGAAGAAGCAGGAGCTGCTCGAGCCGTCCTCCGACGACTCCGAGCTGGAGCAGCAGCAGGAGCGGCTCCAGGAGGTGGAGGAGGATGAGTCAGGGTCGGACCTCGACGCCCCCTCGGACTCCGGCGCCGAGGAGCTCTCCGACTCCGACGATGCCTCCTTGGAGGGAGGAGACAGCGGCGACGAGGAGGACGATGACGAGGAGGAGGAGGAAGATGACGACGACCCCCTCGCTGACGACTTCCTCGCTGGAAGTAGTGACGACGAAAGTGCCGAAGGAGATGACTCCGGAGTGGATTCAGATGAGTCTGACGACCTTGAGGCTAAGTCACGAGCAATTGATGAAGCGAAGGGGAAGGCAGAAGAAGAAGCTGAGGAGGAACTCAAACTCAATATTAGATCAGAATCTGATGAGTTCCGATTGCCTACAAAGGAGGAGTTGGAGGAATAGGCACTTAGACCACCAAACCTGCCACATCTTAAAAGGAGGATATCAGAAATTGTCCGGGTACTCTCAAACTTTAGTAAGCTAAGGCAAAAAGATGTGCCGCGAAAGGATTATGTCGATCAACTCAAGACTGATGTAATGTCATACTATGGATACAATGATTTTCTTGTTGAAGCATTTATTGAGATGTTCCCAGCTGTTGAGCTTGTTGAGCTACTGGAATCTTTTGAGAAAAGACCACCTGAGTGCTTGCGGACGAATACATTGAAGACCCGGAGAAGGGATCTTGCTGCTGCTCTTATACCAAGAGGATTTAATCTGGATCCGATAGGGAAGTGGTCAAAGGTTGGTCTGGTTGTATATGACTCCACCATTTCAGCTGGTGCCACTGTTGAATATATGGCTGGGCATTATATGAAACAAGGTGCAAGTTCTTTCTTGCCTGTGATGGCTCTTGCTCCTCAGGAGAAGGAGCGAATTGTTGATATGGCGGCTGCCCCAGGTGGCAAGACTACATATATTGGAGCTCTTATGAAGAATACTGGAATAATTTATGCAAATGAGTTCAATGAGAAAAGGTTGCATGGACTTTTGGGCAACATACATCGCATGGGTGTTACCAATACAATAGTTTGTAATTATGATGGTAAAGAGCTACCCAAAGTTCTTGGGATGAATTCGGTTGACAGAGTTCTTTTGGATGCGCCCTGCACAGGCACAGGGACCATTTGGAAGGACCCACAAATTAAAACATCGAAGGGCATTGAGGACATCAGAGACTGCGCTTTTGTACAAAAGCAACTCCTGTTAGCAGCTATTGATTTGGTTGATGCCAACTCCAAAACTGGCGGTTACATTGTTTACTCAACCTGTTCGTTGATGATTCCGGA]
consensusID : consensus_5540#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence
[ATGAGGATGGCGACGACGACCCCCTCGCTGACGACTTCCTCGCCGGCAGTGACGACGAAAGTGACGGAGGAGACGACTCTGGTGTGGACTCAGATGAGTCTGATGACTTAGAGGCGAAGTCGCGAGCGATTGATGAAGAGAAAGAGAAGGCAGAAGAAGAGGCTGAGGAGGAGCTCAAGCTCAATATTAGATCAGAATCTGATGAGTTCCGATTGCCCACAAAGGAGGAGTTGGAGGAAGAGGCACTTCGACCACCAAACCTGCCGAATCTTAAAAGGAGGATATCAGAAATTGTCCGGGTACTCTCAAACTTTAGTAAGCTGAGGCAAAAAGATGTGCCGCGAAAGGATTATGTCAATCAGCTGAAGACAGATATAATGTCATACTATGGATACAATGATTTTCTCGTTGAAGCATTTATTGAGATGTTCCCAGCTGTGGAGCTTGTTGAACTACTGGAATCTTTTGAGAAAAGACCGCCTGAATGCTTACGAACAAATACATTGAAGACCCGGAGAAGGGATCTTGCTGCTGCTCTTATACCAAGAGGATTTAATCTGGATCCGATAGGGAAGTGGTCAAAGGTAGGCCTTGTTGTATACGACTCCACCATTTCAGCTGGTGCCACTGTTGAATATATGGGCTGG]
[+] EMBL CF306237 [ATGAGGATGGCGACGACGACCCCCTCGCTGACGACTTCCTCGCCGGCAGTGACGACGAAAGTGACGGAGGAGACGACTCTGGTGTGGACTCAGATGAGTCTGATGACTTAGAGGCGAAGTCGCGAGCGATTGATGAAGAGAAAGAGAAGGCAGAAGAAGAGGCTGAGGAGGAGCTCAAGCTCAATATTAGATCAGAATCTGATGAGTTCCGATTGCCCACAAAGGAGGAGTTGGAGGAAGAGGCACTTCGACCACCAAACCTGCCGAATCTTAAAAGGAGGATATCAGAAATTGTCCGGGTACTCTCAAACTTTAGTAAGCTGAGGCAAAAAGATGTGCCGCGAAAGGATTATGTCAATCAGCTGAAGACAGATATAATGTCATACTATGGATACAATGATTTTCTCGTTGAAGCATTTATTGAGATGTTCCCAGCTGTGGAGCTTGTTGAACTACTGGAATCTTTTGAGAAAAGACCGCCTGAATGCTTACGAACAAATACATTGAAGACCCGGAGAAGGGATCTTGCTGCTGCTCTTATACCAAGAGGATTTAATCTGGATCCGATAGGGAAGTGGTCAAAGGTAGGCCTTGTTGTATACGACTCCACCATTTCAGCTGGTGCCACTGTTGAATATATGGGCTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5540#0 GGTTTTAGGGTTTTTTTTTTCCCTTCTCCTCCCCATTCGCCGGCAAGCCTCCGCTCCCAC 60
consensus_5540#1 ------------------------------------------------------------
consensus_5540#0 GCGGCGACGGTCTCCTCCCATGGCGAAGAAGGGCGCGCCACGCAGGCAGCAGCCGGCGCC 120
consensus_5540#1 ------------------------------------------------------------
consensus_5540#0 GGCGGCGCGGCAACTGGCCGTGGCGAAGAAGGGGAAGGCCCCCCCGAAGGCGGCGAAGAG 180
consensus_5540#1 ------------------------------------------------------------
consensus_5540#0 GGCGCCGAAGAAGAAGCAGGAGCTGCTCGAGCCGTCCTCCGACGACTCCGAGCTGGAGCA 240
consensus_5540#1 ------------------------------------------------------------
consensus_5540#0 GCAGCAGGAGCGGCTCCAGGAGGTGGAGGAGGATGAGTCAGGGTCGGACCTCGACGCCCC 300
consensus_5540#1 ------------------------------------------------------------
consensus_5540#0 CCCGGACTCCGGCGCCGAGGAGCTCTCCGACTCCGACGATGCCTCCTTGGAGGGAGGAGA 360
consensus_5540#1 ------------------------------------------------------------
consensus_5540#0 CAGCGGCGACGAGGAGGACGATGACGAGGAGGAGGAGGAAGATGACGACGACCCCCTCGC 420
consensus_5540#1 --------------------------------ATGAGGATGGCGACGACGACCCCCTCGC 28
* ***** * *****************
consensus_5540#0 TGACGACTTCCTCGCTGGAAGTAGTGACGACGAAAGTGCCGAAGGAGATGACTCCGGAGT 480
consensus_5540#1 TGACGACTTCCTCGCCG---GCAGTGACGACGAAAGTGACGGAGGAGACGACTCTGGTGT 85
*************** * * **************** ** ****** ***** ** **
consensus_5540#0 GGATTCAGATGAGTCTGACGACCTTGAGGCTAAGTCACGAGCAATTGATGAAGCGAAGGG 540
consensus_5540#1 GGACTCAGATGAGTCTGATGACTTAGAGGCGAAGTCGCGAGCGATTGATGAAGAGAAAGA 145
*** ************** *** * ***** ***** ***** ********** *** *
consensus_5540#0 GAAGGCAGAAGAAGAAGCTGAGGAGGAACTCAAACTCAATATTAGATCAGAATCTGATGA 600
consensus_5540#1 GAAGGCAGAAGAAGAGGCTGAGGAGGAGCTCAAGCTCAATATTAGATCAGAATCTGATGA 205
*************** *********** ***** **************************
consensus_5540#0 GTTCCGATTGCCTACAAAGGAGGAGTTGGAGGAAGAGGCACTTAGACCACCAAACCTGCC 660
consensus_5540#1 GTTCCGATTGCCCACAAAGGAGGAGTTGGAGGAAGAGGCACTTCGACCACCAAACCTGCC 265
************ ****************************** ****************
consensus_5540#0 ACATCTTAAAAGGAGGATATCAGAAATTGTCCGGGTACTCTCAAACTTTAGTAAGCTAAG 720
consensus_5540#1 GAATCTTAAAAGGAGGATATCAGAAATTGTCCGGGTACTCTCAAACTTTAGTAAGCTGAG 325
******************************************************* **
consensus_5540#0 GCAAAAAGATGTGCCGCGAAAGGATTATGTCGATCAACTCAAGACTGATGTAATGTCATA 780
consensus_5540#1 GCAAAAAGATGTGCCGCGAAAGGATTATGTCAATCAGCTGAAGACAGATATAATGTCATA 385
******************************* **** ** ***** *** **********
consensus_5540#0 CTATGGATACAATGATTTTCTTGTTGAAGCATTTATTGAGATGTTCCCAGCTGTTGAGCT 840
consensus_5540#1 CTATGGATACAATGATTTTCTCGTTGAAGCATTTATTGAGATGTTCCCAGCTGTGGAGCT 445
********************* ******************************** *****
consensus_5540#0 TGTTGAGCTACTGGAATCTTTTGAGAAAAGACCACCTGAGTGCTTGCGGACGAATACATT 900
consensus_5540#1 TGTTGAACTACTGGAATCTTTTGAGAAAAGACCGCCTGAATGCTTACGAACAAATACATT 505
****** ************************** ***** ***** ** ** ********
consensus_5540#0 GAAGACCCGGAGAAGGGATCTTGCTGCTGCTCTTATACCAAGAGGATTTAATCTGGATCC 960
consensus_5540#1 GAAGACCCGGAGAAGGGATCTTGCTGCTGCTCTTATACCAAGAGGATTTAATCTGGATCC 565
************************************************************
consensus_5540#0 GATAGGGAAGTGGTCAAAGGTTGGTCTGGTTGTATATGACTCCACCATTTCAGCTGGTGC 1020
consensus_5540#1 GATAGGGAAGTGGTCAAAGGTAGGCCTTGTTGTATACGACTCCACCATTTCAGCTGGTGC 625
********************* ** ** ******** ***********************
consensus_5540#0 CACTGTTGAATATATGGCTGGGCATTATATGAAACAAGGTGCAAGTTCTTTCTTGCCTGT 1080
consensus_5540#1 CACTGTTGAATATATGGGCTGG-------------------------------------- 647
***************** **
consensus_5540#0 GATGGCTCTTGCTCCTCAGGAGAAGGAGCGAATTGTTGATATGGCGGCTGCCCCAGGTGG 1140
consensus_5540#1 ------------------------------------------------------------
consensus_5540#0 CAAGACTACATATATTGGAGCTCTTATGAAGAATACTGGAATAATTTATGCAAATGAGTT 1200
consensus_5540#1 ------------------------------------------------------------
consensus_5540#0 CAATGAGAAAAGGTTGCATGGACTTTTGGGCAACATACATCGCATGGGTGTTACCAATAC 1260
consensus_5540#1 ------------------------------------------------------------
consensus_5540#0 CATAGTTTGTAATTATGATGGTAAAGAGCTACCCAAAGTTCTTGGGATGAATTCGGTTGA 1320
consensus_5540#1 ------------------------------------------------------------
consensus_5540#0 CAGAGTTCTTTTGGATGCGCCCTGCACAGGCACAGGGACCATTTGGAAGGACCCACAAAT 1380
consensus_5540#1 ------------------------------------------------------------
consensus_5540#0 TAAAACATCGAAGGGCATTGAGGACATCAGAGACTGCGCTTTTGTACAAAAGCAACTCCT 1440
consensus_5540#1 ------------------------------------------------------------
consensus_5540#0 GTTAGCAGCTATTAATTTGGTTGATGCCAACTCCAAAACTGGCGGTTACATTGTTTACTC 1500
consensus_5540#1 ------------------------------------------------------------
consensus_5540#0 AACCTGTTCGTTGATGATTCCGGA 1524
consensus_5540#1 ------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||