These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5588#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 350 fasta sequence [AGAAAAAATAAAAAAAATATTAGATCAAGGTGAAAAAATCCGAAAAAATAACAACCCCCTCATATTAAGTATAAGCTTTCTTTTCCAAGTGGAATCATTCAAAAACATTGAGCTTTGCTACCCCAAATCCCCTCTCCCAATAATTCAAAAAAAAAGATTTATAAAATACAAAATAAATATTAAAAAAATCTGAAAAAATCGAAAAAATAACTAAGAACTAGATTTTTCAAGCTCGATTCGGTTATTCAAACGCGAAACGGATAAGCGGACTCCAAAAAAGGGGGGGTGGCTCTCGACACATTTGTTCAACTGCTGGAATGAGGAAAAGCTCAATGTCATATATAGGGAGG] [+] EMBL D42472 [AGAAAAAATAAAAAAAATATTAGATCAAGGTGAAAAAATCCGAAAAAATAACAACCCCCTCATATTAAGTATAAGCTTTCTTTTCCAAGTGGAATCATTCAAAAACATTGAGCTTTGCTACCCCAAATCCCCTCTCCCAATAATTCAAAAAAAAAGATTTATAAAATACAAAATAAATATTAAAAAAATCTGAAAAAATCGAAAAAATAACTAAGAACTAGATTTTTCAAGCTCGATTCGGTTATTCAAACGCGAAACGGATAAGCGGACTCCAAAAAAGGGGGGGTGGCTCTCGACACATTTGTTCAACTGCTGGAATGAGGAAAAGCTCAATGTCATATATAGGGAGG] consensusID : consensus_5588#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 145 fasta sequence [AAGGTGAAAAAANNCGAAAAAATNNNNNNNNCNCATATTAAGTATAAGCTTTCTNNTCCAAGTGGAATCATTCAAAAACATTGAGCTTTGCTACCCCAAATCCCCNNNCCCAATAATTCAAAAAAAAANATTTATAAAATCAGAA] [+] EMBL D42287 [AAGGTGAAAAAANNCGAAAAAATNNNNNNNNCNCATATTAAGTATAAGCTTTCTNNTCCAAGTGGAATCATTCAAAAACATTGAGCTTTGCTACCCCAAATCCCCNNNCCCAATAATTCAAAAAAAAANATTTATAAAATCAGAA] consensusID : consensus_5588#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 124 fasta sequence [TTTTACAAGAAAAAATAAAAAAATATTAGATCAAGGTGAAAAAAAACGAAAAAAAAAAAAAAAAACATATTAAGTATAAGCTTTCTTTTCCAAGTTGGAATCATTCAAAAACATTGAGCTTTTT] [+] EMBL D42283 [TTTTACAAGAAAAAATAAAAAAATATTAGATCAAGGTGAAAAAAAACGAAAAAAAAAAAAAAAAACATATTAAGTATAAGCTTTCTTTTCCAAGTTGGAATCATTCAAAAACATTGAGCTTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5588#0 ------AGAAAAAATAAAAAAAATATTAGATCAAGGTGAAAAAATCCGAAAAAATAACAA 54 consensus_5588#1 --------------------------------AAGGTGAAAAAANNCGAAAAAATNNNNN 28 consensus_5588#2 TTTTACAAGAAAAAATAAAAAAATATTAGATCAAGGTGAAAAAAAACGAAAAAAAAAAAA 60 ************ ******** consensus_5588#0 CCCCCTCATATTAAGTATAAGCTTTCTTTTCCAAGT-GGAATCATTCAAAAACATTGAGC 113 consensus_5588#1 NNNCN-CATATTAAGTATAAGCTTTCTNNTCCAAGT-GGAATCATTCAAAAACATTGAGC 86 consensus_5588#2 AAAAA-CATATTAAGTATAAGCTTTCTTTTCCAAGTTGGAATCATTCAAAAACATTGAGC 119 ********************* ******* *********************** consensus_5588#0 TTTGCTACCCCAAATCCCCTCTCCCAATAATTCAAAAAAAAAGATTTATAAAATACAAAA 173 consensus_5588#1 TTTGCTACCCCAAATCCCCNNNCCCAATAATTCAAAAAAAAANATTTATAAAAT-CAGAA 145 consensus_5588#2 TTTTT------------------------------------------------------- 124 *** consensus_5588#0 TAAATATTAAAAAAATCTGAAAAAATCGAAAAAATAACTAAGAACTAGATTTTTCAAGCT 233 consensus_5588#1 ------------------------------------------------------------ consensus_5588#2 ------------------------------------------------------------ consensus_5588#0 CGATTCGGTTATTCAAACGCGAAACGGATAAGCGGACTCCAAAAAAGGGGGGGTGGCTCT 293 consensus_5588#1 ------------------------------------------------------------ consensus_5588#2 ------------------------------------------------------------ consensus_5588#0 CGACACATTTGTTCAACTGCTGGAATGAGGAAAAGCTCAATGTCATATATAGGGAGG 350 consensus_5588#1 --------------------------------------------------------- consensus_5588#2 --------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||