These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5589#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1848 fasta sequence [CACACAGCCAAACTCATCCTCCTTTTTTTTTTTTCTTCCATCCCCTCCCTTGAGAGAGATTGAGATTGAGGCTGCCACCGCCCGCGCGCATCGATCGATTCTACTGGAGTGGAGATCGAGCGAGGATATATAGATCTGGACTGGACTGGAGCTCCGATCAACATACTACTACTACTCGTATATAATAAGCCAAGGAAGGCTAATGGCGTCGATCCGGCGGCCGCACTCACCGGCAAAGCAGCAGCACCTTCTCCGCCACGGACACCTCGGCCCCTTCGCCTCTTCCTCCCCGCCATCCTCGCCGCTCCGCCACTCCTCGTCTTCGTCTTCTCCCAGATCAGCGGCTCATCACCACCACCATCTGCTTGCTGCTGCTGGGCACACCTCCTTCCGCCGCCCGCTCCCTCGCTTCGCCGCCTTCTTCCTCCTCGGCTCCTTCCTCGGCCTCCTCCACTTCCTCTCCCATCTCCCCCGACCCCTGGGCCCCATCCCCAATCCTAATTCCCACCACCGCCACCGCGATCCATTCCCCATCCTCCAACACCCGCACCCGCCATCCACCCCCCACAGCAACCACAAGCTGCTCATCGTCGTCACCCCCACGCGCGCCCGCCCCTCCCAGGCCTACTACCTCACCAGGATGGCCCACACCCTCCGCCTCCTCCACGACTCACCCCTCCTCTGGATCGTCGTCCAGGCCGGTAACCCCACCCCGGAAGCCGCCGCCGCCCTCCGCCGCACCGCCGTCTTGCACCGCTATGTCGGATGCTGCCACAACATCAATGCCTCCGCCCCTGACTTCCGCCCCCACCAGATCAACGCCGCCCTCGACATCGTCGACAACCACCGCCTCGACGGCGTCCTCTACTTCGCCGACGAGGAGGGCGTCTACTCCCTCCACCTCTTCCACCACCTCCGCCAAATCAGGAGGTTTGCCACATGGCCTGTTCCAGAAATCTCTCAACACACAAACGAGGTGGTTCTCCAAGGCCCTGTATGTAAACAGGGCCAGGTTGTGGGATGGCACACAACCCACGACGGGAACAAGCTGCGCAGATTTCATCTTGCCATGTCCGGTTTCGCATTCAACAGCACCATGCTCTGGGATCCCAAGCTCAGGTCCCATTTGGCATGGAATTCGATCAGGCATCCAGAAATGGTGAAAGAAAGTCTCCAAGGAAGCGCGTTTGTAGAGCAGCTAGTGGAGGATGAAAGCCAGATGGAAGGCATACCTGCTGACTGCTCTCAATAATGAACTGGCATGTGCCATTCGGATCTGAAAGTGTTGTCTATCCTAAAGGATGGCGGGTTGCTACAGATCTGGATGTAATTATCCCTCTAAAATAGTATCACCAGCTATGTTCACCAAAGTGCTAACTCCTTTGACAGGCATATACTGTAGAAATTAGGCCTTGGCAAGTGTGCAGAGACATTTATACTTTGGAGAGCATCTCTCGGAAAGGGAAGACTTCTTCAGCTGTTGCTTCATAATTTTGTAGGATTCATAATTGCTTGGACGGCCTCTATCCAAATCCAATCCAAAAACCTTCTCTTTGCCGTGTATATGTTCATGTTGTAGCAATTTGTATTCATTTTTTTGGGTTCAAAAGCCAAACGGCAATACATGTTTCAGGATATTTAATTTAATAGCATTCTTTCTTCTGGCCTGTGCAGATTACTGCCTAAATGGACCTTTCCAAAATTTGGCATTACCAAAATTTTGGCAAGCTGACAGCATTGTCTCGTTTATTCGTGGAATAAGTCAGGTTGAAAATTTAAATTTTGACTGATAAGCATAAGTGAAAAGATGAGGCCCGGTAGGCTAAATGTGATGTTGCCAAATTTTTT] [+] EMBL AK070873 [CACACAGCCAAACTCATCCTCCTTTTTTTTTTTTCTTCCATCCCCTCCCTTGAGAGAGATTGAGATTGAGGCTGCCACCGCCCGCGCGCATCGATCGATTCTACTGGAGTGGAGATCGAGCGAGGATATATAGATCTGGACTGGACTGGAGCTCCGATCAACATACTACTACTACTCGTATATAATAAGCCAAGGAAGGCTAATGGCGTCGATCCGGCGGCCGCACTCACCGGCAAAGCAGCAGCACCTTCTCCGCCACGGACACCTCGGCCCCTTCGCCTCTTCCTCCCCGCCATCCTCGCCGCTCCGCCACTCCTCGTCTTCGTCTTCTCCCAGATCAGCGGCTCATCACCACCACCATCTGCTTGCTGCTGCTGGGCACACCTCCTTCCGCCGCCCGCTCCCTCGCTTCGCCGCCTTCTTCCTCCTCGGCTCCTTCCTCGGCCTCCTCCACTTCCTCTCCCATCTCCCCCGACCCCTGGGCCCCATCCCCAATCCTAATTCCCACCACCGCCACCGCGATCCATTCCCCATCCTCCAACACCCGCACCCGCCATCCACCCCCCACAGCAACCACAAGCTGCTCATCGTCGTCACCCCCACGCGCGCCCGCCCCTCCCAGGCCTACTACCTCACCAGGATGGCCCACACCCTCCGCCTCCTCCACGACTCACCCCTCCTCTGGATCGTCGTCCAGGCCGGTAACCCCACCCCGGAAGCCGCCGCCGCCCTCCGCCGCACCGCCGTCTTGCACCGCTATGTCGGATGCTGCCACAACATCAATGCCTCCGCCCCTGACTTCCGCCCCCACCAGATCAACGCCGCCCTCGACATCGTCGACAACCACCGCCTCGACGGCGTCCTCTACTTCGCCGACGAGGAGGGCGTCTACTCCCTCCACCTCTTCCACCACCTCCGCCAAATCAGGAGGTTTGCCACATGGCCTGTTCCAGAAATCTCTCAACACACAAACGAGGTGGTTCTCCAAGGCCCTGTATGTAAACAGGGCCAGGTTGTGGGATGGCACACAACCCACGACGGGAACAAGCTGCGCAGATTTCATCTTGCCATGTCCGGTTTCGCATTCAACAGCACCATGCTCTGGGATCCCAAGCTCAGGTCCCATTTGGCATGGAATTCGATCAGGCATCCAGAAATGGTGAAAGAAAGTCTCCAAGGAAGCGCGTTTGTAGAGCAGCTAGTGGAGGATGAAAGCCAGATGGAAGGCATACCTGCTGACTGCTCTCAATAATGAACTGGCATGTGCCATTCGGATCTGAAAGTGTTGTCTATCCTAAAGGATGGCGGGTTGCTACAGATCTGGATGTAATTATCCCTCTAAAATAGTATCACCAGCTATGTTCACCAAAGTGCTAACTCCTTTGACAGGCATATACTGTAGAAATTAGGCCTTGGCAAGTGTGCAGAGACATTTATACTTTGGAGAGCATCTCTCGGAAAGGGAAGACTTCTTCAGCTGTTGCTTCATAATTTTGTAGGATTCATAATTGCTTGGACGGCCTCTATCCAAATCCAATCCAAAAACCTTCTCTTTGCCGTGTATATGTTCATGTTGTAGCAATTTGTATTCATTTTTTTGGGTTCAAAAGCCAAACGGCAATACATGTTTCAGGATATTTAATTTAATAGCATTCTTTCTTCTGGCCTGTGCAGATTACTGCCTAAATGGACCTTTCCAAAATTTGGCATTACCAAAATTTTGGCAAGCTGACAGCATTGTCTCGTTTATTCGTGGAATAAGTCAGGTTGAAAATTTAAATTTTGACTGATAAGCATAAGTGAAAAGATGAGGCCCGGTAGGCTAAATGTGATGTTGCCAAATTTTTT] consensusID : consensus_5589#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 423 fasta sequence [GNTCATCATGTTGCCCCTTGCCAACTACTACACGAACCCCCAGATATCAGAGAAGGACAAAAAGAAGTGTACCAATAATGCTGAAAAATACNTCNCTGTAGCTTTCAAACACATGGTTATCNCCAAATGCAATACTGTGACCTTTTCTTGTACCCCCCCCCCCCCCTTCTTGGATTTTGTTTGCGATGCCTTTCTGCATGTAGTGTAACAGCTGAGATGAGATGGTTGTTACTTTGCAGGGAAGCGCGTTTGTAGAGCAGCTAGTGGAGGATGAAAGCCAGATGGAAGGCATACCTGCTGACTGCTCTCAAATAATGAACTGGCATGTGCCATTCGGATCTGAAAGTGTTGTCTATCCTAAAGGATGGCGGGTTGCTACAGATCTGGATGTAATTATCCCTCTAAAATAGTATCACCAGCTAT] [-] EMBL AU032124 [GNTCATCATGTTGCCCCTTGCCAACTACTACACGAACCCCCAGATATCAGAGAAGGACAAAAAGAAGTGTACCAATAATGCTGAAAAATACNTCNCTGTAGCTTTCAAACACATGGTTATCNCCAAATGCAATACTGTGACCTTTTCTTGTACCCCCCCCCCCCCCTTCTTGGATTTTGTTTGCGATGCCTTTCTGCATGTAGTGTAACAGCTGAGATGAGATGGTTGTTACTTTGCAGGGAAGCGCGTTTGTAGAGCAGCTAGTGGAGGATGAAAGCCAGATGGAAGGCATACCTGCTGACTGCTCTCAAATAATGAACTGGCATGTGCCATTCGGATCTGAAAGTGTTGTCTATCCTAAAGGATGGCGGGTTGCTACAGATCTGGATGTAATTATCCCTCTAAAATAGTATCACCAGCTA ] [-] EMBL OSR3319A [ TACTGTGACCTTTNCNTGTACCCCCCCCCCCCCCTTCTTGGATTTTGTTTGCGATGCCTTTCTGCATGTAGTGTAACAGCTGAGATGAGATGGTTGTTACTTTGCAGGGAAGCGCGTTTGTAGAGCAGCTAGTGGAGGATGAAAGCCAGATGGAAGGCATACCTGCTGACTGCTCTCAAATAATGAACTGGCATGTGCCATTCGGATCTGAAAGTGTTGTCTATCCTAAAGGATGGCGGGTTGCTACAGATCTGGATGTAATTATCCCTCTAAAATAGTATCACCAGCTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5589#0 CACACAGCCAAACTCATCCTCCTTTTTTTTTTTTCTTCCATCCCCTCCCTTGAGAGAGAT 60 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 TGAGATTGAGGCTGCCACCGCCCGCGCGCATCGATCGATTCTACTGGAGTGGAGATCGAG 120 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 CGAGGATATATAGATCTGGACTGGACTGGAGCTCCGATCAACATACTACTACTACTCGTA 180 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 TATAATAAGCCAAGGAAGGCTAATGGCGTCGATCCGGCGGCCGCACTCACCGGCAAAGCA 240 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 GCAGCACCTTCTCCGCCACGGACACCTCGGCCCCTTCGCCTCTTCCTCCCCGCCATCCTC 300 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 GCCGCTCCGCCACTCCTCGTCTTCGTCTTCTCCCAGATCAGCGGCTCATCACCACCACCA 360 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 TCTGCTTGCTGCTGCTGGGCACACCTCCTTCCGCCGCCCGCTCCCTCGCTTCGCCGCCTT 420 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 CTTCCTCCTCGGCTCCTTCCTCGGCCTCCTCCACTTCCTCTCCCATCTCCCCCGACCCCT 480 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 GGGCCCCATCCCCAATCCTAATTCCCACCACCGCCACCGCGATCCATTCCCCATCCTCCA 540 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 ACACCCGCACCCGCCATCCACCCCCCACAGCAACCACAAGCTGCTCATCGTCGTCACCCC 600 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 CACGCGCGCCCGCCCCTCCCAGGCCTACTACCTCACCAGGATGGCCCACACCCTCCGCCT 660 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 CCTCCACGACTCACCCCTCCTCTGGATCGTCGTCCAGGCCGGTAACCCCACCCCGGAAGC 720 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 CGCCGCCGCCCTCCGCCGCACCGCCGTCTTGCACCGCTATGTCGGATGCTGCCACAACAT 780 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 CAATGCCTCCGCCCCTGACTTCCGCCCCCACCAGATCAACGCCGCCCTCGACATCGTCGA 840 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 CAACCACCGCCTCGACGGCGTCCTCTACTTCGCCGACGAGGAGGGCGTCTACTCCCTCCA 900 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 CCTCTTCCACCACCTCCGCCAAATCAGGAGGTTTGCCACATGGCCTGTT-CCAGAAATCT 959 consensus_5589#1 ------------------------------GNTCATCATGTTGCCCCTTGCCAACTACTA 30 * * ** * *** ** *** * consensus_5589#0 CTC-AACACACAAACGAGGTGGTTCTCCAAGGCCCTGTATGTAAACAGGGCCAGGTTGTG 1018 consensus_5589#1 CACGAACCCCCAGATATCAGAGAAGGACAAAAAGAAGTGTACCAATAATGCTGAAAAATA 90 * * *** * ** * * *** ** * ** * ** * consensus_5589#0 GGATGGCACACAACCCACGACGGGAACAAGCTGCGCAGATTTCATCTTGCCATGTCCGGT 1078 consensus_5589#1 CNTCNCTGT--AGCTTTCAAACACATGGTTATCNCCAAATGCAATACTGTGACCTTT--T 146 * * * * * * ** ** ** ** * * * consensus_5589#0 TTCGCATTCAACAGCACCATGCTCTGGGATCCCAAGCTCAGGTCCCATTTGGCATGGAAT 1138 consensus_5589#1 CTTGTACCCC-CCCCCCCCCCTTCTTGGATTTTGT-TTGCGATGCCTTTCTGCATGTAGT 204 * * * * * * ** *** **** * * * ** ** ***** * * consensus_5589#0 TCGATCAGGCATCCAGAAATGGTGAAAGAAAGTCTCCAAGGAAGCGCGTTTGTAGAGCAG 1198 consensus_5589#1 GTAA-CAGCTG---AGATGAGATGGTTGTTACTTTGCAGGGAAGCGCGTTTGTAGAGCAG 260 * *** *** * ** * * * * ** ********************* consensus_5589#0 CTAGTGGAGGATGAAAGCCAGATGGAAGGCATACCTGCTGACTGCTCTCAA-TAATGAAC 1257 consensus_5589#1 CTAGTGGAGGATGAAAGCCAGATGGAAGGCATACCTGCTGACTGCTCTCAAATAATGAAC 320 *************************************************** ******** consensus_5589#0 TGGCATGTGCCATTCGGATCTGAAAGTGTTGTCTATCCTAAAGGATGGCGGGTTGCTACA 1317 consensus_5589#1 TGGCATGTGCCATTCGGATCTGAAAGTGTTGTCTATCCTAAAGGATGGCGGGTTGCTACA 380 ************************************************************ consensus_5589#0 GATCTGGATGTAATTATCCCTCTAAAATAGTATCACCAGCTATGTTCACCAAAGTGCTAA 1377 consensus_5589#1 GATCTGGATGTAATTATCCCTCTAAAATAGTATCACCAGCTAT----------------- 423 ******************************************* consensus_5589#0 CTCCTTTGACAGGCATATACTGTAGAAATTAGGCCTTGGCAAGTGTGCAGAGACATTTAT 1437 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 ACTTTGGAGAGCATCTCTCGGAAAGGGAAGACTTCTTCAGCTGTTGCTTCATAATTTTGT 1497 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 AGGATTCATAATTGCTTGGACGGCCTCTATCCAAATCCAATCCAAAAACCTTCTCTTTGC 1557 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 CGTGTATATGTTCATGTTGTAGCAATTTGTATTCATTTTTTTGGGTTCAAAAGCCAAACG 1617 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 GCAATACATGTTTCAGGATATTTAATTTAATAGCATTCTTTCTTCTGGCCTGTGCAGATT 1677 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 ACTGCCTAAATGGACCTTTCCAAAATTTGGCATTACCAAAATTTTGGCAAGCTGACAGCA 1737 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 TTGTCTCGTTTATTCGTGGAATAAGTCAGGTTGAAAATTTAAATTTTGACTGATAAGCAT 1797 consensus_5589#1 ------------------------------------------------------------ consensus_5589#0 AAGTGAAAAGATGAGGCCCGGTAGGCTAAATGTGATGTTGCCAAATTTTTT 1848 consensus_5589#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||