|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5543#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 799 fasta sequence
[CGAGACAAGGGGGATACAACATTNTTCTTTGTGAGAGGTGAGCAGAACAAACAGAGGAGTGTATTCG-TGCGGTTCTCAGTCCAGACTTTCAGAGGGGTGTATTCCTTGCGGTCTCAATCTAGACTTCAGAGGGGTGTATTCCTCAGTCTCAGTCCAGACTTCAGATTTATGGATGGCAGAAATGTTACTGCTTGTTTCCTCGTATTACTTGTGTTTCTTGGGAACTCGAATATTGCAGCAGCTGAATGCTGGGAAACTACTTCGAGTAGTCCGATCTGCGTAGGCTTTCTGTGCAAGGGGACGTGTTGGATTGGTGCAAAAATCTGGAAAGCCAAGGTCAAGGTTCACAAGTGTATGGGATCAACACTGAGCAGCAGCTGTTACTGTTACTATTGTGACAATAAGCCCTGAAGATAGATTATTGCCTGCAACTATTGAAAGGAAATCAAAGATTTATTCGTTGCTTTTTTAGCTAAGGAAAGAATAACTAAAACCTGGAATTTAGTAAGATAATTAGTTTTCTAGTTTATGAAATTGTTCTTCTTAATTTTCCTAGATTTTATTAGTAGTAATATTTAGTCACTTACTTCAATTAATGGTGTTTATTGTATTTATGTATCCTCCTGTATTTTTGAAGCTTGCACTTACTATGGTGAAATGAT-GAATTTTACAGGCGTAACAAAAAAAAATATTTANTTTAGAGTAGTATGAACATCTACGGCGGCATCCTATTCATGATACTGGAAANTTTATGGCNTTGGNTCAATTAGATCAACATTCTGGAAAAAAAAAAAAAAAA]
[-] EMBL CA759130 [CGAGACAAGGGGGATACAACATTNTTCTTTGTGAGAGGTGAGCAGAACAAACAGAGGAGTGTATTCG TGCGGTTCTCAGTCCAGACTTTCAGAGGGGTGTATTCCTTGCGGTCTCAATCTAGACTTCAGAGGGGTGTATTCCTCAGTCTCAGTCCAGACTTCAGATTTATGGATGGCAGAAATGTTACTGCTTGTTTCCTCGTATTACTTGTGTTTCTTGGGAACTCGAATATTGCAGCAGCTGAATGCTGGGAAACTACTTCGAGTAGTCCGATCTGCGTAGGCTTTCTGTGCAAGGGGACGTGTTGGATTGGTGCAAAAATCTGGAAAGCCAAGGTCAAGGTTCACAAGTGTATGGGATCAACACTGAGCAGCAGCTGTTACTGTTACTATTGTGACAATAAGCCCTGAAGATAGATTATTGCCTGCAACTATTGAAAGGAAATCAAAGATTTATTCGTTGCTTTTTTAGCTAAGGAAAGAATAACTAAAACCTGGAATTTAGTAAGATAATTAGTTTTCTAGTTTATGAAATTGTTCTTCTTAATTTTCCTAGATTTTATTAGTAGTAATATTTAGTCACTTACTTCAATTAATGGTGTTTATTGTATTTATGTATCCTCCTGTATTTTTGAAGCTTGCACTTACTATGGTGAAATGAT GAATTTTACAGGCGTAACAAAAAAAAA ]
[+] EMBL CB097071 [ tTTCTTTGTGAGAGGTGAGCAGAACAAACAGAGGAGTGTATTCGTTGCGG TCTCAGTCCAGACTTTCAGAGGGGTGTATTCCTTGCGGTCTCAATCTAGACTTCAGAGGGGTGTATTCCTCAGTCTCAGTCCAGACTTCAGATTTATGGATGGCAGAAATGTTACTGCTTGTTTCCTCGTATTACTTGTGTTTCTTGGGAACTCGAATATTGCAGCAGCTGAATGCTGGGAAACTACTTCGAGTAGTCCGATCTGCGTAGGCTTTCTGTGCAAGGGGACGTGTTGGATTGGTGCAAAAATCTGGAAAGCCAAGGTCAAGGTTCACAAGTGTATGGGATCAACACTGAGCAGCAGCTGTTACTGTTACTATTGTGACAATAAGCCCTGAAGATAGATTATTGCCTGCAACTATTGAAAGGAAATCAAAGATTTATTCGTTGCTTTTTTAGCTAAGGAAAGAATAACTAAAACCTGGAATTTAGTAAGATAATTAGTTTTCTAGTTTATGAAATTGTTCTTCTTAATTTTCCTAGATTTTATTAGTAGTAATATTTAGTCACTTACTTCAATTAATGGNGGTTATTGNATTTATGNATCCTCCTGNATTTTTGAAGCTTGCACTTACTATGGTGAAATGATGGGATTTTACAGGCGTAAAAATTGGCTATATTTANTTTAGAGTAGTATGAACATCTACGGCGGCATCCTATTCATGATACTGGAAANTTTATGGCNTTGGNTCAATTAGATCAACATTCTGGAAAAAAAAAAAAAAAA]
consensusID : consensus_5543#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence
[CACGCAAGGGGGTGACAGCTGCATAGACCAAACAAAGAAGGGTTTTTCGTGGCGGTCTCCGTCCCAGACCTTTAAACGGGGTGTATTCCCTCGGGTCTCAATCTGGATTTTAAAGGGGGGTTTTCCTCAGTTTCAGTCCGGCGTTGAAATTTATGGATGGCAGAAATGTTACTCCTCGTTTCCTGGTATTACTTGTGTTTCTTGGGAACTCGAATATTGCAGCAGCTAGATGCTGGGAAACTACTTCGAGTAGTCCCATCTGCGTAGGCTTTCTGTGCAAGGGGACGTGTTGGATTGGTGCAAAAATCTGGAAAGCCAAGGTCAAGGTTCACAAGTGTATGGGATCAACCTTGAGCAGCAGCTGTTACTGTTACTATTGTGACAATAAGCCCTGAAGATAGATTATTGCCTGCAACTATTGAAAGGAAATCAAAGATTTTTTCGTTGCTTTTTTAGCTAAGGAAAGAATAACTAAAACCTGGAATTTAGTAAGATAATTAGTTTTCTAGTTTATGAAATTGTTTTTCTTAATTTTCCTAGATTTTATTAGTAGTAATATTTAGTCCCTTACTTCAATTAATGGTGTTTATTGTATTTATGTATCCTCCTGTATTTTTGAAGCTTGCCCTTACTATGGTGAAATGATGGATTTTCCCGGCGTAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA760767 [CACGCAAGGGGGTGACAGCTGCATAGACCAAACAAAGAAGGGTTTTTCGTGGCGGTCTCCGTCCCAGACCTTTAAACGGGGTGTATTCCCTCGGGTCTCAATCTGGATTTTAAAGGGGGGTTTTCCTCAGTTTCAGTCCGGCGTTGAAATTTATGGATGGCAGAAATGTTACTCCTCGTTTCCTGGTATTACTTGTGTTTCTTGGGAACTCGAATATTGCAGCAGCTAGATGCTGGGAAACTACTTCGAGTAGTCCCATCTGCGTAGGCTTTCTGTGCAAGGGGACGTGTTGGATTGGTGCAAAAATCTGGAAAGCCAAGGTCAAGGTTCACAAGTGTATGGGATCAACCTTGAGCAGCAGCTGTTACTGTTACTATTGTGACAATAAGCCCTGAAGATAGATTATTGCCTGCAACTATTGAAAGGAAATCAAAGATTTTTTCGTTGCTTTTTTAGCTAAGGAAAGAATAACTAAAACCTGGAATTTAGTAAGATAATTAGTTTTCTAGTTTATGAAATTGTTTTTCTTAATTTTCCTAGATTTTATTAGTAGTAATATTTAGTCCCTTACTTCAATTAATGGTGTTTATTGTATTTATGTATCCTCCTGTATTTTTGAAGCTTGCCCTTACTATGGTGAAATGATGGATTTTCCCGGCGTAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5543#0 CGAGACAAGGGGGATACAACATTNTTCTTTGTGAGAGGTGAGCAGAACAAACAGAGGAGT 60
consensus_5543#1 -------------------CACGCAAGGGGGTGACAGCTGCATAGACCAAACAAAGAAGG 41
** **** ** ** *** ****** ** **
consensus_5543#0 GTATT-CGTG-CGGTTCTCAGTCCAGACTTTCAGA-GGGGTGTATTCCTTGCGGTCTCAA 117
consensus_5543#1 GTTTTTCGTGGCGGTCTCCGTCCCAGACCTTTAAACGGGGTGTATTCCCTCGGGTCTCAA 101
** ** **** **** * ****** ** * * ************ * ********
consensus_5543#0 TCTAGACTTCAGAGGGGTGTATTCCTCAGTCTCAGTCCAGACTTCAGATTTATGGATGGC 177
consensus_5543#1 TCTGGATTTTAAAGGGGGGTTTTCCTCAGTTTCAGTCCGGCGTTGAAATTTATGGATGGC 161
*** ** ** * ***** ** ********* ******* * ** * *************
consensus_5543#0 AGAAATGTTACTGCTTGTTTCCTCGTATTACTTGTGTTTCTTGGGAACTCGAATATTGCA 237
consensus_5543#1 AGAAATGTTACTCCTCGTTTCCTGGTATTACTTGTGTTTCTTGGGAACTCGAATATTGCA 221
************ ** ******* ************************************
consensus_5543#0 GCAGCTGAATGCTGGGAAACTACTTCGAGTAGTCCGATCTGCGTAGGCTTTCTGTGCAAG 297
consensus_5543#1 GCAGCTAGATGCTGGGAAACTACTTCGAGTAGTCCCATCTGCGTAGGCTTTCTGTGCAAG 281
****** *************************** ************************
consensus_5543#0 GGGACGTGTTGGATTGGTGCAAAAATCTGGAAAGCCAAGGTCAAGGTTCACAAGTGTATG 357
consensus_5543#1 GGGACGTGTTGGATTGGTGCAAAAATCTGGAAAGCCAAGGTCAAGGTTCACAAGTGTATG 341
************************************************************
consensus_5543#0 GGATCAACACTGAGCAGCAGCTGTTACTGTTACTATTGTGACAATAAGCCCTGAAGATAG 417
consensus_5543#1 GGATCAACCTTGAGCAGCAGCTGTTACTGTTACTATTGTGACAATAAGCCCTGAAGATAG 401
******** **************************************************
consensus_5543#0 ATTATTGCCTGCAACTATTGAAAGGAAATCAAAGATTTATTCGTTGCTTTTTTAGCTAAG 477
consensus_5543#1 ATTATTGCCTGCAACTATTGAAAGGAAATCAAAGATTTTTTCGTTGCTTTTTTAGCTAAG 461
************************************** *********************
consensus_5543#0 GAAAGAATAACTAAAACCTGGAATTTAGTAAGATAATTAGTTTTCTAGTTTATGAAATTG 537
consensus_5543#1 GAAAGAATAACTAAAACCTGGAATTTAGTAAGATAATTAGTTTTCTAGTTTATGAAATTG 521
************************************************************
consensus_5543#0 TTCTTCTTAATTTTCCTAGATTTTATTAGTAGTAATATTTAGTCACTTACTTCAATTAAT 597
consensus_5543#1 TTTTTCTTAATTTTCCTAGATTTTATTAGTAGTAATATTTAGTCCCTTACTTCAATTAAT 581
** ***************************************** ***************
consensus_5543#0 GGTGTTTATTGTATTTATGTATCCTCCTGTATTTTTGAAGCTTGCACTTACTATGGTGAA 657
consensus_5543#1 GGTGTTTATTGTATTTATGTATCCTCCTGTATTTTTGAAGCTTGCCCTTACTATGGTGAA 641
********************************************* **************
consensus_5543#0 ATGATGAATTTTACAGGCGTAACAAAAAAAAATATTTANTTTAGAGTAGTATGAACATCT 717
consensus_5543#1 ATGATGGATTTTCCCGGCGTAAAAAAAAAAAAAAAAAAA--------------------- 680
****** ***** * ******* ********* * *
consensus_5543#0 ACGGCGGCATCCTATTCATGATACTGGAAANTTTATGGCNTTGGNTCAATTAGATCAACA 777
consensus_5543#1 ------------------------------------------------------------
consensus_5543#0 TTCTGGAAAAAAAAAAAAAAAA 799
consensus_5543#1 ----------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||