These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5564#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 430 fasta sequence [GCGCGCCACGGACGGCGGCGGCGGCGACATGCTCGCCGGCGCGTCGGCCGCCGCCGCCGCCAAGGCGGGGAGAATGGCGGCCGTCTCGCCGTCCAAGCTGCTGGAACGCGCGGCGGTGAACGGCGCCGCGCAGCACGACGACTGGAGGAGCCTGGGTACGGCGGCGGCGGCGGAGGCGGCGAACGGCGTGCGGCGGCACAGGTCGTCGTCGTCGTCGCGGTATTCCTTCGATTGCTAGTATAGCCAGCGTTGCCAAAGAGCGCGTTCTGTGTGTATATATCAGGTTATCAACGAGAGTTTTTGAGGCTGTAAAAAAATTAAAGACGGATTAATTACCTGCCAAAGTGCCAATTAGCAAATGTTTGCCATACACGAACATTACTCGTTGCCTGTTCAGCAATTCAGCAATGAAAATGAAAATCTGGAACAA] [+] EMBL CB668375 [GCGCGCCACGGACGGCGGCGGCGGCGACATGCTCGCCGGCGCGTCGGCCGCCGCCGCCGCCAAGGCGGGGAGAATGGCGGCCGTCTCGCCGTCCAAGCTGCTGGAACGCGCGGCGGTGAACGGCGCCGCGCAGCACGACGACTGGAGGAGCCTGGGTACGGCGGCGGCGGCGGAGGCGGCGAACGGCGTGCGGCGGCACAGGTCGTCGTCGTCGTCGCGGTATTCCTTCGATTGCTAGTATAGCCAGCGTTGCCAAAGAGCGCGTTCTGTGTGTATATATCAGGTTATCAACGAGAGTTTTTGAGGCTGTAAAAAAATTAAAGACGGATTAATTACCTGCCAAAGTGCCAATTAGCAAATGTTTGCCATACACGAACATTACTCGTTGCCTGTTCAGCAATTCAGCAATGAAAATGAAAAT ] [-] EMBL CB668376 [ GCGGGGAGAATGGCGGCCGTCTCGCCGTCCAAGCTGCTGGAACGCGCGGCGGTGAACGGCGCCGCGCAGCACGACGACTGGAGGAGCCTGGGTACGGCGGCGGCGGCGGAGGCGGCGAACGGCGTGCGGCGGCACAGGTCGTCGTCGTCGTCGCGGTATTCCTTCGATTGCTAGTATAGCCAGCGTTGCCAAAGAGCGCGTTCTGTGTGTATATATCAGGTTATCAACGAGAGTTTTTGAGGCTGTAAAAAAATTAAAGAGGGATTAATTACCTGCCAAAGTGCCAATTAGCAAATGTTTGCCATACACGAACATTACTCGTTGCCTGTTAAGGAATTCAGCAATGAAAATGAAAATCTGGAACAA] consensusID : consensus_5564#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence [TCCCGTGCTGGACTTCGAGTTCATGCTCACCCCGCGTCTACGAGGCTCTCCGCGAGCACCCTCGAGAAGGAGGCCCGGAGGGACGGCGGCGCGGCGACATGCTCGCCGGCGCGTCGCCCCCCGCCGCCAAGCGGGGAGAATGGCGCCGTCTCCCGTCCAAGCTGCTGGAACGCGCGCGGTGAACGGCGCCGCGCCAGCACGACGACCTGGAGGAGCCTGGGTACGGCGGCGGCGGCGGAGGCGGCGAACGGCGTGCGGCGGCACAGGTTCCGTCGTCGTCGTCCGGTATTCCTTCGATTGCTAGTATAGCCAGCGTTGCCAAAGAGCGCGTTCTGTGTGTATATATCAGGTCTATCAACGAGAGTTTTTTGAGGGCTGTAAAAAAATTAAAGACGGATAATACCTCCAAGTCCATACAATGTTCCATAAA] [+] EMBL BI806037 [TCCCGTGCTGGACTTCGAGTTCATGCTCACCCCGCGTCTACGAGGCTCTCCGCGAGCACCCTCGAGAAGGAGGCCCGGAGGGACGGCGGCGCGGCGACATGCTCGCCGGCGCGTCGCCCCCCGCCGCCAAGCGGGGAGAATGGCGCCGTCTCCCGTCCAAGCTGCTGGAACGCGCGCGGTGAACGGCGCCGCGCCAGCACGACGACCTGGAGGAGCCTGGGTACGGCGGCGGCGGCGGAGGCGGCGAACGGCGTGCGGCGGCACAGGTTCCGTCGTCGTCGTCCGGTATTCCTTCGATTGCTAGTATAGCCAGCGTTGCCAAAGAGCGCGTTCTGTGTGTATATATCAGGTCTATCAACGAGAGTTTTTTGAGGGCTGTAAAAAAATTAAAGACGGATAATACCTCCAAGTCCATACAATGTTCCATAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5564#0 ------------------------------------------------------------ consensus_5564#1 TCCCGTGCTGGACTTCGAGTTCATGCTCACCCCGCGTCTACGAGGCTCTCCGCGAGCACC 60 consensus_5564#0 ------------GCGCGCCACGGACGGCGGCGGCGGCGACATGCTCGCCGGCGCGTCGGC 48 consensus_5564#1 CTCGAGAAGGAGGCCCGG-AGGGACGGCGGCG-CGGCGACATGCTCGCCGGCGCGTCGCC 118 ** ** * *********** ************************* * consensus_5564#0 CGCCGCCGCCGCCAAGGCGGGGAGAATGGCGGCCGTCTCGCCGTCCAAGCTGCTGGAACG 108 consensus_5564#1 CCCCGCCGCC----AAGCGGGGAGAATGGCG-CCGTCTC-CCGTCCAAGCTGCTGGAACG 172 * ******** * *************** ******* ******************** consensus_5564#0 CGCGGCGGTGAACGGCGCCGCGC-AGCACGACGAC-TGGAGGAGCCTGGGTACGGCGGCG 166 consensus_5564#1 CGCG-CGGTGAACGGCGCCGCGCCAGCACGACGACCTGGAGGAGCCTGGGTACGGCGGCG 231 **** ****************** *********** ************************ consensus_5564#0 GCGGCGGAGGCGGCGAACGGCGTGCGGCGGCACAGGT--CGTCGTCGTCGTCGCGGTATT 224 consensus_5564#1 GCGGCGGAGGCGGCGAACGGCGTGCGGCGGCACAGGTTCCGTCGTCGTCGTC-CGGTATT 290 ************************************* ************* ******* consensus_5564#0 CCTTCGATTGCTAGTATAGCCAGCGTTGCCAAAGAGCGCGTTCTGTGTGTATATATCAGG 284 consensus_5564#1 CCTTCGATTGCTAGTATAGCCAGCGTTGCCAAAGAGCGCGTTCTGTGTGTATATATCAGG 350 ************************************************************ consensus_5564#0 T-TATCAACGAGAGTTTTT--GAGGCTGTAAAAAAATTAAAGACGGATTAATTACCTGCC 341 consensus_5564#1 TCTATCAACGAGAGTTTTTTGAGGGCTGTAAAAAAATTAAAGACGGATAA--TACCTCC- 407 * ***************** ************************* * ***** * consensus_5564#0 AAAGTGCCAATTAGCAAATGTTTGCCATACACGAACATTACTCGTTGCCTGTTCAGCAAT 401 consensus_5564#1 -AAGTCCATAC-----AATGTT--CCATAAA----------------------------- 430 **** * * ****** ***** * consensus_5564#0 TCAGCAATGAAAATGAAAATCTGGAACAA 430 consensus_5564#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||