These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5580#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1576 fasta sequence [GGGAAAAAAAAAGATGGACAAGATGATGCGCACGGTGATCGCCGCCGTCGTGGTCGGCCTCCTCGCCGCGGCCCACACGGCCACCACCGCACCGGAACAATCCTACGGCGGCGCAACGGCGACCGTGGCGCCGAAGCAGCCGGCGGCGGGGGAAGACGTCAACAAGGCCTTGGCGGCGGAGACGGCGGCTGCCGAGGCGGAGGACGCCGCCGAGGAGGAGGACGCCGCGGCCGCTCTGGTCACCGGCTTCACCGCCGGCGCGGCGAACTCCGCGCCGGGGGTGACTGCCGTCATGAAGCCGGTGCTGGAGAAGGCGGACGCCGGGCAATTCTACCAGGACGTGCCATGGATTCCGGATCCCAACGACGAGGGGAATCCTCCCAAGTCTCTGCCGGCGGCGCAGGTCCTGCCGGCCAAGGGCGGCGCTGGCGCGGCAGGATCATCGCCGCCGTCGAAGGAGGTGCAGGTGGATTACTACGCGACGACCCAGCCGAAGAAGCCGGAGGAGCCGCCGACGGTCGCGGCGGTCCAAAAGGACAATTGCGTCCCGCCGGCGGCGCCCAAGCCAGCTGTTCCGGCGACGCCGTCGACGTCTCCTCCTTCGAATAAGGAGTATGCTCCGGCGGCGCCAGGCGTGGTGCCGGTGAACCAGCCTTCTTCCCCGGCGGCGCCAGCAGGCGTGGTGCCGGCGCCGGTGCAGCCTTCTTCCCCGGCGGCGCCAGCAGGCGTGGTGCCGGCGCCGGTGCAGCCTTCTTCCCCGGCGACGGCGGTGCCAAAGCCTCCTTCCAATGACCCGTACGCCCCGGCGACCAGCAACACTCCGGCGGCGGAGGAGCAGAAGGACGGGCTGAACGAGAAGGCGATCAGCGACATCGTGAGGGAGCACAACATGTTCCGCACGAGGGAGCACGTGCCACCCATAGTGTGGAACGCGACGCTGGCGAAGTACGCGCAGGAGTACGCGGATTTGAGGAGAGGGGATTGCCAGCTGGAGCACTCTCATGGCCCCTACGGGGAGAACATGATGTTCGGGACGGGGAAGCAGTGGACGTGGAAGAAGACGGTGGACGAGTGGAGCGACGAGAAGAAGAGCTACGACTACAAATCCAACAGCTGCAAGGCCGGCGCCATGTGCACCCACTACACCGCCATCGTCTGGAAGAACACCACCGCCGTCGGCTGCGGCCGCGTCGTCTGCACCTCCGGCGACACCATCATGGTCTGCAGCTACTGGCCGCCCGGCAACTACGTCGGCGTCAAGCCCTACTAATTCATTCTTCATCATATCGATCGATCCACCACCCCTGCTGCTGCCCTCCATCTCTCACCCATCATCGATCGATCGTCATCCATGCATCCACCATCGTCGTCGTCTCATCTTATTAATAATATATATATGCATCAGATTCTTAATTATTATAACTAATTAATTAATGTTATCTTAACTTGTTAGTGATATGCCCTAGAGGCTATCATAGAGATGATTATATCACACACTATGTTTACATATTTATCCGACTTTGTTCCTTGAAATAGATAAACTTATTATTGGTTAATGAATGTGTGATTCTTTCAT] [+] EMBL AK100940 [GGGAAAAAAAAAGATGGACAAGATGATGCGCACGGTGATCGCCGCCGTCGTGGTCGGCCTCCTCGCCGCGGCCCACACGGCCACCACCGCACCGGAACAATCCTACGGCGGCGCAACGGCGACCGTGGCGCCGAAGCAGCCGGCGGCGGGGGAAGACGTCAACAAGGCCTTGGCGGCGGAGACGGCGGCTGCCGAGGCGGAGGACGCCGCCGAGGAGGAGGACGCCGCGGCCGCTCTGGTCACCGGCTTCACCGCCGGCGCGGCGAACTCCGCGCCGGGGGTGACTGCCGTCATGAAGCCGGTGCTGGAGAAGGCGGACGCCGGGCAATTCTACCAGGACGTGCCATGGATTCCGGATCCCAACGACGAGGGGAATCCTCCCAAGTCTCTGCCGGCGGCGCAGGTCCTGCCGGCCAAGGGCGGCGCTGGCGCGGCAGGATCATCGCCGCCGTCGAAGGAGGTGCAGGTGGATTACTACGCGACGACCCAGCCGAAGAAGCCGGAGGAGCCGCCGACGGTCGCGGCGGTCCAAAAGGACAATTGCGTCCCGCCGGCGGCGCCCAAGCCAGCTGTTCCGGCGACGCCGTCGACGTCTCCTCCTTCGAATAAGGAGTATGCTCCGGCGGCGCCAGGCGTGGTGCCGGTGAACCAGCCTTCTTCCCCGGCGGCGCCAGCAGGCGTGGTGCCGGCGCCGGTGCAGCCTTCTTCCCCGGCGGCGCCAGCAGGCGTGGTGCCGGCGCCGGTGCAGCCTTCTTCCCCGGCGACGGCGGTGCCAAAGCCTCCTTCCAATGACCCGTACGCCCCGGCGACCAGCAACACTCCGGCGGCGGAGGAGCAGAAGGACGGGCTGAACGAGAAGGCGATCAGCGACATCGTGAGGGAGCACAACATGTTCCGCACGAGGGAGCACGTGCCACCCATAGTGTGGAACGCGACGCTGGCGAAGTACGCGCAGGAGTACGCGGATTTGAGGAGAGGGGATTGCCAGCTGGAGCACTCTCATGGCCCCTACGGGGAGAACATGATGTTCGGGACGGGGAAGCAGTGGACGTGGAAGAAGACGGTGGACGAGTGGAGCGACGAGAAGAAGAGCTACGACTACAAATCCAACAGCTGCAAGGCCGGCGCCATGTGCACCCACTACACCGCCATCGTCTGGAAGAACACCACCGCCGTCGGCTGCGGCCGCGTCGTCTGCACCTCCGGCGACACCATCATGGTCTGCAGCTACTGGCCGCCCGGCAACTACGTCGGCGTCAAGCCCTACTAATTCATTCTTCATCATATCGATCGATCCACCACCCCTGCTGCTGCCCTCCATCTCTCACCCATCATCGATCGATCGTCATCCATGCATCCACCATCGTCGTCGTCTCATCTTATTAATAATATATATATGCATCAGATTCTTAATTATTATAACTAATTAATTAATGTTATCTTAACTTGTTAGTGATATGCCCTAGAGGCTATCATAGAGATGATTATATCACACACTATGTTTACATATTTATCCGACTTTGTTCCTTGAAATAGATAAACTTATTATTGGTTAATGAATGTGTGATTCTTTCAT] consensusID : consensus_5580#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 201 fasta sequence [CTCTGCCGGCGGCGCAGGTCCTGCCGGCCAAGGGCGGCGTGGCCGGGCAGGATCATCGCCNCGTCGAAGGAGGTGCAGGTGGATTACTACGCGACGACCCAGCCGAAGAAGCCGGAGAGCCGCCGACGTCGCGCGTCCAAAAGGACAATTGCGTCCGCCGGCNCCAAGCCAGCTGTTCGCGCNTCGAGCTCTCTCTCGATA] [+] EMBL AA750064 [CTCTGCCGGCGGCGCAGGTCCTGCCGGCCAAGGGCGGCGTGGCCGGGCAGGATCATCGCCNCGTCGAAGGAGGTGCAGGTGGATTACTACGCGACGACCCAGCCGAAGAAGCCGGAGAGCCGCCGACGTCGCGCGTCCAAAAGGACAATTGCGTCCGCCGGCNCCAAGCCAGCTGTTCGCGCNTCGAGCTCTCTCTCGATA] [+] EMBL AA750022 [CTCTGCCGGCGGCGCAGGTCCTGCCGGCCAAGGGCGGCGTGGCCGGGCAGGATCATCGCCNCGTCGAAGGAGGTGCAGGTGGATTACTACGCGACGACCCAGCCGAAGAAGCCGGAGAGCCGCCGACGTCGCGCGTCCAAAAGGACAATTGCGTCCGCCGGCNCCAAGCCAGCTGTTCGCGANTCGAGCTCTCTCTCGATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5580#0 GGGAAAAAAAAAGATGGACAAGATGATGCGCACGGTGATCGCCGCCGTCGTGGTCGGCCT 60 consensus_5580#1 ------------------------------------------------------------ consensus_5580#0 CCTCGCCGCGGCCCACACGGCCACCACCGCACCGGAACAATCCTACGGCGGCGCAACGGC 120 consensus_5580#1 ------------------------------------------------------------ consensus_5580#0 GACCGTGGCGCCGAAGCAGCCGGCGGCGGGGGAAGACGTCAACAAGGCCTTGGCGGCGGA 180 consensus_5580#1 ------------------------------------------------------------ consensus_5580#0 GACGGCGGCTGCCGAGGCGGAGGACGCCGCCGAGGAGGAGGACGCCGCGGCCGCTCTGGT 240 consensus_5580#1 ------------------------------------------------------------ consensus_5580#0 CACCGGCTTCACCGCCGGCGCGGCGAACTCCGCGCCGGGGGTGACTGCCGTCATGAAGCC 300 consensus_5580#1 ------------------------------------------------------------ consensus_5580#0 GGTGCTGGAGAAGGCGGACGCCGGGCAATTCTACCAGGACGTGCCATGGATTCCGGATCC 360 consensus_5580#1 ------------------------------------------------------------ consensus_5580#0 CAACGACGAGGGGAATCCTCCCAAGTCTCTGCCGGCGGCGCAGGTCCTGCCGGCCAAGGG 420 consensus_5580#1 --------------------------CTCTGCCGGCGGCGCAGGTCCTGCCGGCCAAGGG 34 ********************************** consensus_5580#0 CGGCGCTGGCGCGGCAGGATCATCGCCGCCGTCGAAGGAGGTGCAGGTGGATTACTACGC 480 consensus_5580#1 CGGCG-TGGCCGGGCAGGATCATCGCCNC-GTCGAAGGAGGTGCAGGTGGATTACTACGC 92 ***** **** *************** * ****************************** consensus_5580#0 GACGACCCAGCCGAAGAAGCCGGAGGAGCCGCCGACGGTCGCGGCGGTCCAAAAGGACAA 540 consensus_5580#1 GACGACCCAGCCGAAGAAGCCGGAG-AGCCGCCGACG-TCGCG--CGTCCAAAAGGACAA 148 ************************* *********** ***** ************** consensus_5580#0 TTGCGTCCCGCCGGCGGCGCCCAAGCCAGCTGTTCCGGCGACGCCGTCGACGTCTCCTCC 600 consensus_5580#1 TTGCGTCC-GCCGGC----NCCAAGCCAGCTGTTC--GCG----CNTCGAGCTCTCTCTC 197 ******** ****** *************** *** * **** **** * consensus_5580#0 TTCGAATAAGGAGTATGCTCCGGCGGCGCCAGGCGTGGTGCCGGTGAACCAGCCTTCTTC 660 consensus_5580#1 GATA-------------------------------------------------------- 201 consensus_5580#0 CCCGGCGGCGCCAGCAGGCGTGGTGCCGGCGCCGGTGCAGCCTTCTTCCCCGGCGGCGCC 720 consensus_5580#1 ------------------------------------------------------------ consensus_5580#0 AGCAGGCGTGGTGCCGGCGCCGGTGCAGCCTTCTTCCCCGGCGACGGCGGTGCCAAAGCC 780 consensus_5580#1 ------------------------------------------------------------ consensus_5580#0 TCCTTCCAATGACCCGTACGCCCCGGCGACCAGCAACACTCCGGCGGCGGAGGAGCAGAA 840 consensus_5580#1 ------------------------------------------------------------ consensus_5580#0 GGACGGGCTGAACGAGAAGGCGATCAGCGACATCGTGAGGGAGCACAACATGTTCCGCAC 900 consensus_5580#1 ------------------------------------------------------------ consensus_5580#0 GAGGGAGCACGTGCCACCCATAGTGTGGAACGCGACGCTGGCGAAGTACGCGCAGGAGTA 960 consensus_5580#1 ------------------------------------------------------------ consensus_5580#0 CGCGGATTTGAGGAGAGGGGATTGCCAGCTGGAGCACTCTCATGGCCCCTACGGGGAGAA 1020 consensus_5580#1 ------------------------------------------------------------ consensus_5580#0 CATGATGTTCGGGACGGGGAAGCAGTGGACGTGGAAGAAGACGGTGGACGAGTGGAGCGA 1080 consensus_5580#1 ------------------------------------------------------------ consensus_5580#0 CGAGAAGAAGAGCTACGACTACAAATCCAACAGCTGCAAGGCCGGCGCCATGTGCACCCA 1140 consensus_5580#1 ------------------------------------------------------------ consensus_5580#0 CTACACCGCCATCGTCTGGAAGAACACCACCGCCGTCGGCTGCGGCCGCGTCGTCTGCAC 1200 consensus_5580#1 ------------------------------------------------------------ consensus_5580#0 CTCCGGCGACACCATCATGGTCTGCAGCTACTGGCCGCCCGGCAACTACGTCGGCGTCAA 1260 consensus_5580#1 ------------------------------------------------------------ consensus_5580#0 GCCCTACTAATTCATTCTTCATCATATCGATCGATCCACCACCCCTGCTGCTGCCCTCCA 1320 consensus_5580#1 ------------------------------------------------------------ consensus_5580#0 TCTCTCACCCATCATCGATCGATCGTCATCCATGCATCCACCATCGTCGTCGTCTCATCT 1380 consensus_5580#1 ------------------------------------------------------------ consensus_5580#0 TATTAATAATATATATATGCATCAGATTCTTAATTATTATAACTAATTAATTAATGTTAT 1440 consensus_5580#1 ------------------------------------------------------------ consensus_5580#0 CTTAACTTGTTAGTGATATGCCCTAGAGGCTATCATAGAGATGATTATATCACACACTAT 1500 consensus_5580#1 ------------------------------------------------------------ consensus_5580#0 GTTTACATATTTATCCGACTTTGTTCCTTGAAATAGATAAACTTATTATTGGTTAATGAA 1560 consensus_5580#1 ------------------------------------------------------------ consensus_5580#0 TGTGTGATTCTTTCAT 1576 consensus_5580#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||