These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5557#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 772 fasta sequence [CACCTCCCAAACCCCTCAACCCTCGCCGCCGCCGCCGCCGCCGCCGCTCGTCGCTCTGCTCCGCCGCAGCCATGGGGAAGTTCCGCAAGCTCGGCCGCCACGCCGCCCACCGAGTATCCATGCTCAGGACGATGGTGTCGCAGCTCGTGAAGCACGAGCGAATCGAGACCACCGTCGCCAAGGCGAAGGAGGTGCGGCGCAAGGCGGATCAGATGGTGCAGCTCGGGAAAGAGGGCACATTGGATGCAGCAAGACGTGCTTCTGCTTTTGTTCGGGGAGATGATGTTGTTCATAAGCTATTTACAGAGCTAGCCTACCGTTACAAGAACCGAGCTGGTGGGTACACCAGACTATTGCGAACTAGGATACGAGTTGGTGATGCTGCACCGATGGCATACATTGAGTTCGTTGATAGGGAAAATGAACTTCGAGAAGCCAAACCTGCAACACCACAGCCACCTCAACGGTCTCCTCTTGATCCCTGGGCCAAGTCTCGTGCTAGCCAACAGTGGGCGGGACCTAAAATCAGCGAGGGCTCTAGAAAAGAAGGCTTATGAAAATAATATTCATGTGTTGAGTTCCTTGAGACTGTATTCAATTTTCTGTACTAGGCTATGAGGCACCAGCTTGTCATTTTGGAGGAGTTTTGTCACGAGATATATTGTCAATAGAATAATTTGAACTTGGCTGCTTACTTTTAACAAAGCCTGATGCCCTCATGAGATGTGTATCATGTATGACTGCAAATCATTCATT-GAGATATGAAATGCAN] [+] EMBL AK064685 [CACCTCCCAAACCCCTCAACCCTCGCCGCCGCCGCCGCCGCCGCCGCTCGTCGCTCTGCTCCGCCGCAGCCATGGGGAAGTTCCGCAAGCTCGGCCGCCACGCCGCCCACCGAGTATCCATGCTCAGGACGATGGTGTCGCAGCTCGTGAAGCACGAGCGAATCGAGACCACCGTCGCCAAGGCGAAGGAGGTGCGGCGCAAGGCGGATCAGATGGTGCAGCTCGGGAAAGAGGGCACATTGGATGCAGCAAGACGTGCTTCTGCTTTTGTTCGGGGAGATGATGTTGTTCATAAGCTATTTACAGAGCTAGCCTACCGTTACAAGAACCGAGCTGGTGGGTACACCAGACTATTGCGAACTAGGATACGAGTTGGTGATGCTGCACCGATGGCATACATTGAGTTCGTTGATAGGGAAAATGAACTTCGAGAAGCCAAACCTGCAACACCACAGCCACCTCAACGGTCTCCTCTTGATCCCTGGGCCAAGTCTCGTGCTAGCCAACAGTGGGCGGGACCTAAAATCAGCGAGGGCTCTAGAAAAGAAGGCTTATGAAAATAATATTCATGTGTTGAGTTCCTTGAGACTGTATTCAATTTTCTGTACTAGGCTATGAGGCACCAGCTTGTCATTTTGGAGGAGTTTTGTCACGAGATATATTGTCAATAGAATAATTTGAACTTGGCTGCTTACTTTTAACAAAGCCTGATGCCCTCATGAGATGTGTATCATGTATGACTGCAAATCATTCATT GAGATATGAAATGC ] [+] EMBL AA751676 [ cacgagATGAACTTCGANAAGCCAAACCTGCAACACCACAGCCACCTCAACGGTCTCCTCTTGATCCCTGGGCCAAGTCTCGTGCTAGCCAACAGTGGGCGGGACCTAAAATCAGNGAGGGCTCTAGAAAAGAAGGCTTATGAAAATAATATTCATGTGTTGAGTTCCTTGAGACTGTATTCAATTTTCTGTACTAGGCTATGAGGCACCAGCTTGTCATTTTGGAGGAGTTTTGTCACGAGATATATTGTCAATAGAATAATTTGAACTTGGCTGCTTACTTTTAACAAANCCTGATGCCCTCATGANATGTGTATCATGTTTGACTGCAAATCATTCATTGGANATATGAAATGCAN] consensusID : consensus_5557#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 118 fasta sequence [CAAGACGTGCTTCTGCTTTTGTTCGGGGAGATGATGTTGTTCATAAGCTATTTACAGAGCTAGCCTACCGTTACAAGTAAAACTCCTTCATGTGTTGTGTATCAATTTGATTTGTTTC] [+] EMBL CF305936 [CAAGACGTGCTTCTGCTTTTGTTCGGGGAGATGATGTTGTTCATAAGCTATTTACAGAGCTAGCCTACCGTTACAAGTAAAACTCCTTCATGTGTTGTGTATCAATTTGATTTGTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5557#0 CACCTCCCAAACCCCTCAACCCTCGCCGCCGCCGCCGCCGCCGCCGCTCGTCGCTCTGCT 60 consensus_5557#1 ------------------------------------------------------------ consensus_5557#0 CCGCCGCAGCCATGGGGAAGTTCCGCAAGCTCGGCCGCCACGCCGCCCACCGAGTATCCA 120 consensus_5557#1 ------------------------------------------------------------ consensus_5557#0 TGCTCAGGACGATGGTGTCGCAGCTCGTGAAGCACGAGCGAATCGAGACCACCGTCGCCA 180 consensus_5557#1 ------------------------------------------------------------ consensus_5557#0 AGGCGAAGGAGGTGCGGCGCAAGGCGGATCAGATGGTGCAGCTCGGGAAAGAGGGCACAT 240 consensus_5557#1 ------------------------------------------------------------ consensus_5557#0 TGGATGCAGCAAGACGTGCTTCTGCTTTTGTTCGGGGAGATGATGTTGTTCATAAGCTAT 300 consensus_5557#1 ---------CAAGACGTGCTTCTGCTTTTGTTCGGGGAGATGATGTTGTTCATAAGCTAT 51 *************************************************** consensus_5557#0 TTACAGAGCTAGCCTACCGTTACAAGAACCGAGCTGGTGGGTACACCAGACTATTGCGAA 360 consensus_5557#1 TTACAGAGCTAGCCTACCGTTACAAGTAAAACTCCTTCATGTGTTGTGTATCAATTTGAT 111 ************************** * * ** * * * ** consensus_5557#0 CTAGGATACGAGTTGGTGATGCTGCACCGATGGCATACATTGAGTTCGTTGATAGGGAAA 420 consensus_5557#1 TTGTTTC----------------------------------------------------- 118 * consensus_5557#0 ATGAACTTCGAGAAGCCAAACCTGCAACACCACAGCCACCTCAACGGTCTCCTCTTGATC 480 consensus_5557#1 ------------------------------------------------------------ consensus_5557#0 CCTGGGCCAAGTCTCGTGCTAGCCAACAGTGGGCGGGACCTAAAATCAGCGAGGGCTCTA 540 consensus_5557#1 ------------------------------------------------------------ consensus_5557#0 GAAAAGAAGGCTTATGAAAATAATATTCATGTGTTGAGTTCCTTGAGACTGTATTCAATT 600 consensus_5557#1 ------------------------------------------------------------ consensus_5557#0 TTCTGTACTAGGCTATGAGGCACCAGCTTGTCATTTTGGAGGAGTTTTGTCACGAGATAT 660 consensus_5557#1 ------------------------------------------------------------ consensus_5557#0 ATTGTCAATAGAATAATTTGAACTTGGCTGCTTACTTTTAACAAAGCCTGATGCCCTCAT 720 consensus_5557#1 ------------------------------------------------------------ consensus_5557#0 GAGATGTGTATCATGTATGACTGCAAATCATTCATTGAGATATGAAATGCAN 772 consensus_5557#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||