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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5561#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1205 fasta sequence
[CGTCTCCATCCTCGAAGCTAGGGTTTAAGGCGAGGAGGGGTGAGGTGACGAGATTGGAGGCGAAGGCTAGGAGAGGCTTGCGATTTTCCTCTGGATTCACAGATTCCCGAACTTTTGCGGAAGTGGTGAGAGAAGGTATGGATCGTAGACCGCAAGGGGGGTGGCAGCCGGTGAAGCGGCGATTTGGGGAAGAGGGGAGGGGATTTCGTGACCTCACCGAAGGGGAGTTGAGGGAGAGATTGCAGAGGGAAAGGGCGAGAGAAGGGGAGAGAGAGGGAAGCAGGGAGCGAGGTGGTGAACAGCGCGGACCTCGGTGTTTTGGATCACCGGTGGGACGCCGGGAGGGGGGCAGGGGAGCTGGTCGCGGCGACGAGAACTGGCAAGGAGGTCGTCCAGATGTGGCGCGGCAGGGCGGCGGTGGAGATGGTGGCTGGCATGGGGGAAGAGGGGATGGGGGCAGACTTGGAGGAGGAAGAGCAGAAGTTATCAAATGCTTCAAGTGTGCTCAAGAGGGACACCTTCAAATCGACTGCCCGAACCCTCCAATCTGCTATACATGTAAGAAATCTGGTCATATTGCTGCAGAATGTTCAAATTTCCATCGCAAGGGGATTCATCTGTGCGGATGTGGGATTGCTGGCCAGTGCTTTAATAGCATGACGATTGAGACTGATGGGGGAGAAGATGATCAGATTCCTATCAGGGGGATATTGACTGTAATTAGTGGAGAAGGTTCTGTGGATCAGATAGAATGGAAGCTGAAGTACAAATTGTTTAAGGGAGTTGTGGGACTGGAAGGTGACTGCAATCAGTGAGAAAACTTTCCTGATATCTTTCCCTTCAAAGGAGGCTAGGAGAGAGCTGACAAAATTTGATGGTTTTGATTTAAGTTCCTCTATCAAAGCTAAGGTGGAGGAGACCAACAGGACAGAGGAATCTTTTGCTGAGCTAAGAGAAGTTTGGGTCAAAGCTTATAGGGTGCCTAGAATTGCTAGAAAGGAGGAGTTGAAAGATCTATCATATTTGGTTGGGGAGCCAATTGAGGTTGATGAGACAAGTTTGAGAGGTTTGGGACCGGTTAGGGTCAAGGTGGCAGTATGTTCACCGGAGGAAATTCAGGGAAGCACCTCTGTGTTCATAAACAGGGTGGGATATAGAATCAGATGGGAGACTGAAGAAGGAAACATGGAGCAACTGAATCCTTC]
[+] EMBL AK064507 [CGTCTCCATCCTCGAAGCTAGGGTTTAAGGCGAGGAGGGGTGAGGTGACGAGATTGGAGGCGAAGGCTAGGAGAGGCTTGCGATTTTCCTCTGGATTCACAGATTCCCGAACTTTTGCGGAAGTGGTGAGAGAAGGTATGGATCGTAGACCGCAAGGGGGGTGGCAGCCGGTGAAGCGGCGATTTGGGGAAGAGGGGAGGGGATTTCGTGACCTCACCGAAGGGGAGTTGAGGGAGAGATTGCAGAGGGAAAGGGCGAGAGAAGGGGAGAGAGAGGGAAGCAGGGAGCGAGGTGGTGAACAGCGCGGACCTCGGTGTTTTGGATCACCGGTGGGACGCCGGGAGGGGGGCAGGGGAGCTGGTCGCGGCGACGAGAACTGGCAAGGAGGTCGTCCAGATGTGGCGCGGCAGGGCGGCGGTGGAGATGGTGGCTGGCATGGGGGAAGAGGGGATGGGGGCAGACTTGGAGGAGGAAGAGCAGAAGTTATCAAATGCTTCAAGTGTGCTCAAGAGGGACACCTTCAAATCGACTGCCCGAACCCTCCAATCTGCTATACATGTAAGAAATCTGGTCATATTGCTGCAGAATGTTCAAATTTCCATCGCAAGGGGATTCATCTGTGCGGATGTGGGATTGCTGGCCAGTGCTTTAATAGCATGACGATTGAGACTGATGGGGGAGAAGATGATCAGATTCCTATCAGGGGGATATTGACTGTAATTAGTGGAGAAGGTTCTGTGGATCAGATAGAATGGAAGCTGAAGTACAAATTGTTTAAGGGAGTTGTGGGACTGGAAGGTGACTGCAATCAGTGAGAAAACTTTCCTGATATCTTTCCCTTCAAAGGAGGCTAGGAGAGAGCTGACAAAATTTGATGGTTTTGATTTAAGTTCCTCTATCAAAGCTAAGGTGGAGGAGACCAACAGGACAGAGGAATCTTTTGCTGAGCTAAGAGAAGTTTGGGTCAAAGCTTATAGGGTGCCTAGAATTGCTAGAAAGGAGGAGTTGAAAGATCTATCATATTTGGTTGGGGAGCCAATTGAGGTTGATGAGACAAGTTTGAGAGGTTTGGGACCGGTTAGGGTCAAGGTGGCAGTATGTTCACCGGAGGAAATTCAGGGAAGCACCTCTGTGTTCATAAACAGGGTGGGATATAGAATCAGATGGGAGACTGAAGAAGGAAACATGGAGCAACTGAATCCTTC]
consensusID : consensus_5561#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 720 fasta sequence
[GTAGACCGCAAGGGGGGTGGCAGCCGGTGAAGCGGCGATTTGGGGAAGAGGGGAGGGGATTTCGTGACCTCACCGAAGGGGAGTTGAGGGAGAGATTGCAGAGGGAAAGGGCGAGAGAAGGGGAGAGAGAGGGAAGCAGGGAGCGAGGTGGTGAACAGCGCGGACCTCGGTGTTTTGGATCACCGGTGGGACGCCGGGAGGGGGGCAGGGGAGCTGGTCGCGGCGACGAGAACTGGCAAGGAGGTCGTCCAGATGTGGCGCGGCAGGGCGGCGGTGGAGATGGTGGCTGGCATGGGGGAAGAGGGGATGGGGGCAGACTTGGAGGAGGAAGAGCAGAAGTTATCAAATGCTTCAAGTGTGCTCAAGAGGGACACCTTCAAATCGACTGCCCGAACCCTCCAATCTGCTATACATAAATGGAGTTTGCTACAAAGTGAAGAGATGAAGGGCATCCTGAAAACTTGGATAGAAGAGATGAGTTGGAAAATGAAGCTTTGGAGACCTGAAGTTCATCTGCCAGAAGATATCTGATAATTTTCTAAGAAATGCCTTAGTACTGTGTCACTGTTCCCCAAACGTTTTGTCATTTCCTTTTAGGAACTCTATCAGGGGTTTTGCATGGAGCCTGTTCCAGCTTGCAAAACTTTTTTTTTTCTCTTGCTTGCAGTACTTTTGTCTTGGGCTTTCTCCAAAAAGCCGGATCGTTATCTAATATAATGA]
[+] EMBL AK063628 [GTAGACCGCAAGGGGGGTGGCAGCCGGTGAAGCGGCGATTTGGGGAAGAGGGGAGGGGATTTCGTGACCTCACCGAAGGGGAGTTGAGGGAGAGATTGCAGAGGGAAAGGGCGAGAGAAGGGGAGAGAGAGGGAAGCAGGGAGCGAGGTGGTGAACAGCGCGGACCTCGGTGTTTTGGATCACCGGTGGGACGCCGGGAGGGGGGCAGGGGAGCTGGTCGCGGCGACGAGAACTGGCAAGGAGGTCGTCCAGATGTGGCGCGGCAGGGCGGCGGTGGAGATGGTGGCTGGCATGGGGGAAGAGGGGATGGGGGCAGACTTGGAGGAGGAAGAGCAGAAGTTATCAAATGCTTCAAGTGTGCTCAAGAGGGACACCTTCAAATCGACTGCCCGAACCCTCCAATCTGCTATACATAAATGGAGTTTGCTACAAAGTGAAGAGATGAAGGGCATCCTGAAAACTTGGATAGAAGAGATGAGTTGGAAAATGAAGCTTTGGAGACCTGAAGTTCATCTGCCAGAAGATATCTGATAATTTTCTAAGAAATGCCTTAGTACTGTGTCACTGTTCCCCAAACGTTTTGTCATTTCCTTTTAGGAACTCTATCAGGGGTTTTGCATGGAGCCTGTTCCAGCTTGCAAAACTTTTTTTTTTCTCTTGCTTGCAGTACTTTTGTCTTGGGCTTTCTCCAAAAAGCCGGATCGTTATCTAATATAATGA]
consensusID : consensus_5561#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence
[TTTTTTTTTTTTTTTTAAGGAAAGATCATTATATTAGATAACGATCCGGCTTTTTGGAGAAAGCCCAAGACGAAAGTACTGCAAGCAAGAGAAAAAAAAAGTTTTGCAAGCTGGAACAGGCTCCATGCAAAACCCCTGATAGAGTTCCTAAAAGGAAATGACAGAACGTTTGGGGAACAGTGACACAGTACTAAGCCATTTCTTAAAAAATTATCAGATATCTTCTGGCAGATGAACTTCAGGTCTCCAAAGCTTCATTTTCCAACTCATCTCTTCTATCCAAGTTTTCAGGATGCCCTTCATCTCTTCACTTTGTAGCAAACTCCATTTCTCCATCCCAAATTCTTCTTTGAAGTTCTGATTTCAGCCTTGGCCGCCACCGAGATATCCTTATTTTTGATCCTGTCACTCTGCCTGATAGCCTGTACCACCTCTTTTCTTCTCTTCTTAGCTTCATGCAGGGGGTGCTCATTTTCCTTATCCCCCTCTTGATTGAACTCTATCTCCATGCTGATGTTATCCTCTTCGCCAAGCAAATTTCTCCCCGTGCCGGGCTAATCTTTGTCTTTGGCTTCTTCTTGAAAGGAAGCTTACAGTTTCTGAGGTGAGAACATCCCCTCGCGGCACCTGTAGATAGAAGCAGGATAGGCGCAGTTGATGTTGAACGGGGGAAGCAGCC]
[+] EMBL CA758998 [TTTTTTTTTTTTTTTTAAGGAAAGATCATTATATTAGATAACGATCCGGCTTTTTGGAGAAAGCCCAAGACGAAAGTACTGCAAGCAAGAGAAAAAAAAAGTTTTGCAAGCTGGAACAGGCTCCATGCAAAACCCCTGATAGAGTTCCTAAAAGGAAATGACAGAACGTTTGGGGAACAGTGACACAGTACTAAGCCATTTCTTAAAAAATTATCAGATATCTTCTGGCAGATGAACTTCAGGTCTCCAAAGCTTCATTTTCCAACTCATCTCTTCTATCCAAGTTTTCAGGATGCCCTTCATCTCTTCACTTTGTAGCAAACTCCATTTCTCCATCCCAAATTCTTCTTTGAAGTTCTGATTTCAGCCTTGGCCGCCACCGAGATATCCTTATTTTTGATCCTGTCACTCTGCCTGATAGCCTGTACCACCTCTTTTCTTCTCTTCTTAGCTTCATGCAGGGGGTGCTCATTTTCCTTATCCCCCTCTTGATTGAACTCTATCTCCATGCTGATGTTATCCTCTTCGCCAAGCAAATTTCTCCCCGTGCCGGGCTAATCTTTGTCTTTGGCTTCTTCTTGAAAGGAAGCTTACAGTTTCTGAGGTGAGAACATCCCCTCGCGGCACCTGTAGATAGAAGCAGGATAGGCGCAGTTGATGTTGAACGGGGGAAGCAGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5561#0 CGTCTCCATCCTCGAAGCTAGGGTTTAAGGCGAGGAGGGGTGAGGTGACGAGATTGGAGG 60
consensus_5561#1 ------------------------------------------------------------
consensus_5561#2 ------------------------------------------------------------
consensus_5561#0 CGAAGGCTAGGAGAGGCTTGCGATTTTCCTCTGGATTCACAGATTCCCGAACTTTTGCGG 120
consensus_5561#1 ------------------------------------------------------------
consensus_5561#2 ------------------------------------------------------------
consensus_5561#0 AAGTGGTGAGAGAAGGTATGGATCGTAGACCGCAAGGGGGGTGGCAGCCGGTGAAGCGGC 180
consensus_5561#1 ------------------------GTAGACCGCAAGGGGGGTGGCAGCCGGTGAAGCGGC 36
consensus_5561#2 -------------------------------------------------------TTTTT 5
consensus_5561#0 GATTTGGGGAAGAGGGGAGGGGATTTCGTGACCTCACCGAAGGGGAGTTGAGGGAGAGAT 240
consensus_5561#1 GATTTGGGGAAGAGGGGAGGGGATTTCGTGACCTCACCGAAGGGGAGTTGAGGGAGAGAT 96
consensus_5561#2 TTTTTTTTTTTAAGGAAAGATCATTATATTAGATAAC--GATCCGGCTTTTTGGAGAAAG 63
*** *** ** *** * * * ** * * ** ***** *
consensus_5561#0 TGCAGAGGGAAAGGGCGAGAGAAGGGGAGAGAGAGGGAAGCAGGGAGCGAGGTGGTGAAC 300
consensus_5561#1 TGCAGAGGGAAAGGGCGAGAGAAGGGGAGAGAGAGGGAAGCAGGGAGCGAGGTGGTGAAC 156
consensus_5561#2 CCCAAGACGAAAGTACTGCAAGCAAGAGAAAAAAAAAGTTTTGCAAGCTGGAACAGGCTC 123
** ***** * * * * * * * *** * * *
consensus_5561#0 AGCGCGGACCTCGGTGTTTTGGATCACCGGTGGGACGCCGGGAGGGGGGCAGGGGAGCTG 360
consensus_5561#1 AGCGCGGACCTCGGTGTTTTGGATCACCGGTGGGACGCCGGGAGGGGGGCAGGGGAGCTG 216
consensus_5561#2 CATGCAAAACCCC---TGATAGAGTTCCTAAAAGGAAATGACAGAACGTTTGGGGAACAG 180
** * * * * * ** ** * * ** * ***** * *
consensus_5561#0 -GTCGCGGCGACGAGA-ACTGGCAAGGAGGTCGTCCAGATGTGGCGCGGCAGGGCGGCGG 418
consensus_5561#1 -GTCGCGGCGACGAGA-ACTGGCAAGGAGGTCGTCCAGATGTGGCGCGGCAGGGCGGCGG 274
consensus_5561#2 TGACACAGTACTAAGCCATTTCTTAAAAAATTATC-AGATATCTTCTGGCAGAT------ 233
* * * * ** * * * * * ** **** * *****
consensus_5561#0 TGGAGATGGTGGCTGGCATGGGGGAAGAGGGGATGGGGGCAGACTTGGAGGAGGAAGAGC 478
consensus_5561#1 TGGAGATGGTGGCTGGCATGGGGGAAGAGGGGATGGGGGCAGACTTGGAGGAGGAAGAGC 334
consensus_5561#2 --GAACTTCAGGTCTCCA---------AAGCTTCATTTTCCAACTCATCTCTTCTATCCA 282
** * ** ** * * * *** *
consensus_5561#0 AGAAGTTATCAAATGCTTCAAGTGTGCTCAAGAGGGACACCTTCAAATCGACTGCCCGAA 538
consensus_5561#1 AGAAGTTATCAAATGCTTCAAGTGTGCTCAAGAGGGACACCTTCAAATCGACTGCCCGAA 394
consensus_5561#2 AGTTTTCAGGATGCCCTTCATCTCTTCACTTTGTAGCAAACTCCATTTCTCCATCCCAAA 342
** * * * ***** * * * * * * ** ** ** * *** **
consensus_5561#0 CCCTCCAATCTGCTATACATGTAAGAAATCTGGTCATATTGCTGCAGAATGTTCAAATTT 598
consensus_5561#1 CCCTCCAATCTGCTATACATAAATGGAGT---------TTGCTACAAAGTGAAGAGAT-- 443
consensus_5561#2 TTCTTC--TTTGAAGTTCTGATTTCAGCCTTGGCCG--CCACCGAGATATCCTTATTTTT 398
** * * ** * * * * * *
consensus_5561#0 CCATCGCAAGGGGATTCATCTGTGCGGATGTGGGATTGCTGGCCAGTGCTTTAATAGCAT 658
consensus_5561#1 -------GAAGGGCATCCTGAAAACTTGGATAGAAGAGATGAGTTGGAAAATGAAGCTTT 496
consensus_5561#2 G-ATCCTGTCACTCTGCCTGATAGCCTGTACCACCTCTTTTCTTCTCTTCTTAGCTTCAT 457
* * * * * *
consensus_5561#0 GACGAT-TGAGACTGATGGGGGAGAAGATGATCAGATTCCTATCAGGGGGATATTGACTG 717
consensus_5561#1 GGAGACCTGAAGTTCATCTGCCAGAAGAT-ATCTGATAATTTTCTAAGAAATGCC----- 550
consensus_5561#2 GCAGGG--GGTGCTCATTTTCC------TTATCCCCCTCTTGATTGAACTCTATCTCCAT 509
* * * * ** * *** * *
consensus_5561#0 TAATTAGTGGAGAAGGTTCTGTGGATCAGATAGAATGGAAGCTGAAGT-ACAAATTGTTT 776
consensus_5561#1 ---TTAGTACTGT-GTCACTGTTCCCCAAACGTTTTGTCATTTCCTTTTAGGAACTCTAT 606
consensus_5561#2 --GCTGATGTTATCCTCTTCGCCAAGCAAATTTCTCCCCGTGCCGGGCTAATCTTTGTCT 567
* * * ** * * * * *
consensus_5561#0 AAGGGAGTTGTGGGACTGGAAGGTGACTGCAATCAGTGAGAAAACTTTCCTGATATCTTT 836
consensus_5561#1 CAGGG-GTTTTG---CATGGAGCCTGTTCCAGCTTGCAAAACTTTTTTTTTTCTCTTGCT 662
consensus_5561#2 TTGGCTTCTTCTTGAAAGGAAGCTTACAGTTTCTGAGGTGAGAACATCCCC--TCGCGGC 625
** * * ** * * *
consensus_5561#0 CCCTTCAAAGGAGGCTAGGAGAGAGCTGACAAAATTTGATGGTTTTGATTTAAGTTCCTC 896
consensus_5561#1 TGCAGTACTTTTGTCTTGGGCTTTCTCCAAAAAGCCGGATCGTT---ATCTAATATAATG 719
consensus_5561#2 ACCTGTAGATAGAAGCAGGATAGGCGCAGTTGATGTTGAACGGGGGAAGCAGCC------ 679
* * ** * ** * *
consensus_5561#0 TATCAAAGCTAAGGTGGAGGAGACCAACAGGACAGAGGAATCTTTTGCTGAGCTAAGAGA 956
consensus_5561#1 A----------------------------------------------------------- 720
consensus_5561#2 ------------------------------------------------------------
consensus_5561#0 AGTTTGGGTCAAAGCTTATAGGGTGCCTAGAATTGCTAGAAAGGAGGAGTTGAAAGATCT 1016
consensus_5561#1 ------------------------------------------------------------
consensus_5561#2 ------------------------------------------------------------
consensus_5561#0 ATCATATTTGGTTGGGGAGCCAATTGAGGTTGATGAGACAAGTTTGAGAGGTTTGGGACC 1076
consensus_5561#1 ------------------------------------------------------------
consensus_5561#2 ------------------------------------------------------------
consensus_5561#0 GGTTAGGGTCAAGGTGGCAGTATGTTCACCGGAGGAAATTCAGGGAAGCACCTCTGTGTT 1136
consensus_5561#1 ------------------------------------------------------------
consensus_5561#2 ------------------------------------------------------------
consensus_5561#0 CATAAACAGGGTGGGATATAGAATCAGATGGGAGACTGAAGAAGGAAACATGGAGCAACT 1196
consensus_5561#1 ------------------------------------------------------------
consensus_5561#2 ------------------------------------------------------------
consensus_5561#0 GAATCCTTC 1205
consensus_5561#1 ---------
consensus_5561#2 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||