These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5555#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence [CACTGACATGGCACTGCAAGACTACAAAGGTTGTACTATGAGATGTGTACGTGTGTTGTCGGTTTCATTCATGTTGATCCATGTATGGATGTAAGGTTTACATTCAAAAAAAAAAAACAAACACTACCCAACAAAAAACTATATCCCTAACCTAAATCTACATACCCTTCTCCAAAAACCGACGCCTCCCGGCTATCTTCCCAACGGTGTTTATCCTGTCATGGCCTCGGGTCATGACACTGATGACCTAAATTTCACACTGTTAAACTAATGGGGCTTCCTGATCCTCTTTAATCTGCACTCAGATTCCAACATTACACGCCAATCCCAATTACACCATGTCATTTCTACTCCTTCACTCCATGTC] [+] EMBL CF327788 [CACTGACATGGCACTGCAAGACTACAAAGGTTGTACTATGAGATGTGTACGTGTGTTGTCGGTTTCATTCATGTTGATCCATGTATGGATGTAAGGTTTACATTCAAAAAAAAAAAACAAACACTACCCAACAAAAAACTATATCCCTAACCTAAATCTACATACCCTTCTCCAAAAACCGACGCCTCCCGGCTATCTTCCCAACGGTGTTTATCCTGTCATGGCCTCGGGTCATGACACTGATGACCTAAATTTCACACTGTTAAACTAATGGGGCTTCCTGATCCTCTTTAATCTGCACTCAGATTCCAACATTACACGCCAATCCCAATTACACCATGTCATTTCTACTCCTTCACTCCATGTC] consensusID : consensus_5555#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 285 fasta sequence [TTTTTTTCTCTATATAAGGGAAGTATTGTATTCATCTCAAGTGAAGCAATGAATATCAATTAGTCTAATGTCTCCCTCCCAACAGTGTTCTTCTCCCTAGCCTAAATCTACATCCCTTCTCCAGGAGCCGACGCCGCCCGGCTATCTTCCCGACGGTGTTTATCCTGTCATGGCCTCGGGTCATGACACTGATGACCTAAATTTCACACTGTTAAAGTAAGGGGGCTTCCTGATCCTCTTTAATCTGCACTCAGATTCCAACATTACACGGCAATCCCAGTTAGA] [+] EMBL CF327697 [TTTTTTTCTCTATATAAGGGAAGTATTGTATTCATCTCAAGTGAAGCAATGAATATCAATTAGTCTAATGTCTCCCTCCCAACAGTGTTCTTCTCCCTAGCCTAAATCTACATCCCTTCTCCAGGAGCCGACGCCGCCCGGCTATCTTCCCGACGGTGTTTATCCTGTCATGGCCTCGGGTCATGACACTGATGACCTAAATTTCACACTGTTAAAGTAAGGGGGCTTCCTGATCCTCTTTAATCTGCACTCAGATTCCAACATTACACGGCAATCCCAGTTAG ] [-] EMBL CF327696 [ TTTTTTCTCTATATAAGGGAAGTATTGTATTCATCTCAAGTGAAGCAATGAATATCAATTAGTCTAATGTCTCCCTCCCAACAGTGTTCTTCTCCCTAGCCTAAATCTACATCCCTTCTCCAGGAGCCGACGCCGCCCGGCTATCTTCCCGACGGTGTTTATCCTGTCATGGCCTCGGGTCATGACACTGATGACCTAAATTTCACACTGTTAAAGTAAGGGGGCTTCCTGATCCTCTTTAATCTGCACTCAGATTCCAACATTACACGGCAATCCCAGTTAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5555#0 CACTGACATGGCACTGCAAGACTACAAAGGTTGTACTATGAGATGTGTACGTGTGTTGTC 60 consensus_5555#1 ---------------------------------TTTTTTTCTCTATATAAGGGAAGTATT 27 * * * * * ** * * * * consensus_5555#0 GGTTTCATTCATGTTGATCCATGTATGGATGTAAGGTTTACATTCAAAAAAAAAAAACAA 120 consensus_5555#1 GTATTCATCTCAAGTGAAGCA---ATGAATATCAA--TTAGTCT-----------AATGT 71 * ***** *** ** *** ** * * *** * ** consensus_5555#0 ACACTACCCAACAAAAAACTATATCCCTAACCTAAATCTACATACCCTTCTCCAAAAACC 180 consensus_5555#1 CTCCCTCCCAACAGTGTTCT-TCTCCCTAGCCTAAATCTACAT-CCCTTCTCCAGGAGCC 129 * ******* ** * ****** ************* ********** * ** consensus_5555#0 GACGCCTCCCGGCTATCTTCCCAACGGTGTTTATCCTGTCATGGCCTCGGGTCATGACAC 240 consensus_5555#1 GACGCCGCCCGGCTATCTTCCCGACGGTGTTTATCCTGTCATGGCCTCGGGTCATGACAC 189 ****** *************** ************************************* consensus_5555#0 TGATGACCTAAATTTCACACTGTTAAACTAATGGGGCTTCCTGATCCTCTTTAATCTGCA 300 consensus_5555#1 TGATGACCTAAATTTCACACTGTTAAAGTAAGGGGGCTTCCTGATCCTCTTTAATCTGCA 249 *************************** *** **************************** consensus_5555#0 CTCAGATTCCAACATTACACGCCAATCCCAATTACACCATGTCATTTCTACTCCTTCACT 360 consensus_5555#1 CTCAGATTCCAACATTACACGGCAATCCCAGTTAGA------------------------ 285 ********************* ******** *** * consensus_5555#0 CCATGTC 367 consensus_5555#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||