These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5547#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 990 fasta sequence [AAATTCTCCGGTCACGCCGGCTCTCTCCCCTCCTCTCTCCGCCAGCGCCGGCTCCCCTCCTCCCTCCACCGGCGACGGCTCTCCTCTCCTCCGGCGAAGGACGGCGACGAACTTGGAGAAGCGGGGCAGAGCGCGGGGCGGGAGATGGCGACAAGTTCGGTGGCGGCGGCGCGAGATCTCACCGGCCCCTCCACTTCTGGCCAGTGACGAGGGCGCGGAGGGCTGCGGCGGCGCGAGGGCTCACCGGGCCCCTCCACCCCCGGCAGTGTCTCGACGACGGATCTGGCGTCGGGCGAGCGGCATCCTCGGGGCCTAGCGAACAAACGGCGGCGGCGCGTCCTCGCCCCGCCCTCCTCACCAGCGGCGGCGCCCTCCTTAGCCTCCACCGGAGCTCGACGGCGCCGCCCGAACCTTGCCAGGCGTGGATCTGGCCTAGAGCTTGACGGCGCCGCTCGGACCTCGCCCGGCGCGGGGTGGCGCCGCCGGACATGGAGCTCTGGCGGCGGCGGAAGAATCCGAGCTCGGCATGGCATCCTCCTCCCCCGGCTTTGTTTCAACTTTTTCAGAATCCGAGCTCTGCACATGTGTTTGTTTCAGCTTTTTGAAGCGTTTGTTTCAGCCTTTTCAAGCGAGTTCCTTGCATCCTTGTTAAGGGACGAAAGCCTCAGCGAAGGAACGAGGGCCCACATCCTCTCTCCTCAACAACATCACACAACCTATGTGTAGGGGTGAAGCAACCCGCCACGGTGGTGCACTGTGAAGGGTAGAGTGGAGCTGTTGCATGCTCCGCTCTTAGAAATTAGATTACGACTTTACGAGTATAAAGCTCCGCATCATCCTCAAAGCAGGCGCCGGGAGGTATACCAAACAGGTCTTAATCATTCGTTTTAGTTGGAACTGGAAGTGCATGGTTTGGACCATGCTAATGTCTCTGGCAATATTGCTCTGCAACAATTAACCAATGATGATGTTCATCTTTGTACTGAACTC] [+] EMBL AK063018 [AAATTCTCCGGTCACGCCGGCTCTCTCCCCTCCTCTCTCCGCCAGCGCCGGCTCCCCTCCTCCCTCCACCGGCGACGGCTCTCCTCTCCTCCGGCGAAGGACGGCGACGAACTTGGAGAAGCGGGGCAGAGCGCGGGGCGGGAGATGGCGACAAGTTCGGTGGCGGCGGCGCGAGATCTCACCGGCCCCTCCACTTCTGGCCAGTGACGAGGGCGCGGAGGGCTGCGGCGGCGCGAGGGCTCACCGGGCCCCTCCACCCCCGGCAGTGTCTCGACGACGGATCTGGCGTCGGGCGAGCGGCATCCTCGGGGCCTAGCGAACAAACGGCGGCGGCGCGTCCTCGCCCCGCCCTCCTCACCAGCGGCGGCGCCCTCCTTAGCCTCCACCGGAGCTCGACGGCGCCGCCCGAACCTTGCCAGGCGTGGATCTGGCCTAGAGCTTGACGGCGCCGCTCGGACCTCGCCCGGCGCGGGGTGGCGCCGCCGGACATGGAGCTCTGGCGGCGGCGGAAGAATCCGAGCTCGGCATGGCATCCTCCTCCCCCGGCTTTGTTTCAACTTTTTCAGAATCCGAGCTCTGCACATGTGTTTGTTTCAGCTTTTTGAAGCGTTTGTTTCAGCCTTTTCAAGCGAGTTCCTTGCATCCTTGTTAAGGGACGAAAGCCTCAGCGAAGGAACGAGGGCCCACATCCTCTCTCCTCAACAACATCACACAACCTATGTGTAGGGGTGAAGCAACCCGCCACGGTGGTGCACTGTGAAGGGTAGAGTGGAGCTGTTGCATGCTCCGCTCTTAGAAATTAGATTACGACTTTACGAGTATAAAGCTCCGCATCATCCTCAAAGCAGGCGCCGGGAGGTATACCAAACAGGTCTTAATCATTCGTTTTAGTTGGAACTGGAAGTGCATGGTTTGGACCATGCTAATGTCTCTGGCAATATTGCTCTGCAACAATTAACCAATGATGATGTTCATCTTTGTACTGAACTC] consensusID : consensus_5547#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 976 fasta sequence [CCTCACGTGTTTATCAATTTACAAAGAAGTCCAAATTTTACAGTAACCACCCTAAAATCGAGAGAAGAATATAAATCTCCACCCATACTACTTTACCCAAATCCCCCAACTACTCCTCCCTCACGGTCACGCCGGCTCTCTCCCCTCCTCTCTCCGCCGGCGCTGGCTCCCCTCCTCTCCTCCGCCGGCGCCGGCTCTCCTCTCCTCCAGCGAAGGACGGCGACGAACTCGACGAAGCGGGTTAGAGCGCGGGGCGGGAGACGGCGACGCGGGGGCACAGGAGTGGGAGATGGTGACGAGTTCGGCGGCGGCGGCGCGAGATCTCACCGGCCCCTCCACTTCTGGCCGGCGATGAGGGCGCGGAGGGCTGCGGCGACGCGAGGGCTCACCGGGCCCCTCCACCCCCGGCAGTGTCTCGACGACGGATCCGGCGTCGGGCGAGCGGCATCCTCGGGGCTTGGCGTAGAAGCAACGGTGGGAAGACGGCGGCGACAGCGCTCCTTCGAGGTGGTGGCGGCGGCGTGGATCTGAAGCGGTGCGGGAGCTTAGCCTCCACCGGAGCTCGACGGCGCCGCCCGAACCTTGTCCGGCGTGGATCCGGCCTAGAGCTCGATGGCGCCGCCCGGACCTCGCCCGGCGCGGGGTGGCGCCGCCGGACATGGAGCTCTAGCGGCGGCGGAAGAATCCGAGCTCGGCATGGCATCCTTCTCCCCCGGCTTTGTTTCAACCTTTTCAGAATCGGAGCTCTTCACATGTGTTTATTTTAGCTTTTTGAAGTGTTTGTTTCAGCTTTTTCAAGCGAGTTCCTCGCGTCCTTGTTAAGGGACGAAAGCCTCAGCGAAGGAACGAGGGCCCACACCCTCTCTCCTCTACAACATCAAACAGCCTATGTGGAGGGGTGAAGCAACCCGCCATGTTGGTACACTGTGAAGGGCCTTAGAGGGACACTACTACATAACTCTAATTCAGTTCTGGT] [-] EMBL AK107782 [CCTCACGTGTTTATCAATTTACAAAGAAGTCCAAATTTTACAGTAACCACCCTAAAATCGAGAGAAGAATATAAATCTCCACCCATACTACTTTACCCAAATCCCCCAACTACTCCTCCCTCACGGTCACGCCGGCTCTCTCCCCTCCTCTCTCCGCCGGCGCTGGCTCCCCTCCTCTCCTCCGCCGGCGCCGGCTCTCCTCTCCTCCAGCGAAGGACGGCGACGAACTCGACGAAGCGGGTTAGAGCGCGGGGCGGGAGACGGCGACGCGGGGGCACAGGAGTGGGAGATGGTGACGAGTTCGGCGGCGGCGGCGCGAGATCTCACCGGCCCCTCCACTTCTGGCCGGCGATGAGGGCGCGGAGGGCTGCGGCGACGCGAGGGCTCACCGGGCCCCTCCACCCCCGGCAGTGTCTCGACGACGGATCCGGCGTCGGGCGAGCGGCATCCTCGGGGCTTGGCGTAGAAGCAACGGTGGGAAGACGGCGGCGACAGCGCTCCTTCGAGGTGGTGGCGGCGGCGTGGATCTGAAGCGGTGCGGGAGCTTAGCCTCCACCGGAGCTCGACGGCGCCGCCCGAACCTTGTCCGGCGTGGATCCGGCCTAGAGCTCGATGGCGCCGCCCGGACCTCGCCCGGCGCGGGGTGGCGCCGCCGGACATGGAGCTCTAGCGGCGGCGGAAGAATCCGAGCTCGGCATGGCATCCTTCTCCCCCGGCTTTGTTTCAACCTTTTCAGAATCGGAGCTCTTCACATGTGTTTATTTTAGCTTTTTGAAGT ] [+] EMBL AK063711 [ CCGGCTCTCTCCCCTCCTCTCTCCGCCGGCGCTGGCTCCCCTCCTCTCCTCCGCCGGCGCCGGCTCTCCTCTCCTCCAGCGAAGGACGGCGACGAACTCGACGAAGCGGGTTAGAGCGCGGGGCGGGAGACGGCGACGCGGGGGCACAGGAGTGGGAGATGGTGACGAGTTCGGCGGCGGCGGCGCGAGATCTCACCGGCCCCTCCACTTCTGGCCGGCGATGAGGGCGCGGAGGGCTGCGGCGACGCGAGGGCTCACCGGGCCCCTCCACCCCCGGCAGTGTCTCGACGACGGATCCGGCGTCGGGCGAGCGGCATCCTCGGGGCTTGGCGTAGAAGCAACGGTGGGAAGACGGCGGCGACAGCGCTCCTTCGAGGTGGTGGCGGCGGCGTGGATCTGAAGCGGTGCGGGAGCTTAGCCTCCACCGGAGCTCGACGGCGCCGCCCGAACCTTGTCCGGCGTGGATCCGGCCTAGAGCTCGATGGCGCCGCCCGGACCTCGCCCGGCGCGGGGTGGCGCCGCCGGACATGGAGCTCTAGCGGCGGCGGAAGAATCCGAGCTCGGCATGGCATCCTTCTCCCCCGGCTTTGTTTCAACCTTTTCAGAATCGGAGCTCTTCACATGTGTTTATTTTAGCTTTTTGAAGTGTTTGTTTCAGCTTTTTCAAGCGAGTTCCTCGCGTCCTTGTTAAGGGACGAAAGCCTCAGCGAAGGAACGAGGGCCCACACCCTCTCTCCTCTACAACATCAAACAGCCTATGTGGAGGGGTGAAGCAACCCGCCATGTTGGTACACTGTGAAGGGCCTTAGAGGGACACTACTACATAACTCTAATTCAGTTCTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5547#0 ------------------------------------------------------------ consensus_5547#1 CCTCACGTGTTTATCAATTTACAAAGAAGTCCAAATTTTACAGTAACCACCCTAAAATCG 60 consensus_5547#0 --------------------------------------------------AAATTCTCC- 9 consensus_5547#1 AGAGAAGAATATAAATCTCCACCCATACTACTTTACCCAAATCCCCCAACTACTCCTCCC 120 * * **** consensus_5547#0 ----GGTCACGCCGGCTCTCTCCCCTCCTCTCTCCGCCAGCGCCGGCTCCCCTCCTC-CC 64 consensus_5547#1 TCACGGTCACGCCGGCTCTCTCCCCTCCTCTCTCCGCCGGCGCTGGCTCCCCTCCTCTCC 180 ********************************** **** ************* ** consensus_5547#0 TCCACCGGCGACGGCTCTCCTCTCCTCCGGCGAAGGACGGCGACGAACTTGGAGAAGCGG 124 consensus_5547#1 TCCGCCGGCGCCGGCTCTCCTCTCCTCCAGCGAAGGACGGCGACGAACTCGACGAAGCGG 240 *** ****** ***************** ******************** * ******* consensus_5547#0 GGCAGAGCGCGGGGCGGGAGATGGCGACA-----------------------------AG 155 consensus_5547#1 GTTAGAGCGCGGGGCGGGAGACGGCGACGCGGGGGCACAGGAGTGGGAGATGGTGACGAG 300 * ****************** ****** ** consensus_5547#0 TTCGGTGGCGGCGGCGCGAGATCTCACCGGCCCCTCCACTTCTGGCCAGTGACGAGGGCG 215 consensus_5547#1 TTCGGCGGCGGCGGCGCGAGATCTCACCGGCCCCTCCACTTCTGGCCGGCGATGAGGGCG 360 ***** ***************************************** * ** ******* consensus_5547#0 CGGAGGGCTGCGGCGGCGCGAGGGCTCACCGGGCCCCTCCACCCCCGGCAGTGTCTCGAC 275 consensus_5547#1 CGGAGGGCTGCGGCGACGCGAGGGCTCACCGGGCCCCTCCACCCCCGGCAGTGTCTCGAC 420 *************** ******************************************** consensus_5547#0 GACGGATCTGGCGTCGGGCGAGCGGCATCCTCGGGGCCTAGCGAACAAACGGCGGCGGCG 335 consensus_5547#1 GACGGATCCGGCGTCGGGCGAGCGGCATCCTCGGGGCTTGGCGTAGAAGCAACGGTGGGA 480 ******** **************************** * *** * ** * *** ** consensus_5547#0 CGTCCTCGCC--CCGCCCTCCTCACCAGCGGCGGCGCCCTC------------------- 374 consensus_5547#1 AGACGGCGGCGACAGCGCTCCTTCGAGGTGGTGGCGGCGGCGTGGATCTGAAGCGGTGCG 540 * * ** * * ** ***** * ** **** * * consensus_5547#0 ----CTTAGCCTCCACCGGAGCTCGACGGCGCCGCCCGAACCTTGCCAGGCGTGGATCTG 430 consensus_5547#1 GGAGCTTAGCCTCCACCGGAGCTCGACGGCGCCGCCCGAACCTTGTCCGGCGTGGATCCG 600 ***************************************** * ********** * consensus_5547#0 GCCTAGAGCTTGACGGCGCCGCTCGGACCTCGCCCGGCGCGGGGTGGCGCCGCCGGACAT 490 consensus_5547#1 GCCTAGAGCTCGATGGCGCCGCCCGGACCTCGCCCGGCGCGGGGTGGCGCCGCCGGACAT 660 ********** ** ******** ************************************* consensus_5547#0 GGAGCTCTGGCGGCGGCGGAAGAATCCGAGCTCGGCATGGCATCCTCCTCCCCCGGCTTT 550 consensus_5547#1 GGAGCTCTAGCGGCGGCGGAAGAATCCGAGCTCGGCATGGCATCCTTCTCCCCCGGCTTT 720 ******** ************************************* ************* consensus_5547#0 GTTTCAACTTTTTCAGAATCCGAGCTCTGCACATGTGTTTGTTTCAGCTTTTTGAAGCGT 610 consensus_5547#1 GTTTCAACCTTTTCAGAATCGGAGCTCTTCACATGTGTTTATTTTAGCTTTTTGAAGTGT 780 ******** *********** ******* *********** *** ************ ** consensus_5547#0 TTGTTTCAGCCTTTTCAAGCGAGTTCCTTGCATCCTTGTTAAGGGACGAAAGCCTCAGCG 670 consensus_5547#1 TTGTTTCAGCTTTTTCAAGCGAGTTCCTCGCGTCCTTGTTAAGGGACGAAAGCCTCAGCG 840 ********** ***************** ** **************************** consensus_5547#0 AAGGAACGAGGGCCCACATCCTCTCTCCTCAACAACATCACACAACCTATGTGTAGGGGT 730 consensus_5547#1 AAGGAACGAGGGCCCACACCCTCTCTCCTCTACAACATCAAACAGCCTATGTGGAGGGGT 900 ****************** *********** ********* *** ******** ****** consensus_5547#0 GAAGCAACCCGCCACGGTGGTGCACTGTGAAGGG---TAGAGTGGAGCTGTTGCATGCTC 787 consensus_5547#1 GAAGCAACCCGCCATGTTGGTACACTGTGAAGGGCCTTAGAGGGACACTACTACATA--- 957 ************** * **** ************ ***** * ** * *** consensus_5547#0 CGCTCTTAGAAATTAGATTACGACTTTACGAGTATAAAGCTCCGCATCATCCTCAAAGCA 847 consensus_5547#1 -ACTCT----AATTCAGTTCTGGT------------------------------------ 976 **** **** ** * consensus_5547#0 GGCGCCGGGAGGTATACCAAACAGGTCTTAATCATTCGTTTTAGTTGGAACTGGAAGTGC 907 consensus_5547#1 ------------------------------------------------------------ consensus_5547#0 ATGGTTTGGACCATGCTAATGTCTCTGGCAATATTGCTCTGCAACAATTAACCAATGATG 967 consensus_5547#1 ------------------------------------------------------------ consensus_5547#0 ATGTTCATCTTTGTACTGAACTC 990 consensus_5547#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||