These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5540#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1524 fasta sequence [GGTTTTAGGGTTTTTTTTTTCCCTTCTCCTCCCCATTCGCCGGCAAGCCTCCGCTCCCACGCGGCGACGGTCTCCTCCCATGGCGAAGAAGGGCGCGCCACGCAGGCAGCAGCCGGCGCCGGCGGCGCGGCAACTGGCCGTGGCGAAGAAGGGGAAGGCCCCCCCGAAGGCGGCGAAGAGGGCGCCGAAGAAGAAGCAGGAGCTGCTCGAGCCGTCCTCCGACGACTCCGAGCTGGAGCAGCAGCAGGAGCGGCTCCAGGAGGTGGAGGAGGATGAGTCAGGGTCGGACCTCGACGCCCCCCCGGACTCCGGCGCCGAGGAGCTCTCCGACTCCGACGATGCCTCCTTGGAGGGAGGAGACAGCGGCGACGAGGAGGACGATGACGAGGAGGAGGAGGAAGATGACGACGACCCCCTCGCTGACGACTTCCTCGCTGGAAGTAGTGACGACGAAAGTGCCGAAGGAGATGACTCCGGAGTGGATTCAGATGAGTCTGACGACCTTGAGGCTAAGTCACGAGCAATTGATGAAGCGAAGGGGAAGGCAGAAGAAGAAGCTGAGGAGGAACTCAAACTCAATATTAGATCAGAATCTGATGAGTTCCGATTGCCTACAAAGGAGGAGTTGGAGGAAGAGGCACTTAGACCACCAAACCTGCCACATCTTAAAAGGAGGATATCAGAAATTGTCCGGGTACTCTCAAACTTTAGTAAGCTAAGGCAAAAAGATGTGCCGCGAAAGGATTATGTCGATCAACTCAAGACTGATGTAATGTCATACTATGGATACAATGATTTTCTTGTTGAAGCATTTATTGAGATGTTCCCAGCTGTTGAGCTTGTTGAGCTACTGGAATCTTTTGAGAAAAGACCACCTGAGTGCTTGCGGACGAATACATTGAAGACCCGGAGAAGGGATCTTGCTGCTGCTCTTATACCAAGAGGATTTAATCTGGATCCGATAGGGAAGTGGTCAAAGGTTGGTCTGGTTGTATATGACTCCACCATTTCAGCTGGTGCCACTGTTGAATATATGGCTGGGCATTATATGAAACAAGGTGCAAGTTCTTTCTTGCCTGTGATGGCTCTTGCTCCTCAGGAGAAGGAGCGAATTGTTGATATGGCGGCTGCCCCAGGTGGCAAGACTACATATATTGGAGCTCTTATGAAGAATACTGGAATAATTTATGCAAATGAGTTCAATGAGAAAAGGTTGCATGGACTTTTGGGCAACATACATCGCATGGGTGTTACCAATACCATAGTTTGTAATTATGATGGTAAAGAGCTACCCAAAGTTCTTGGGATGAATTCGGTTGACAGAGTTCTTTTGGATGCGCCCTGCACAGGCACAGGGACCATTTGGAAGGACCCACAAATTAAAACATCGAAGGGCATTGAGGACATCAGAGACTGCGCTTTTGTACAAAAGCAACTCCTGTTAGCAGCTATTAATTTGGTTGATGCCAACTCCAAAACTGGCGGTTACATTGTTTACTCAACCTGTTCGTTGATGATTCCGGA] [+] EMBL AK066732 [GGTTTTAGGGTTTTTTTTTTCCCTTCTCCTCCCCATTCGCCGGCAAGCCTCCGCTCCCACGCGGCGACGGTCTCCTCCCATGGCGAAGAAGGGCGCGCCACGCAGGCAGCAGCCGGCGCCGGCGGCGCGGCAACTGGCCGTGGCGAAGAAGGGGAAGGCCCCCCCGAAGGCGGCGAAGAGGGCGCCGAAGAAGAAGCAGGAGCTGCTCGAGCCGTCCTCCGACGACTCCGAGCTGGAGCAGCAGCAGGAGCGGCTCCAGGAGGTGGAGGAGGATGAGTCAGGGTCGGACCTCGACGCCCCCCCGGACTCCGGCGCCGAGGAGCTCTCCGACTCCGACGATGCCTCCTTGGAGGGAGGAGACAGCGGCGACGAGGAGGACGATGACGAGGAGGAGGAGGAAGATGACGACGACCCCCTCGCTGACGACTTCCTCGCTGGAAGTAGTGACGACGAAAGTGCCGAAGGAGATGACTCCGGAGTGGATTCAGATGAGTCTGACGACCTTGAGGCTAAGTCACGAGCAATTGATGAAGCGAAGGGGAAGGCAGAAGAAGAAGCTGAGGAGGAACTCAAACTCAATATTAGATCAGAATCTGATGAGTTCCGATTGCCTACAAAGGAGGAGTTGGAGGAAGAGGCACTTAGACCACCAAACCTGCCACATCTTAAAAGGAGGATATCAGAAATTGTCCGGGTACTCTCAAACTTTAGTAAGCTAAGGCAAAAAGATGTGCCGCGAAAGGATTATGTCGATCAACTCAAGACTGATGTAATGTCATACTATGGATACAATGATTTTCTTGTTGAAGCATTTATTGAGATGTTCCCAGCTGTTGAGCTTGTTGAGCTACTGGAATCTTTTGAGAAAAGACCACCTGAGTGCTTGCGGACGAATACATTGAAGACCCGGAGAAGGGATCTTGCTGCTGCTCTTATACCAAGAGGATTTAATCTGGATCCGATAGGGAAGTGGTCAAAGGTTGGTCTGGTTGTATATGACTCCACCATTTCAGCTGGTGCCACTGTTGAATATATGGCTGGGCATTATATGAAACAAGGTGCAAGTTCTTTCTTGCCTGTGATGGCTCTTGCTCCTCAGGAGAAGGAGCGAATTGTTGATATGGCGGCTGCCCCAGGTGGCAAGACTACATATATTGGAGCTCTTATGAAGAATACTGGAATAATTTATGCAAATGAGTTCAATGAGAAAAGGTTGCATGGACTTTTGGGCAACATACATCGCATGGGTGTTACCAATACCATAGTTTGTAATTATGATGGTAAAGAGCTACCCAAAGTTCTTGGGATGAATTCGGTTGACAGAGTTCTTTTGGATGCGCCCTGCACAGGCACAGGGACCATTTGGAAGGACCCACAAATTAAAACATCGAAGGGCATTGAGGACATCAGAGACTGCGCTTTTGTACAAAAGCAACTCCTGTTAGCAGCTATTAATTTGGTTGATGCCAACTCCAAAACTGGCGGTTACATTGTTTACTCAACCTGTTCGTTGATGATTCCGGA] [+] EMBL AK073242 [ GTTTTAGGGTTTTTTTTTTCCCTTCTCCTCCCCATTCGCCGGCAAGCCTCCGCTCCCACGCGGCGGCGGTCTCCTCCCATGGCGAAGAAGGGCGCGCCACGCAGGCAGCAGCCGGCGCCGGCGGCGCGGCAACTGGCCGTGGCGAAGAAGGGGAAGGCCCCCCCGAAGGCGGCGAAGAGGGCGCCGAAGAAGAAGCAGGAGCTGCTCGAGCCGTCCTCCGACGACTCCGAGCTGGAGCAGCAGCAGGAGCGGCTCCAGGAGGTGGAGGAGGATGAGTCAGGGTCGGACCTCGACGCCCCCTCGGACTCCGGCGCCGAGGAGCTCTCCGACTCCGACGATGCCTCCTTGGAGGGAGGAGACAGCGGCGACGAGGAGGACGATGACGAGGAGGAGGAGGAAGATGACGACGACCCCCTCGCTGACGACTTCCTCGCTGGAAGTAGTGACGACGAAAGTGCCGAAGGAGATGACTCCGGAGTGGATTCAGATGAGTCTGACGACCTTGAGGCTAAGTCACGAGCAATTGATGAAGCGAAGGGGAAGGCAGAAGAAGAAGCTGAGGAGGAACTCAAACTCAATATTAGATCAGAATCTGATGAGTTCCGATTGCCTACAAAGGAGGAGTTGGAGGAATAGGCACTTAGACCACCAAACCTGCCACATCTTAAAAGGAGGATATCAGAAATTGTCCGGGTACTCTCAAACTTTAGTAAGCTAAGGCAAAAAGATGTGCCGCGAAAGGATTATGTCGATCAACTCAAGACTGATGTAATGTCATACTATGGATACAATGATTTTCTTGTTGAAGCATTTATTGAGATGTTCCCAGCTGTTGAGCTTGTTGAGCTACTGGAATCTTTTGAGAAAAGACCACCTGAGTGCTTGCGGACGAATACATTGAAGACCCGGAGAAGGGATCTTGCTGCTGCTCTTATACCAAGAGGATTTAATCTGGATCCGATAGGGAAGTGGTCAAAGGTTGGTCTGGTTGTATATGACTCCACCATTTCAGCTGGTGCCACTGTTGAATATATGGCTGGGCATTATATGAAACAAGGTGCAAGTTCTTTCTTGCCTGTGATGGCTCTTGCTCCTCAGGAGAAGGAGCGAATTGTTGATATGGCGGCTGCCCCAGGTGGCAAGACTACATATATTGGAGCTCTTATGAAGAATACTGGAATAATTTATGCAAATGAGTTCAATGAGAAAAGGTTGCATGGACTTTTGGGCAACATACATCGCATGGGTGTTACCAATACAATAGTTTGTAATTATGATGGTAAAGAGCTACCCAAAGTTCTTGGGATGAATTCGGTTGACAGAGTTCTTTTGGATGCGCCCTGCACAGGCACAGGGACCATTTGGAAGGACCCACAAATTAAAACATCGAAGGGCATTGAGGACATCAGAGACTGCGCTTTTGTACAAAAGCAACTCCTGTTAGCAGCTATTGATTTGGTTGATGCCAACTCCAAAACTGGCGGTTACATTGTTTACTCAACCTGTTCGTTGATGATTCCGGA] consensusID : consensus_5540#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence [ATGAGGATGGCGACGACGACCCCCTCGCTGACGACTTCCTCGCCGGCAGTGACGACGAAAGTGACGGAGGAGACGACTCTGGTGTGGACTCAGATGAGTCTGATGACTTAGAGGCGAAGTCGCGAGCGATTGATGAAGAGAAAGAGAAGGCAGAAGAAGAGGCTGAGGAGGAGCTCAAGCTCAATATTAGATCAGAATCTGATGAGTTCCGATTGCCCACAAAGGAGGAGTTGGAGGAAGAGGCACTTCGACCACCAAACCTGCCGAATCTTAAAAGGAGGATATCAGAAATTGTCCGGGTACTCTCAAACTTTAGTAAGCTGAGGCAAAAAGATGTGCCGCGAAAGGATTATGTCAATCAGCTGAAGACAGATATAATGTCATACTATGGATACAATGATTTTCTCGTTGAAGCATTTATTGAGATGTTCCCAGCTGTGGAGCTTGTTGAACTACTGGAATCTTTTGAGAAAAGACCGCCTGAATGCTTACGAACAAATACATTGAAGACCCGGAGAAGGGATCTTGCTGCTGCTCTTATACCAAGAGGATTTAATCTGGATCCGATAGGGAAGTGGTCAAAGGTAGGCCTTGTTGTATACGACTCCACCATTTCAGCTGGTGCCACTGTTGAATATATGGGCTGG] [+] EMBL CF306237 [ATGAGGATGGCGACGACGACCCCCTCGCTGACGACTTCCTCGCCGGCAGTGACGACGAAAGTGACGGAGGAGACGACTCTGGTGTGGACTCAGATGAGTCTGATGACTTAGAGGCGAAGTCGCGAGCGATTGATGAAGAGAAAGAGAAGGCAGAAGAAGAGGCTGAGGAGGAGCTCAAGCTCAATATTAGATCAGAATCTGATGAGTTCCGATTGCCCACAAAGGAGGAGTTGGAGGAAGAGGCACTTCGACCACCAAACCTGCCGAATCTTAAAAGGAGGATATCAGAAATTGTCCGGGTACTCTCAAACTTTAGTAAGCTGAGGCAAAAAGATGTGCCGCGAAAGGATTATGTCAATCAGCTGAAGACAGATATAATGTCATACTATGGATACAATGATTTTCTCGTTGAAGCATTTATTGAGATGTTCCCAGCTGTGGAGCTTGTTGAACTACTGGAATCTTTTGAGAAAAGACCGCCTGAATGCTTACGAACAAATACATTGAAGACCCGGAGAAGGGATCTTGCTGCTGCTCTTATACCAAGAGGATTTAATCTGGATCCGATAGGGAAGTGGTCAAAGGTAGGCCTTGTTGTATACGACTCCACCATTTCAGCTGGTGCCACTGTTGAATATATGGGCTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5540#0 GGTTTTAGGGTTTTTTTTTTCCCTTCTCCTCCCCATTCGCCGGCAAGCCTCCGCTCCCAC 60 consensus_5540#1 ------------------------------------------------------------ consensus_5540#0 GCGGCGACGGTCTCCTCCCATGGCGAAGAAGGGCGCGCCACGCAGGCAGCAGCCGGCGCC 120 consensus_5540#1 ------------------------------------------------------------ consensus_5540#0 GGCGGCGCGGCAACTGGCCGTGGCGAAGAAGGGGAAGGCCCCCCCGAAGGCGGCGAAGAG 180 consensus_5540#1 ------------------------------------------------------------ consensus_5540#0 GGCGCCGAAGAAGAAGCAGGAGCTGCTCGAGCCGTCCTCCGACGACTCCGAGCTGGAGCA 240 consensus_5540#1 ------------------------------------------------------------ consensus_5540#0 GCAGCAGGAGCGGCTCCAGGAGGTGGAGGAGGATGAGTCAGGGTCGGACCTCGACGCCCC 300 consensus_5540#1 ------------------------------------------------------------ consensus_5540#0 CCCGGACTCCGGCGCCGAGGAGCTCTCCGACTCCGACGATGCCTCCTTGGAGGGAGGAGA 360 consensus_5540#1 ------------------------------------------------------------ consensus_5540#0 CAGCGGCGACGAGGAGGACGATGACGAGGAGGAGGAGGAAGATGACGACGACCCCCTCGC 420 consensus_5540#1 --------------------------------ATGAGGATGGCGACGACGACCCCCTCGC 28 * ***** * ***************** consensus_5540#0 TGACGACTTCCTCGCTGGAAGTAGTGACGACGAAAGTGCCGAAGGAGATGACTCCGGAGT 480 consensus_5540#1 TGACGACTTCCTCGCCG---GCAGTGACGACGAAAGTGACGGAGGAGACGACTCTGGTGT 85 *************** * * **************** ** ****** ***** ** ** consensus_5540#0 GGATTCAGATGAGTCTGACGACCTTGAGGCTAAGTCACGAGCAATTGATGAAGCGAAGGG 540 consensus_5540#1 GGACTCAGATGAGTCTGATGACTTAGAGGCGAAGTCGCGAGCGATTGATGAAGAGAAAGA 145 *** ************** *** * ***** ***** ***** ********** *** * consensus_5540#0 GAAGGCAGAAGAAGAAGCTGAGGAGGAACTCAAACTCAATATTAGATCAGAATCTGATGA 600 consensus_5540#1 GAAGGCAGAAGAAGAGGCTGAGGAGGAGCTCAAGCTCAATATTAGATCAGAATCTGATGA 205 *************** *********** ***** ************************** consensus_5540#0 GTTCCGATTGCCTACAAAGGAGGAGTTGGAGGAAGAGGCACTTAGACCACCAAACCTGCC 660 consensus_5540#1 GTTCCGATTGCCCACAAAGGAGGAGTTGGAGGAAGAGGCACTTCGACCACCAAACCTGCC 265 ************ ****************************** **************** consensus_5540#0 ACATCTTAAAAGGAGGATATCAGAAATTGTCCGGGTACTCTCAAACTTTAGTAAGCTAAG 720 consensus_5540#1 GAATCTTAAAAGGAGGATATCAGAAATTGTCCGGGTACTCTCAAACTTTAGTAAGCTGAG 325 ******************************************************* ** consensus_5540#0 GCAAAAAGATGTGCCGCGAAAGGATTATGTCGATCAACTCAAGACTGATGTAATGTCATA 780 consensus_5540#1 GCAAAAAGATGTGCCGCGAAAGGATTATGTCAATCAGCTGAAGACAGATATAATGTCATA 385 ******************************* **** ** ***** *** ********** consensus_5540#0 CTATGGATACAATGATTTTCTTGTTGAAGCATTTATTGAGATGTTCCCAGCTGTTGAGCT 840 consensus_5540#1 CTATGGATACAATGATTTTCTCGTTGAAGCATTTATTGAGATGTTCCCAGCTGTGGAGCT 445 ********************* ******************************** ***** consensus_5540#0 TGTTGAGCTACTGGAATCTTTTGAGAAAAGACCACCTGAGTGCTTGCGGACGAATACATT 900 consensus_5540#1 TGTTGAACTACTGGAATCTTTTGAGAAAAGACCGCCTGAATGCTTACGAACAAATACATT 505 ****** ************************** ***** ***** ** ** ******** consensus_5540#0 GAAGACCCGGAGAAGGGATCTTGCTGCTGCTCTTATACCAAGAGGATTTAATCTGGATCC 960 consensus_5540#1 GAAGACCCGGAGAAGGGATCTTGCTGCTGCTCTTATACCAAGAGGATTTAATCTGGATCC 565 ************************************************************ consensus_5540#0 GATAGGGAAGTGGTCAAAGGTTGGTCTGGTTGTATATGACTCCACCATTTCAGCTGGTGC 1020 consensus_5540#1 GATAGGGAAGTGGTCAAAGGTAGGCCTTGTTGTATACGACTCCACCATTTCAGCTGGTGC 625 ********************* ** ** ******** *********************** consensus_5540#0 CACTGTTGAATATATGGCTGGGCATTATATGAAACAAGGTGCAAGTTCTTTCTTGCCTGT 1080 consensus_5540#1 CACTGTTGAATATATGGGCTGG-------------------------------------- 647 ***************** ** consensus_5540#0 GATGGCTCTTGCTCCTCAGGAGAAGGAGCGAATTGTTGATATGGCGGCTGCCCCAGGTGG 1140 consensus_5540#1 ------------------------------------------------------------ consensus_5540#0 CAAGACTACATATATTGGAGCTCTTATGAAGAATACTGGAATAATTTATGCAAATGAGTT 1200 consensus_5540#1 ------------------------------------------------------------ consensus_5540#0 CAATGAGAAAAGGTTGCATGGACTTTTGGGCAACATACATCGCATGGGTGTTACCAATAC 1260 consensus_5540#1 ------------------------------------------------------------ consensus_5540#0 CATAGTTTGTAATTATGATGGTAAAGAGCTACCCAAAGTTCTTGGGATGAATTCGGTTGA 1320 consensus_5540#1 ------------------------------------------------------------ consensus_5540#0 CAGAGTTCTTTTGGATGCGCCCTGCACAGGCACAGGGACCATTTGGAAGGACCCACAAAT 1380 consensus_5540#1 ------------------------------------------------------------ consensus_5540#0 TAAAACATCGAAGGGCATTGAGGACATCAGAGACTGCGCTTTTGTACAAAAGCAACTCCT 1440 consensus_5540#1 ------------------------------------------------------------ consensus_5540#0 GTTAGCAGCTATTAATTTGGTTGATGCCAACTCCAAAACTGGCGGTTACATTGTTTACTC 1500 consensus_5540#1 ------------------------------------------------------------ consensus_5540#0 AACCTGTTCGTTGATGATTCCGGA 1524 consensus_5540#1 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||