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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5554#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2315 fasta sequence
[CTGAGCAGAAGCCCGCGACGTGCCCTGCACTGCACGCGGAAGCAGAGCTCCGAGCCGTGGCGGCGGCGGGCGCGGGGCGGCGTCCGATCCAGATCCGCGCCGCCGGCGTGGGCGGCCGGCTTACGAGGTGGTGGGCGACTGGTTGGCATCATGGACTCCTCCCGCTTCCGGAGTGCGGCGGCCACGGAGGCGGCGGAGGAGGAGGCGGCGGGGTGGGTGACGGTCGAGGAGTGGGCGGGCTCCTCCGCCGCCGCGCTCTCCCGCACCGCCGTCCTCACCGCCTCCCCCTCCTCCTCCCTCGCGTCCCGCAGGTTCGGAAGCCGGTGGGGGCGGGTCGGCGGCCGGCTGCTCGGCGCCTTCGTGCCCGAGGGCTTTCCTGGGAGCGTCACTCCGGATTACGTCCCGTTCCAGATGTGGGATACCTTGCAGGGTCTCTCGACTTACATCCGTGCAATGCTGTCTACTCAAGCTCTTTTAGGCGCTATTGGAGTAGGTGAGAAATCTGCCACGGTTATAGGTGCCACTTTTCAGGTAAATTTCGATTTCATGTCATGGTTTAGCCTTCTGCAGTTTTTCTTAGGAGCTAGGCATAACGTAAATGGTTTCTGATGAGCATATGTTAACTTCTTTTTGTGTCTTAAATTTGTGCATATATGAAATAGATTGCTTAGGTTGTTGTTTTCATTGCCCTGAGCTGCAGTCAGCTGGTAGTAACTTGCTCTGCAGTCTAGTATGTGTTTTCCCCCCTCAATTTTCTTCTTTTATGGGCTTAGTTTCAATTTCCTCATCATCTTTAATTACATGCTATTCTTGCAGTGGTTTCTCAGGGATTTGACAGGAATGCTCGGTGGTATACTGTTCACTTTTTATCAGGTGTCAAATTCTCTTGCTAACTCGAATAGGCAATGCCATCTTATTGCCATTGATAGTTTGTTTACTGATGAGATAACTTGCTTGGTCAGTATTTTATTTGTCTATAGGGTGTACTAATTCTTTGTGCTTTCACTTTTCCCAGGGATCTAACCTTGATAGCAATGCTAAAATGTGGCGCCTAGTTGCAGACTTTATGAATGACCTTGGTAATATAGTCTATATCAGTAATCGCTGTATTAATTCTTTGAATGCGGGCGTCTAATTTAAAGGTCCTGCAATCGTTTGGTATTTATATTCAAGACTAAGCATTCATTTTTCTTTTGAGGTATTCTGCTATAGTAGGTGAATATTAAATAGCATATGTGTCACATGCCCCTGCAAATGCATTTCACATGGAATCTGGATTTAAAAAATCCTTTGTTTAATGCGAATTCCTTGTAGTATCAAAGTATGCTAGCAGAGTTTGTTTGTTGGTTTTGCAGGGATGTTGATGGATCTCTTAAGCCCTCTGTTTCCTTCATCATTGATTGTTATAATGTGTTTAGGCAGCCTATCTCGATCCTTCACTGGTGTTGCTAGTGGAGCAACTAGAGCAGCGTTAACCCAGCATTTTGCACTTGCCAATAATGCAGCTGATATATCTGCAAAGCTGCAGAAGCATACTCAACTTTTCAGGAGGGCAGTCAGGAGACACTTGCAACAATGTTAGGAATGGGACTGGGAATGCTTCTTGCCCATGTTACCAGAGGGCATGCTTTGGGTGTATGGGTTTCATTCCTTTCTCTAACGATATTCCATATGTATGCAAATTACAAGGCAGTGCAGTCACTTTCACTCACAACACTAAATTATGAGAGAAGTTCCATCCTGCTGCAGTACTTCATGGACAATGGTGAAGTCCTCACACCACAACAGGTTTCCAAGCAAGAGCATATTCTTCCATATTGGTCAAGCTGGCGGAAATTTCTTAGAATTAAACTGCCACATGAGCATGTACATTTAGGTGCTAAAGCCTCAAGGCTTACACACCCTGATTTGTAAGTACTAAGTTTTGAGTTATGCTTTTATGTGTTTATCACTCTATGGGGGAAGAAACATTTACTCTGTTTGTCAAATTTGATAGGCTGCAGATTGCAAAAACAAGGCCCTACTATAGAAATGGTATAACTCGTCTCTTGGTTAATGTAACACTAAACTAACTGTTGCTGACTTTTCTTTTACTTCACAAATCTATTCAGAGAACTATTTCTTGCTGGATAAGGAAGGCAGTGTTCACATTTTCATCCACAAGCAGGCAGCGGCAACAGATATTTTGATGTCCTTCATACATGGACTCGTGTTAGCACATTTGATGCAGAAGAGCAAATCTGGGCATGCGGAGGCTCGCCAATGGATTGATGAGAAATATAACACTTTTATCTCAAAGTTGCAAGTTGAAGGTT]
[+] EMBL AK067637 [CTGAGCAGAAGCCCGCGACGTGCCCTGCACTGCACGCGGAAGCAGAGCTCCGAGCCGTGGCGGCGGCGGGCGCGGGGCGGCGTCCGATCCAGATCCGCGCCGCCGGCGTGGGCGGCCGGCTTACGAGGTGGTGGGCGACTGGTTGGCATCATGGACTCCTCCCGCTTCCGGAGTGCGGCGGCCACGGAGGCGGCGGAGGAGGAGGCGGCGGGGTGGGTGACGGTCGAGGAGTGGGCGGGCTCCTCCGCCGCCGCGCTCTCCCGCACCGCCGTCCTCACCGCCTCCCCCTCCTCCTCCCTCGCGTCCCGCAGGTTCGGAAGCCGGTGGGGGCGGGTCGGCGGCCGGCTGCTCGGCGCCTTCGTGCCCGAGGGCTTTCCTGGGAGCGTCACTCCGGATTACGTCCCGTTCCAGATGTGGGATACCTTGCAGGGTCTCTCGACTTACATCCGTGCAATGCTGTCTACTCAAGCTCTTTTAGGCGCTATTGGAGTAGGTGAGAAATCTGCCACGGTTATAGGTGCCACTTTTCAGGTAAATTTCGATTTCATGTCATGGTTTAGCCTTCTGCAGTTTTTCTTAGGAGCTAGGCATAACGTAAATGGTTTCTGATGAGCATATGTTAACTTCTTTTTGTGTCTTAAATTTGTGCATATATGAAATAGATTGCTTAGGTTGTTGTTTTCATTGCCCTGAGCTGCAGTCAGCTGGTAGTAACTTGCTCTGCAGTCTAGTATGTGTTTTCCCCCCTCAATTTTCTTCTTTTATGGGCTTAGTTTCAATTTCCTCATCATCTTTAATTACATGCTATTCTTGCAGTGGTTTCTCAGGGATTTGACAGGAATGCTCGGTGGTATACTGTTCACTTTTTATCAGGTGTCAAATTCTCTTGCTAACTCGAATAGGCAATGCCATCTTATTGCCATTGATAGTTTGTTTACTGATGAGATAACTTGCTTGGTCAGTATTTTATTTGTCTATAGGGTGTACTAATTCTTTGTGCTTTCACTTTTCCCAGGGATCTAACCTTGATAGCAATGCTAAAATGTGGCGCCTAGTTGCAGACTTTATGAATGACCTTGGTAATATAGTCTATATCAGTAATCGCTGTATTAATTCTTTGAATGCGGGCGTCTAATTTAAAGGTCCTGCAATCGTTTGGTATTTATATTCAAGACTAAGCATTCATTTTTCTTTTGAGGTATTCTGCTATAGTAGGTGAATATTAAATAGCATATGTGTCACATGCCCCTGCAAATGCATTTCACATGGAATCTGGATTTAAAAAATCCTTTGTTTAATGCGAATTCCTTGTAGTATCAAAGTATGCTAGCAGAGTTTGTTTGTTGGTTTTGCAGGGATGTTGATGGATCTCTTAAGCCCTCTGTTTCCTTCATCATTGATTGTTATAATGTGTTTAGGCAGCCTATCTCGATCCTTCACTGGTGTTGCTAGTGGAGCAACTAGAGCAGCGTTAACCCAGCATTTTGCACTTGCCAATAATGCAGCTGATATATCTGCAAAGCTGCAGAAGCATACTCAACTTTTCAGGAGGGCAGTCAGGAGACACTTGCAACAATGTTAGGAATGGGACTGGGAATGCTTCTTGCCCATGTTACCAGAGGGCATGCTTTGGGTGTATGGGTTTCATTCCTTTCTCTAACGATATTCCATATGTATGCAAATTACAAGGCAGTGCAGTCACTTTCACTCACAACACTAAATTATGAGAGAAGTTCCATCCTGCTGCAGTACTTCATGGACAATGGTGAAGTCCTCACACCACAACAGGTTTCCAAGCAAGAGCATATTCTTCCATATTGGTCAAGCTGGCGGAAATTTCTTAGAATTAAACTGCCACATGAGCATGTACATTTAGGTGCTAAAGCCTCAAGGCTTACACACCCTGATTTGTAAGTACTAAGTTTTGAGTTATGCTTTTATGTGTTTATCACTCTATGGGGGAAGAAACATTTACTCTGTTTGTCAAATTTGATAGGCTGCAGATTGCAAAAACAAGGCCCTACTATAGAAATGGTATAACTCGTCTCTTGGTTAATGTAACACTAAACTAACTGTTGCTGACTTTTCTTTTACTTCACAAATCTATTCAGAGAACTATTTCTTGCTGGATAAGGAAGGCAGTGTTCACATTTTCATCCACAAGCAGGCAGCGGCAACAGATATTTTGATGTCCTTCATACATGGACTCGTGTTAGCACATTTGATGCAGAAGAGCAAATCTGGGCATGCGGAGGCTCGCCAATGGATTGATGAGAAATATAACACTTTTATCTCAAAGTTGCAAGTTGAAGGTT]
consensusID : consensus_5554#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 481 fasta sequence
[TGTATGCAAATTACAAGGCAGTGCAGTCACTTTCACTCACAACACTAAATTATGAGAGAAGTTCCATCCTGCTGCAGTACTTCATGGACAATGGTGAAGTCCTCACACCACAACAGGTTTCCAAGCAAGAGCATATTCTTCCATATTGGTCAAGCTGGCGGAAATTTCTTAGAATTAAACTGCCACATGAGCATGTACATTTAGGTGCTAAAGCCTCAAGGCTTACACACCCTGATTTGCTGCAGATTGCAAAAACAAGGCCCTACTATAGAAATGAGAACTATTTCTTGCTGGATAAGGAAGGCAGTGTTCACATTTTCATCCACAAGCAGGCAGCGGCAACAGATATTTTGATGTCCTTCATACATGGACTCGTGTTAGCACATTTGATGCAGAAGAGCAAATCTGGGCATGCGGAGGCTCGCCAATGGATTGATGAGAAATATAACACTTTTATCTCAAAGTTGCAAGTTGAAGGTTA]
[-] EMBL CB646226 [TGTATGCAAATTACAAGGCAGTGCAGTCACTTTCACTCACAACACTAAATTATGAGAGAAGTTCCATCCTGCTGCAGTACTTCATGGACAATGGTGAAGTCCTCACACCACAACAGGTTTCCAAGCAAGAGCATATTCTTCCATATTGGTCAAGCTGGCGGAAATTTCTTAGAATTAAACTGCCACATGAGCATGTACATTTAGGTGCTAAAGCCTCAAGGCTTACACACCCTGATTTGCTGCAGATTGCAAAAACAAGGCCCTACTATAGAAATGAGAACTATTTCTTGCTGGATAAGGAAGGCAGTGTTCACATTTTCATCCACAAGCAGGCAGCGGCAACAGATATTTTGATGTCCTTCATACATGGACTCGTGTTAGCACATTTGATGCAGAAGAGCAAATCTGGGCATGCGGAGGCTCGCCAATGGATTGATGAGAAATATAACACTTTTATCTCAAAGTTGCAAGTTGAAGGTTA]
[-] EMBL CA759045 [ tTTGGTCAAGCTGCCGGAAATTTTTTAGAATTAAACTGCCCCATGAGCATGT CATTTAGGTGCTAAAGCCTCAAGGCTTACACACCCTGATTTGCTGCAGATTGCAAAAACAAGGCCCTACTATAGAAATGAGAACTATTTCTTGCTGGATAAGGAAGGCAGTGTTCACATTTTCATCCACAAGCAGGCAGCGGCAACAGATATTTTGATGTCCTTCATACATGGACTCGTGTTAGCACATTTGATGCAGAAGAGCAAATCTGGGCATGCGGAGGCTCGCCAATGGATTGATGAGAAATATAACACTTTTATCTCAAAGTTGCAAGTTGAAGGTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5554#0 CTGAGCAGAAGCCCGCGACGTGCCCTGCACTGCACGCGGAAGCAGAGCTCCGAGCCGTGG 60
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 CGGCGGCGGGCGCGGGGCGGCGTCCGATCCAGATCCGCGCCGCCGGCGTGGGCGGCCGGC 120
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 TTACGAGGTGGTGGGCGACTGGTTGGCATCATGGACTCCTCCCGCTTCCGGAGTGCGGCG 180
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 GCCACGGAGGCGGCGGAGGAGGAGGCGGCGGGGTGGGTGACGGTCGAGGAGTGGGCGGGC 240
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 TCCTCCGCCGCCGCGCTCTCCCGCACCGCCGTCCTCACCGCCTCCCCCTCCTCCTCCCTC 300
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 GCGTCCCGCAGGTTCGGAAGCCGGTGGGGGCGGGTCGGCGGCCGGCTGCTCGGCGCCTTC 360
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 GTGCCCGAGGGCTTTCCTGGGAGCGTCACTCCGGATTACGTCCCGTTCCAGATGTGGGAT 420
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 ACCTTGCAGGGTCTCTCGACTTACATCCGTGCAATGCTGTCTACTCAAGCTCTTTTAGGC 480
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 GCTATTGGAGTAGGTGAGAAATCTGCCACGGTTATAGGTGCCACTTTTCAGGTAAATTTC 540
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 GATTTCATGTCATGGTTTAGCCTTCTGCAGTTTTTCTTAGGAGCTAGGCATAACGTAAAT 600
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 GGTTTCTGATGAGCATATGTTAACTTCTTTTTGTGTCTTAAATTTGTGCATATATGAAAT 660
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 AGATTGCTTAGGTTGTTGTTTTCATTGCCCTGAGCTGCAGTCAGCTGGTAGTAACTTGCT 720
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 CTGCAGTCTAGTATGTGTTTTCCCCCCTCAATTTTCTTCTTTTATGGGCTTAGTTTCAAT 780
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 TTCCTCATCATCTTTAATTACATGCTATTCTTGCAGTGGTTTCTCAGGGATTTGACAGGA 840
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 ATGCTCGGTGGTATACTGTTCACTTTTTATCAGGTGTCAAATTCTCTTGCTAACTCGAAT 900
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 AGGCAATGCCATCTTATTGCCATTGATAGTTTGTTTACTGATGAGATAACTTGCTTGGTC 960
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 AGTATTTTATTTGTCTATAGGGTGTACTAATTCTTTGTGCTTTCACTTTTCCCAGGGATC 1020
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 TAACCTTGATAGCAATGCTAAAATGTGGCGCCTAGTTGCAGACTTTATGAATGACCTTGG 1080
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 TAATATAGTCTATATCAGTAATCGCTGTATTAATTCTTTGAATGCGGGCGTCTAATTTAA 1140
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 AGGTCCTGCAATCGTTTGGTATTTATATTCAAGACTAAGCATTCATTTTTCTTTTGAGGT 1200
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 ATTCTGCTATAGTAGGTGAATATTAAATAGCATATGTGTCACATGCCCCTGCAAATGCAT 1260
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 TTCACATGGAATCTGGATTTAAAAAATCCTTTGTTTAATGCGAATTCCTTGTAGTATCAA 1320
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 AGTATGCTAGCAGAGTTTGTTTGTTGGTTTTGCAGGGATGTTGATGGATCTCTTAAGCCC 1380
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 TCTGTTTCCTTCATCATTGATTGTTATAATGTGTTTAGGCAGCCTATCTCGATCCTTCAC 1440
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 TGGTGTTGCTAGTGGAGCAACTAGAGCAGCGTTAACCCAGCATTTTGCACTTGCCAATAA 1500
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 TGCAGCTGATATATCTGCAAAGCTGCAGAAGCATACTCAACTTTTCAGGAGGGCAGTCAG 1560
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 GAGACACTTGCAACAATGTTAGGAATGGGACTGGGAATGCTTCTTGCCCATGTTACCAGA 1620
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 GGGCATGCTTTGGGTGTATGGGTTTCATTCCTTTCTCTAACGATATTCCATATGTATGCA 1680
consensus_5554#1 ----------------------------------------------------TGTATGCA 8
********
consensus_5554#0 AATTACAAGGCAGTGCAGTCACTTTCACTCACAACACTAAATTATGAGAGAAGTTCCATC 1740
consensus_5554#1 AATTACAAGGCAGTGCAGTCACTTTCACTCACAACACTAAATTATGAGAGAAGTTCCATC 68
************************************************************
consensus_5554#0 CTGCTGCAGTACTTCATGGACAATGGTGAAGTCCTCACACCACAACAGGTTTCCAAGCAA 1800
consensus_5554#1 CTGCTGCAGTACTTCATGGACAATGGTGAAGTCCTCACACCACAACAGGTTTCCAAGCAA 128
************************************************************
consensus_5554#0 GAGCATATTCTTCCATATTGGTCAAGCTGGCGGAAATTTCTTAGAATTAAACTGCCACAT 1860
consensus_5554#1 GAGCATATTCTTCCATATTGGTCAAGCTGGCGGAAATTTCTTAGAATTAAACTGCCACAT 188
************************************************************
consensus_5554#0 GAGCATGTACATTTAGGTGCTAAAGCCTCAAGGCTTACACACCCTGATTTGTAAGTACTA 1920
consensus_5554#1 GAGCATGTACATTTAGGTGCTAAAGCCTCAAGGCTTACACACCCTGATTTG--------- 239
***************************************************
consensus_5554#0 AGTTTTGAGTTATGCTTTTATGTGTTTATCACTCTATGGGGGAAGAAACATTTACTCTGT 1980
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 TTGTCAAATTTGATAGGCTGCAGATTGCAAAAACAAGGCCCTACTATAGAAATGGTATAA 2040
consensus_5554#1 -----------------CTGCAGATTGCAAAAACAAGGCCCTACTATAGAAATG------ 276
*************************************
consensus_5554#0 CTCGTCTCTTGGTTAATGTAACACTAAACTAACTGTTGCTGACTTTTCTTTTACTTCACA 2100
consensus_5554#1 ------------------------------------------------------------
consensus_5554#0 AATCTATTCAGAGAACTATTTCTTGCTGGATAAGGAAGGCAGTGTTCACATTTTCATCCA 2160
consensus_5554#1 -----------AGAACTATTTCTTGCTGGATAAGGAAGGCAGTGTTCACATTTTCATCCA 325
*************************************************
consensus_5554#0 CAAGCAGGCAGCGGCAACAGATATTTTGATGTCCTTCATACATGGACTCGTGTTAGCACA 2220
consensus_5554#1 CAAGCAGGCAGCGGCAACAGATATTTTGATGTCCTTCATACATGGACTCGTGTTAGCACA 385
************************************************************
consensus_5554#0 TTTGATGCAGAAGAGCAAATCTGGGCATGCGGAGGCTCGCCAATGGATTGATGAGAAATA 2280
consensus_5554#1 TTTGATGCAGAAGAGCAAATCTGGGCATGCGGAGGCTCGCCAATGGATTGATGAGAAATA 445
************************************************************
consensus_5554#0 TAACACTTTTATCTCAAAGTTGCAAGTTGAAGGTT- 2315
consensus_5554#1 TAACACTTTTATCTCAAAGTTGCAAGTTGAAGGTTA 481
***********************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||