cluster # 5564

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Oryza sativa
cluster # 5564 cluster # 5564 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5564#0 length = 430 sequences # 2

consensus_5564#1 length = 430 sequences # 1

consensusID : consensus_5564#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 430
fasta sequence

                              [GCGCGCCACGGACGGCGGCGGCGGCGACATGCTCGCCGGCGCGTCGGCCGCCGCCGCCGCCAAGGCGGGGAGAATGGCGGCCGTCTCGCCGTCCAAGCTGCTGGAACGCGCGGCGGTGAACGGCGCCGCGCAGCACGACGACTGGAGGAGCCTGGGTACGGCGGCGGCGGCGGAGGCGGCGAACGGCGTGCGGCGGCACAGGTCGTCGTCGTCGTCGCGGTATTCCTTCGATTGCTAGTATAGCCAGCGTTGCCAAAGAGCGCGTTCTGTGTGTATATATCAGGTTATCAACGAGAGTTTTTGAGGCTGTAAAAAAATTAAAGACGGATTAATTACCTGCCAAAGTGCCAATTAGCAAATGTTTGCCATACACGAACATTACTCGTTGCCTGTTCAGCAATTCAGCAATGAAAATGAAAATCTGGAACAA]

[+] EMBL CB668375             [GCGCGCCACGGACGGCGGCGGCGGCGACATGCTCGCCGGCGCGTCGGCCGCCGCCGCCGCCAAGGCGGGGAGAATGGCGGCCGTCTCGCCGTCCAAGCTGCTGGAACGCGCGGCGGTGAACGGCGCCGCGCAGCACGACGACTGGAGGAGCCTGGGTACGGCGGCGGCGGCGGAGGCGGCGAACGGCGTGCGGCGGCACAGGTCGTCGTCGTCGTCGCGGTATTCCTTCGATTGCTAGTATAGCCAGCGTTGCCAAAGAGCGCGTTCTGTGTGTATATATCAGGTTATCAACGAGAGTTTTTGAGGCTGTAAAAAAATTAAAGACGGATTAATTACCTGCCAAAGTGCCAATTAGCAAATGTTTGCCATACACGAACATTACTCGTTGCCTGTTCAGCAATTCAGCAATGAAAATGAAAAT         ]
[-] EMBL CB668376             [                                                                GCGGGGAGAATGGCGGCCGTCTCGCCGTCCAAGCTGCTGGAACGCGCGGCGGTGAACGGCGCCGCGCAGCACGACGACTGGAGGAGCCTGGGTACGGCGGCGGCGGCGGAGGCGGCGAACGGCGTGCGGCGGCACAGGTCGTCGTCGTCGTCGCGGTATTCCTTCGATTGCTAGTATAGCCAGCGTTGCCAAAGAGCGCGTTCTGTGTGTATATATCAGGTTATCAACGAGAGTTTTTGAGGCTGTAAAAAAATTAAAGAGGGATTAATTACCTGCCAAAGTGCCAATTAGCAAATGTTTGCCATACACGAACATTACTCGTTGCCTGTTAAGGAATTCAGCAATGAAAATGAAAATCTGGAACAA]




>consensus_5564#0
GCGCGCCACGGACGGCGGCGGCGGCGACATGCTCGCCGGCGCGTCGGCCGCCGCCGCCGC
CAAGGCGGGGAGAATGGCGGCCGTCTCGCCGTCCAAGCTGCTGGAACGCGCGGCGGTGAA
CGGCGCCGCGCAGCACGACGACTGGAGGAGCCTGGGTACGGCGGCGGCGGCGGAGGCGGC
GAACGGCGTGCGGCGGCACAGGTCGTCGTCGTCGTCGCGGTATTCCTTCGATTGCTAGTA
TAGCCAGCGTTGCCAAAGAGCGCGTTCTGTGTGTATATATCAGGTTATCAACGAGAGTTT
TTGAGGCTGTAAAAAAATTAAAGACGGATTAATTACCTGCCAAAGTGCCAATTAGCAAAT
GTTTGCCATACACGAACATTACTCGTTGCCTGTTCAGCAATTCAGCAATGAAAATGAAAA
TCTGGAACAA

consensusID : consensus_5564#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 430
fasta sequence

                              [TCCCGTGCTGGACTTCGAGTTCATGCTCACCCCGCGTCTACGAGGCTCTCCGCGAGCACCCTCGAGAAGGAGGCCCGGAGGGACGGCGGCGCGGCGACATGCTCGCCGGCGCGTCGCCCCCCGCCGCCAAGCGGGGAGAATGGCGCCGTCTCCCGTCCAAGCTGCTGGAACGCGCGCGGTGAACGGCGCCGCGCCAGCACGACGACCTGGAGGAGCCTGGGTACGGCGGCGGCGGCGGAGGCGGCGAACGGCGTGCGGCGGCACAGGTTCCGTCGTCGTCGTCCGGTATTCCTTCGATTGCTAGTATAGCCAGCGTTGCCAAAGAGCGCGTTCTGTGTGTATATATCAGGTCTATCAACGAGAGTTTTTTGAGGGCTGTAAAAAAATTAAAGACGGATAATACCTCCAAGTCCATACAATGTTCCATAAA]

[+] EMBL BI806037             [TCCCGTGCTGGACTTCGAGTTCATGCTCACCCCGCGTCTACGAGGCTCTCCGCGAGCACCCTCGAGAAGGAGGCCCGGAGGGACGGCGGCGCGGCGACATGCTCGCCGGCGCGTCGCCCCCCGCCGCCAAGCGGGGAGAATGGCGCCGTCTCCCGTCCAAGCTGCTGGAACGCGCGCGGTGAACGGCGCCGCGCCAGCACGACGACCTGGAGGAGCCTGGGTACGGCGGCGGCGGCGGAGGCGGCGAACGGCGTGCGGCGGCACAGGTTCCGTCGTCGTCGTCCGGTATTCCTTCGATTGCTAGTATAGCCAGCGTTGCCAAAGAGCGCGTTCTGTGTGTATATATCAGGTCTATCAACGAGAGTTTTTTGAGGGCTGTAAAAAAATTAAAGACGGATAATACCTCCAAGTCCATACAATGTTCCATAAA]




>consensus_5564#1
TCCCGTGCTGGACTTCGAGTTCATGCTCACCCCGCGTCTACGAGGCTCTCCGCGAGCACC
CTCGAGAAGGAGGCCCGGAGGGACGGCGGCGCGGCGACATGCTCGCCGGCGCGTCGCCCC
CCGCCGCCAAGCGGGGAGAATGGCGCCGTCTCCCGTCCAAGCTGCTGGAACGCGCGCGGT
GAACGGCGCCGCGCCAGCACGACGACCTGGAGGAGCCTGGGTACGGCGGCGGCGGCGGAG
GCGGCGAACGGCGTGCGGCGGCACAGGTTCCGTCGTCGTCGTCCGGTATTCCTTCGATTG
CTAGTATAGCCAGCGTTGCCAAAGAGCGCGTTCTGTGTGTATATATCAGGTCTATCAACG
AGAGTTTTTTGAGGGCTGTAAAAAAATTAAAGACGGATAATACCTCCAAGTCCATACAAT
GTTCCATAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5564#0      ------------------------------------------------------------
consensus_5564#1      TCCCGTGCTGGACTTCGAGTTCATGCTCACCCCGCGTCTACGAGGCTCTCCGCGAGCACC 60
                                                                                  

consensus_5564#0      ------------GCGCGCCACGGACGGCGGCGGCGGCGACATGCTCGCCGGCGCGTCGGC 48
consensus_5564#1      CTCGAGAAGGAGGCCCGG-AGGGACGGCGGCG-CGGCGACATGCTCGCCGGCGCGTCGCC 118
                                  ** **  * *********** ************************* *

consensus_5564#0      CGCCGCCGCCGCCAAGGCGGGGAGAATGGCGGCCGTCTCGCCGTCCAAGCTGCTGGAACG 108
consensus_5564#1      CCCCGCCGCC----AAGCGGGGAGAATGGCG-CCGTCTC-CCGTCCAAGCTGCTGGAACG 172
                      * ********    * *************** ******* ********************

consensus_5564#0      CGCGGCGGTGAACGGCGCCGCGC-AGCACGACGAC-TGGAGGAGCCTGGGTACGGCGGCG 166
consensus_5564#1      CGCG-CGGTGAACGGCGCCGCGCCAGCACGACGACCTGGAGGAGCCTGGGTACGGCGGCG 231
                      **** ****************** *********** ************************

consensus_5564#0      GCGGCGGAGGCGGCGAACGGCGTGCGGCGGCACAGGT--CGTCGTCGTCGTCGCGGTATT 224
consensus_5564#1      GCGGCGGAGGCGGCGAACGGCGTGCGGCGGCACAGGTTCCGTCGTCGTCGTC-CGGTATT 290
                      *************************************  ************* *******

consensus_5564#0      CCTTCGATTGCTAGTATAGCCAGCGTTGCCAAAGAGCGCGTTCTGTGTGTATATATCAGG 284
consensus_5564#1      CCTTCGATTGCTAGTATAGCCAGCGTTGCCAAAGAGCGCGTTCTGTGTGTATATATCAGG 350
                      ************************************************************

consensus_5564#0      T-TATCAACGAGAGTTTTT--GAGGCTGTAAAAAAATTAAAGACGGATTAATTACCTGCC 341
consensus_5564#1      TCTATCAACGAGAGTTTTTTGAGGGCTGTAAAAAAATTAAAGACGGATAA--TACCTCC- 407
                      * *****************    ************************* *  ***** * 

consensus_5564#0      AAAGTGCCAATTAGCAAATGTTTGCCATACACGAACATTACTCGTTGCCTGTTCAGCAAT 401
consensus_5564#1      -AAGTCCATAC-----AATGTT--CCATAAA----------------------------- 430
                       **** *  *      ******  ***** *                             

consensus_5564#0      TCAGCAATGAAAATGAAAATCTGGAACAA 430
consensus_5564#1      -----------------------------