These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5565#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1429 fasta sequence [TCTTTTTCCTGAGCCGCCGTGCCCCAGCCGCCTCTCCCCACGCTAGCCACTCTCTCCACCGCCGGCCGCCAACTCCAGCCGAGTCGCGCCGCCTCTCCGGTCGTCCCCGATCTGCGCCGTCGCCTCCCTCGGCTTTGTAGTGAAGAGCTCTATCCCGGCCACCCGTTCTTTTGCCCTGAACCCCGCCGGAAGTCGTCATCACTGTGAAGGCCGAACCGTCGCCATGTTTTGATCTCCGGCGAAGCTTTGCCGTCGACTCCGTGGTCGCCGAACCCCGCTGTCTCCTCCGTTGGCATCGCAGCGACAACAGCAAGCATGGCAGCCGCCCCCGTGAAGCCACAAGCCATCGGAGCGTCATCGTCACCGTGAAGCCGATCTAATCCATCTTCAGCCGTGCCGCTCATCGCCGTCCATCGCCGCCTTCGTTCGCTGTCGCCACCCACGGGATCGCAGGAGGGAGGTGAAGACTGTCCGCCCCTTAGTTGCTGCCTCCCCTCGTCAAAACGCCGCCGTCATCGTGGACAGAGCCACGCCGCCGCTTAATCTCGTCGCCGGCCATCTCCCGTCATCGTCCGTGGTCATGCCGGCCCTTGGTTTAGTTTTCCGTTGTTTCGGATGATCGTTCGTTCGTTGGAGGAGTTCCTGAAGACGAATTGAAGACGCTTGTTTGTAAGTTGAAGAAAAAGGATCCAGAAGGAGAAGACGTTTGGCTTATACCCCAGTTGAGCTGCCTGTGGGAGTGGAGCTGAAGCTTCGCTAGGTTTTATTTTTCCACTCTAGTTTTCTTCATGGCTTGGGAGAAGAACTTCAGGGTGTGACACCTCGCGATTCCCAACCCTAACCGCCGTCTCCCCGCCCCAAAGGTCTCCGGCGCGTGCTCCCCCCAACCACCGGCGCCGATTCCCAACCCTGCACGCCGGAAGCTCTCCCATCGCCAGGTGTTATATATAATTTTGAGATACCGGTCACGCCGACGCCGTCTTCTCCCTACTTCACCCGCAGGGTGAAACGACAGTTGAAGGTTACTAGAGCGTTTGGTGCAGGCTTTCTAAATAAGATACAAGTGAAGCTATTTGTGTGAGCTCTAGCTGTACCAAAATCTCTCGAGTTA-CATTGTTGAAC-AAAGTTGGTATTGGCTGTGCAA-CCAGAT-CAGTCG-CACAGGACTTTGTCC--AAATTGTGTGTGT-CA-TTCCTAATGGATG-CATAAA-CAATAATAAAACTTTTGTATGCGATATGTG-TTTGAT-CCTATG-AAG-AATGTGA-GGGGGATTTGGGTGATCTCA-CCAGCTGTTGGCTCTTA-CATGGCATGA-TTTACAGTGTGTAAAAAAACATGACGTGCTCTGTAAGAATTGATGAGTCTTGTTCAATATAAAAGCAGAACTATCGATATGCCGTGGATGAACATCCCTTGTTTGGATTAATTTGCATCAAAAAA] [+] EMBL AK101768 [TCTTTTTCCTGAGCCGCCGTGCCCCAGCCGCCTCTCCCCACGCTAGCCACTCTCTCCACCGCCGGCCGCCAACTCCAGCCGAGTCGCGCCGCCTCTCCGGTCGTCCCCGATCTGCGCCGTCGCCTCCCTCGGCTTTGTAGTGAAGAGCTCTATCCCGGCCACCCGTTCTTTTGCCCTGAACCCCGCCGGAAGTCGTCATCACTGTGAAGGCCGAACCGTCGCCATGTTTTGATCTCCGGCGAAGCTTTGCCGTCGACTCCGTGGTCGCCGAACCCCGCTGTCTCCTCCGTTGGCATCGCAGCGACAACAGCAAGCATGGCAGCCGCCCCCGTGAAGCCACAAGCCATCGGAGCGTCATCGTCACCGTGAAGCCGATCTAATCCATCTTCAGCCGTGCCGCTCATCGCCGTCCATCGCCGCCTTCGTTCGCTGTCGCCACCCACGGGATCGCAGGAGGGAGGTGAAGACTGTCCGCCCCTTAGTTGCTGCCTCCCCTCGTCAAAACGCCGCCGTCATCGTGGACAGAGCCACGCCGCCGCTTAATCTCGTCGCCGGCCATCTCCCGTCATCGTCCGTGGTCATGCCGGCCCTTGGTTTAGTTTTCCGTTGTTTCGGATGATCGTTCGTTCGTTGGAGGAGTTCCTGAAGACGAATTGAAGACGCTTGTTTGTAAGTTGAAGAAAAAGGATCCAGAAGGAGAAGACGTTTGGCTTATACCCCAGTTGAGCTGCCTGTGGGAGTGGAGCTGAAGCTTCGCTAGGTTTTATTTTTCCACTCTAGTTTTCTTCATGGCTTGGGAGAAGAACTTCAGGGTGTGACACCTCGCGATTCCCAACCCTAACCGCCGTCTCCCCGCCCCAAAGGTCTCCGGCGCGTGCTCCCCCCAACCACCGGCGCCGATTCCCAACCCTGCACGCCGGAAGCTCTCCCATCGCCAGGTGTTATATATAATTTTGAGATACCGGTCACGCCGACGCCGTCTTCTCCCTACTTCACCCGCAGGGTGAAACGACAGTTGAAGGTTACTAGAGCGTTTGGTGCAGGCTTTCTAAATAAGATACAAGTGAAGCTATTTGTGTGAGCTCTAGCTGTACCAAAATCTCTCGAGTTA CATTGTTGAAC AAAGTTGGTATTGGCTGTGCAA CCAGAT CAGTCG CACAGGACTTTGTCC AAATTGTGTGTGT CA TTCCTAATGGATG CATAAA CAATAATAAAACTTTTGTATGCGATATGTG TTTGAT CCTATG AAG AATGTGA GGGGGATTTGGGTGATCTCA CCAGCTGTTGGCTCTTA CATGGCATGA TTTACAGTGTGTAAAAAAACATGACGTGCTCTGTAAGAATTGATGAGTCTTGTTCAATATAAAAGCAGAACTATCGA ] [+] EMBL AU173411 [ TTGGTGCAGGCTTTNTTAATAAGATACAAGTGAAGCTATTTGTGTGAGCTCTAGCTGTACCAAAATCTCTCGAGTTACCATTGTTGAACAAAAGTTGGTATTGGCTGTGCAACCCAGATCCAGTCGCCCCAGGACTTTGTCCCAAAATGGTGTGTGTCCATTTCCTAATGGATGCCATAAACCAATAATAAAACTTTTGTATGCGATATGTGTTTTGATCCCTATGAAAGAAATGTGAGGGGGGATTTGGGTGATCTCACCCAGCTGTTGGCTCTTACCATGGCATGATTTTCCAGTGTGTAAAAAAACATGACGTGCTCTGTAAGAATTGATGAGTCTTGTTCAATATAAAAGCAGAACTATCGATATGCCGTGGATGAACATCCCTTGTTTGGATTAATTTGCATCAAAAAA] consensusID : consensus_5565#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence [ATCCCGTTTGTATCCATGGGTACAAAGTGCTAGCATCAGGATACATATATTCTTCTTTTATTGTCAAGCAGTTCATGAGCACCAATCGATCCATTCTTTTTCTGATCATGTTGTGCTAATTTATATTTGTTCAGATTTACATGCCATTTGGGTTCACATATTCATAGTTATCAAATATTTCTGTCATTAGAGTAGCTGGACTGACAATCATTTTTAGTTACAGTGGTATATTTGGCAGAAATCTCACATCTTAATATCTCAAAATTAAAGTAACAATACTCAAATAAACTTTTCCTCATGATTTCTATTGTGCTTTAGGTGTTATATATAATTTTGAGATACCGGTCACGCCGACGCCGTCTTCTCCCTACTTCACCCGCAGGGTGAAACGACAGTTGAAGGTTACTAGAGCGTTTGGTGCAGGCTTTCTAAATAAGATACAAGTGAAGCTATTTGTGTGAGCTCTAGCTGTACCAAAATCTCTCGAGTTACATTGTTGAACAAAGTTGGTATTGGCTGTGCAACCAGATCAGTCGCACAGGACTTTGTCCAAAATGTGTGTGTCATTCCTAATGGATGCATAAACAATAATAAAACTTTTGTATGCGATATGGGGTTGATCTAAGGAAGAATGTG] [-] EMBL CB684975 [ATCCCGTTTGTATCCATGGGTACAAAGTGCTAGCATCAGGATACATATATTCTTCTTTTATTGTCAAGCAGTTCATGAGCACCAATCGATCCATTCTTTTTCTGATCATGTTGTGCTAATTTATATTTGTTCAGATTTACATGCCATTTGGGTTCACATATTCATAGTTATCAAATATTTCTGTCATTAGAGTAGCTGGACTGACAATCATTTTTAGTTACAGTGGTATATTTGGCAGAAATCTCACATCTTAATATCTCAAAATTAAAGTAACAATACTCAAATAAACTTTTCCTCATGATTTCTATTGTGCTTTAGGTGTTATATATAATTTTGAGATACCGGTCACGCCGACGCCGTCTTCTCCCTACTTCACCCGCAGGGTGAAACGACAGTTGAAGGTTACTAGAGCGTTTGGTGCAGGCTTTCTAAATAAGATACAAGTGAAGCTATTTGTGTGAGCTCTAGCTGTACCAAAATCTCTCGAGTTACATTGTTGAACAAAGTTGGTATTGGCTGTGCAACCAGATCAGTCGCACAGGACTTTGTCCAAAATGTGTGTGTCATTCCTAATGGATGCATAAACAATAATAAAACTTTTGTATGCGATATGGGGTTGATCTAAGGAAGAATGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5565#0 TCTTTTTCCTGAGCCGCCGTGCCCCAGCCGCCTCTCCCCACGCTAGCCACTCTCTCCACC 60 consensus_5565#1 ------------------------------------------------------------ consensus_5565#0 GCCGGCCGCCAACTCCAGCCGAGTCGCGCCGCCTCTCCGGTCGTCCCCGATCTGCGCCGT 120 consensus_5565#1 ------------------------------------------------------------ consensus_5565#0 CGCCTCCCTCGGCTTTGTAGTGAAGAGCTCTATCCCGGCCACCCGTTCTTTTGCCCTGAA 180 consensus_5565#1 ------------------------------------------------------------ consensus_5565#0 CCCCGCCGGAAGTCGTCATCACTGTGAAGGCCGAACCGTCGCCATGTTTTGATCTCCGGC 240 consensus_5565#1 ------------------------------------------------------------ consensus_5565#0 GAAGCTTTGCCGTCGACTCCGTGGTCGCCGAACCCCGCTGTCTCCTCCGTTGGCATCGCA 300 consensus_5565#1 ------------------------------------------------------------ consensus_5565#0 GCGACAACAGCAAGCATGGCAGCCGCCCCCGTGAAGCCACAAGCCATCGGAGCGTCATCG 360 consensus_5565#1 ------------------------------------------------------------ consensus_5565#0 TCACCGTGAAGCCGATCTAATCCATCTTCAGCCGTGCCGCTCATCGCCGTCCATCGCCGC 420 consensus_5565#1 ------------------------------------------------------------ consensus_5565#0 CTTCGTTCGCTGTCGCCACCCACGGGATCGCAGGAGGGAGGTGAAGACTGTCCGCCCCTT 480 consensus_5565#1 ------------------------------------------------------------ consensus_5565#0 AGTTGCTGCCTCCCCTCGTCAAAACGCCGCCGTCATCGTGGACAGAGCCACGCCGCCGCT 540 consensus_5565#1 ------------------------------------------------------------ consensus_5565#0 TAATCTCGTCGCCGGCCATCTCCCGTCATCGTCCGTGGTCATGCCGGCCCTTGGTTTAGT 600 consensus_5565#1 ------------------------------------------------------------ consensus_5565#0 TTTCCGTTGTTTCGGATGATCGTTCGTTCGTTGGAGGAGTTCCTGAAGACGAATTGAAGA 660 consensus_5565#1 --------ATCCCGTTTG--TATCCATGGGTACAAAGTGCT-------AGCATCAGGATA 43 * ** ** * * * ** * * * * * * * * * consensus_5565#0 CGCTTGTTTGTAAGTTGAAGAAAAAGGATCCAGAAGGAGAAGACGTTTGGCTTATACCCC 720 consensus_5565#1 CATATATTCTTCTTTTATTGTCAAGCAGTTCATGAGCACCAATCGATCCATTCTTTTTCT 103 * * ** * ** * ** * ** ** * * ** * * * * consensus_5565#0 AGTTGAGCTGCCTGTGGGAGTGGAGCTGAAGCTTCGCTAGGTTTTATTTTTCCACTCTAG 780 consensus_5565#1 GATCATGTTGT--------GCTAATTTATA--TTTGTTCAGATTTACATG-CCATTTGGG 152 * * ** * * * * ** * * * **** * *** * * consensus_5565#0 TTTTC---TTCATGGCTTGGGAGAAGAACT----TCAGGGTGTGACACCTCGCGATTCCC 833 consensus_5565#1 TTCACATATTCATAGTTATCAAATATTTCTGTCATTAGAGTAGCTGGACTGACAATCATT 212 ** * ***** * * * * ** * ** ** ** * ** consensus_5565#0 AACCCTAACCGCCGTCTCCCCGCCCCAAAGGTCTCCGGCGCGTGCTCCCCCCAACCACCG 893 consensus_5565#1 TTTAGTTACAGTGGTATATTTGG--CAGAAATCTCACAT-CTTAATATCTCAAAATTAAA 269 * ** * ** * * ** * **** * * * * * ** consensus_5565#0 GCGCCGATTCCCAACC---CTGCACGCCGGAAGCTCTCCCAT-CGCCAGGTGTTATATAT 949 consensus_5565#1 GTAACAATACTCAAATAAACTTTTCCTCATGATTTCTATTGTGCTTTAGGTGTTATATAT 329 * * ** * *** ** * * * *** * * ************* consensus_5565#0 AATTTTGAGATACCGGTCACGCCGACGCCGTCTTCTCCCTACTTCACCCGCAGGGTGAAA 1009 consensus_5565#1 AATTTTGAGATACCGGTCACGCCGACGCCGTCTTCTCCCTACTTCACCCGCAGGGTGAAA 389 ************************************************************ consensus_5565#0 CGACAGTTGAAGGTTACTAGAGCGTTTGGTGCAGGCTTTCTAAATAAGATACAAGTGAAG 1069 consensus_5565#1 CGACAGTTGAAGGTTACTAGAGCGTTTGGTGCAGGCTTTCTAAATAAGATACAAGTGAAG 449 ************************************************************ consensus_5565#0 CTATTTGTGTGAGCTCTAGCTGTACCAAAATCTCTCGAGTTACATTGTTGAACAAAGTTG 1129 consensus_5565#1 CTATTTGTGTGAGCTCTAGCTGTACCAAAATCTCTCGAGTTACATTGTTGAACAAAGTTG 509 ************************************************************ consensus_5565#0 GTATTGGCTGTGCAACCAGATCAGTCGCACAGGACTTTGTCCAAATTGTGTGTGTCATTC 1189 consensus_5565#1 GTATTGGCTGTGCAACCAGATCAGTCGCACAGGACTTTGTCCAAAATGTGTGTGTCATTC 569 ********************************************* ************** consensus_5565#0 CTAATGGATGCATAAACAATAATAAAACTTTTGTATGCGATATGTGTTTGATCCTATGAA 1249 consensus_5565#1 CTAATGGATGCATAAACAATAATAAAACTTTTGTATGCGATATGGGGTTGATCTAAGGAA 629 ******************************************** * ****** * *** consensus_5565#0 GAATGTGAGGGGGATTTGGGTGATCTCACCAGCTGTTGGCTCTTACATGGCATGATTTAC 1309 consensus_5565#1 GAATGTG----------------------------------------------------- 636 ******* consensus_5565#0 AGTGTGTAAAAAAACATGACGTGCTCTGTAAGAATTGATGAGTCTTGTTCAATATAAAAG 1369 consensus_5565#1 ------------------------------------------------------------ consensus_5565#0 CAGAACTATCGATATGCCGTGGATGAACATCCCTTGTTTGGATTAATTTGCATCAAAAAA 1429 consensus_5565#1 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||