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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5608#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1811 fasta sequence
[GGAACTACCACGCTCGATCTTCCGCTGCGCGCGCCGATTTGAGCTTTACGCCGGCCTACCCAATTACCCAATCCAGCAAGAACAGCATATACTCGTCCCGCCCATGGCAGGATCGACTCTGTTCCGATGGCTCTTCTTACTGCTGGCCATCGTGTCGCTTGCCGCGGCGGATAGCGGCAGCGGCGAAGCAGAGACCACCGTCCCCGGACAAATTCGCCTGAGCTGCGGCGCGTCTGCCTCCGCCACCGACGGGGACGGCCGGGCGTGGGACGGTGACGCCGTGTCCACGTTCGCGCCGTCGGTGACCGGCGTCGCGGCCGACGCGTCGTACCAGGACCCCTCGCTGCCTTCCCCCGTGCCGTACATGACGGCGCGCGTGTTCAGCTCCAGCTACACCTACTCCTTCCCCGTCAAGCCCGGCCGCGTGTTCCTCCGTCTCTACTTCTACCCGTCCGCCTACGGCAACCTCGGCGCCGCCGCCGCCGCCGCGGACGCGCTGTTCGGCGTCACCGCGGGCGGCATCACGCTCCTCCGCGACTTCAACGCGTCGCAGACCGCGCTCGCGGTCGGCTACGCGTACATCGTCCGCGAGTTCTCGCTGAACGTCAGCTCCGGCGCCACGAGCCTCAACGTCACCTTCGCCCCCTCGCCGCGTGGCGCCCCCGGCCACGGGTCCCACCACTACGCGTTCGTCAACGGCATCGAGGTCGTGCCCACGCCGGACATGTTCACGACGCCGGTGCCCGCCTTCGCCAACGGCGGGCGCCCGAACCCGATGCCCCTCCGCGCCGACACGGCGTTCCAGACGATGTACCGCCTCAACGTCGGCGGCGAGGCCATCACCCCACGGGACGACGCCGGCGGTTTCTACCGCACGTGGGACAACGACGCGCCCTACATCTTCGGCGCGGCCTTCGGTGTGACCTTCGCGAAGGACAGCAACGTCAGCGTCCGGTACAACCCGCCGTCGGTGCCGAAGTACGCCGCACCGGAGGACGTGTACGCGACGGCGAGGTCGATGGGCCCGAACGCGCAGATCAACCTCAACTACAACCTCACCTGGATCCTCCCCGTCGACGCCGGCTTCTACTACCTCCTCAGGTTCCACTTCTGCGAGATCCAGTACCCGATAACGAAGGTGAACCAGAGATCATTCTTCATCTACATCAACAACCAGACGGCGCAGTCTCAGATGGACGTGATAGTGTGGAGCGGAGGGATCGGGAGGGCGGTGTACACGGATTACCTCGTCGTCACGGCGGGCTCCGGCCAGATGGATCTGCTGGTGGCGCTGCACCCGGACCTCAGCTCCAGGCCGGAGTACTTCGACGCCATACTCAACGGCCTCGAGGTGTTCAAGCTCCACAAGTACGGAACCCACAGCCTTGCCGGGCCAAACCCGCCGATCCCGCTGAAGCAGGTATTCAGCACGGTGGACGGAAGCAGATCGGAGTCCAGGAAGAAGAGCGTCGTCTGCGCCGCCGTCGGCGGTGTGGCCGCCGGTTGCTTCCTTGCGGTGTTGGTTGCCTTCGCCGTCGCGTGGGCTGTTCGCAGGAGGCAGAGGAAGGCCGCGGCGGAGAAACCGGCTGATGGGCTTCTTGGCCCAACAAAAGGCTCCGCCCTTTATGACCCGGTCCAAAAATAAACAGGCCAATTTTTTAAGCCTTTTGTTTTGATAATATTATAGGGTATGTATAGCTATAATTGGGTTAACATGAAAGAATTATAAATGGGCCCAAAAACATCACATGCTTTGGCAATTTTTCAAGGAGAGAACTATATATTACCTCCCTTAACTAAAAAAAAAAAAA]
[+] EMBL AK106447 [GGAACTACCACGCTCGATCTTCCGCTGCGCGCGCCGATTTGAGCTTTACGCCGGCCTACCCAATTACCCAATCCAGCAAGAACAGCATATACTCGTCCCGCCCATGGCAGGATCGACTCTGTTCCGATGGCTCTTCTTACTGCTGGCCATCGTGTCGCTTGCCGCGGCGGATAGCGGCAGCGGCGAAGCAGAGACCACCGTCCCCGGACAAATTCGCCTGAGCTGCGGCGCGTCTGCCTCCGCCACCGACGGGGACGGCCGGGCGTGGGACGGTGACGCCGTGTCCACGTTCGCGCCGTCGGTGACCGGCGTCGCGGCCGACGCGTCGTACCAGGACCCCTCGCTGCCTTCCCCCGTGCCGTACATGACGGCGCGCGTGTTCAGCTCCAGCTACACCTACTCCTTCCCCGTCAAGCCCGGCCGCGTGTTCCTCCGTCTCTACTTCTACCCGTCCGCCTACGGCAACCTCGGCGCCGCCGCCGCCGCCGCGGACGCGCTGTTCGGCGTCACCGCGGGCGGCATCACGCTCCTCCGCGACTTCAACGCGTCGCAGACCGCGCTCGCGGTCGGCTACGCGTACATCGTCCGCGAGTTCTCGCTGAACGTCAGCTCCGGCGCCACGAGCCTCAACGTCACCTTCGCCCCCTCGCCGCGTGGCGCCCCCGGCCACGGGTCCCACCACTACGCGTTCGTCAACGGCATCGAGGTCGTGCCCACGCCGGACATGTTCACGACGCCGGTGCCCGCCTTCGCCAACGGCGGGCGCCCGAACCCGATGCCCCTCCGCGCCGACACGGCGTTCCAGACGATGTACCGCCTCAACGTCGGCGGCGAGGCCATCACCCCACGGGACGACGCCGGCGGTTTCTACCGCACGTGGGACAACGACGCGCCCTACATCTTCGGCGCGGCCTTCGGTGTGACCTTCGCGAAGGACAGCAACGTCAGCGTCCGGTACAACCCGCCGTCGGTGCCGAAGTACGCCGCACCGGAGGACGTGTACGCGACGGCGAGGTCGATGGGCCCGAACGCGCAGATCAACCTCAACTACAACCTCACCTGGATCCTCCCCGTCGACGCCGGCTTCTACTACCTCCTCAGGTTCCACTTCTGCGAGATCCAGTACCCGATAACGAAGGTGAACCAGAGATCATTCTTCATCTACATCAACAACCAGACGGCGCAGTCTCAGATGGACGTGATAGTGTGGAGCGGAGGGATCGGGAGGGCGGTGTACACGGATTACCTCGTCGTCACGGCGGGCTCCGGCCAGATGGATCTGCTGGTGGCGCTGCACCCGGACCTCAGCTCCAGGCCGGAGTACTTCGACGCCATACTCAACGGCCTCGAGGTGTTCAAGCTCCACAAGTACGGAACCCACAGCCTTGCCGGGCCAAACCCGCCGATCCCGCTGAAGCAGGTATTCAGCACGGTGGACGGAAGCAGATCGGAGTCCAGGAAGAAGAGCGTCGTCTGCGCCGCCGTCGGCGGTGTGGCCGCCGGTTGCTTCCTTGCGGTGTTGGTTGCCTTCGCCGTCGCGTGGGCTGTTCGCAGGAGGCAGAGGAAGGCCGCGGCGGAGAAACCGGCTGATGGGCTTCTTGGCCCAACAAAAGGCTCCGCCCTTTATGACCCGGTCCAAAAATAAACAGGCCAATTTTTTAAGCCTTTTGTTTTGATAATATTATAGGGTATGTATAGCTATAATTGGGTTAACATGAAAGAATTATAAATGGGCCCAAAAACATCACATGCTTTGGCAATTTTTCAAGGAGAGAACTATATATTACC ]
[+] EMBL AU174982 [ CTCCACAAGTACGGAACCCACAGCCTTGCCGGGCCAAACCCGCCGATCCCGCTGAAGCAGGTATTCAGCACGGTGGACGGAAGCAGATCGGAGTCCAGGAAGAAGAGCGTCGTCTGCNCCGCCGTCGGCGTNGTGGCCGCCGGTTGCTTCCTTGCGGTGTTGGTTGCCTTCGCCGTCGCGTGGGCTGTTCGCAGGAGGCAGAGGAAGGCCGCGGCGGAGAAACCGGCTGATGGGCTTCTTGGCCCAACAAAAGGCTCCGCCCTTTATGACCCGGTCCAAAAATAAACAGGCCAATTTTTTAAGCCTTTTGTTTTGATAATATTATAGGGTATGTATAGCTATAATTGGGTTAACATGAAAGAATTATAAATGGGCCCAAAAACATCACATGCTTTGGCAATTTTTCAAGGAGAGAACTATATATTACCTCCCTTAACTAAAAAAAAAAAAA]
consensusID : consensus_5608#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence
[ATGGAATTTTCTGTGNGCTGCTGATCACCTCGGACTTCAGTTCAGGCCGGATGTATTGTTGACCCCATTATTCTATCGGCCTCTCGAGGTGTTTCAAGCTCCACAATTCTGGAACCCTACATACCTTGTCTCGGGCCAAACCCTCCGATCCCGCTGATAGTTCAGGTATTCATCACGGTGGTACGGAATCAGATCGGTAGTCCAGGTAAGAAAGAGCNTCGTTGCTCCCCTTCGGCGGTGTGCCCCGGTTGCTTCCTGCGGTGTGTGGTGCCTTCCGTCGCGTGGGCTGTTCCCAGGAGGCAGNGGAAGGCCTGCGGCGGAGAANACCGGCTGATGTGCTTCTTGGCCCCACNAAAGGCTCCCCCCTTTATGACCCGGTCCCAAAATNAACAGGCCCATTTTTTAAGCCTTTTGTTTTGATAATATTATAGGGTAAGTAAAGCTATAATTGGGTAACATGAAAGAATTANAAAGGGGTCCCAAAAAAAAAA]
[+] EMBL BI805910 [ATGGAATTTTCTGTGNGCTGCTGATCACCTCGGACTTCAGTTCAGGCCGGATGTATTGTTGACCCCATTATTCTATCGGCCTCTCGAGGTGTTTCAAGCTCCACAATTCTGGAACCCTACATACCTTGTCTCGGGCCAAACCCTCCGATCCCGCTGATAGTTCAGGTATTCATCACGGTGGTACGGAATCAGATCGGTAGTCCAGGTAAGAAAGAGCNTCGTTGCTCCCCTTCGGCGGTGTGCCCCGGTTGCTTCCTGCGGTGTGTGGTGCCTTCCGTCGCGTGGGCTGTTCCCAGGAGGCAGNGGAAGGCCTGCGGCGGAGAANACCGGCTGATGTGCTTCTTGGCCCCACNAAAGGCTCCCCCCTTTATGACCCGGTCCCAAAATNAACAGGCCCATTTTTTAAGCCTTTTGTTTTGATAATATTATAGGGTAAGTAAAGCTATAATTGGGTAACATGAAAGAATTANAAAGGGGTCCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5608#0 GGAACTACCACGCTCGATCTTCCGCTGCGCGCGCCGATTTGAGCTTTACGCCGGCCTACC 60
consensus_5608#1 ------------------------------------------------------------
consensus_5608#0 CAATTACCCAATCCAGCAAGAACAGCATATACTCGTCCCGCCCATGGCAGGATCGACTCT 120
consensus_5608#1 ------------------------------------------------------------
consensus_5608#0 GTTCCGATGGCTCTTCTTACTGCTGGCCATCGTGTCGCTTGCCGCGGCGGATAGCGGCAG 180
consensus_5608#1 ------------------------------------------------------------
consensus_5608#0 CGGCGAAGCAGAGACCACCGTCCCCGGACAAATTCGCCTGAGCTGCGGCGCGTCTGCCTC 240
consensus_5608#1 ------------------------------------------------------------
consensus_5608#0 CGCCACCGACGGGGACGGCCGGGCGTGGGACGGTGACGCCGTGTCCACGTTCGCGCCGTC 300
consensus_5608#1 ------------------------------------------------------------
consensus_5608#0 GGTGACCGGCGTCGCGGCCGACGCGTCGTACCAGGACCCCTCGCTGCCTTCCCCCGTGCC 360
consensus_5608#1 ------------------------------------------------------------
consensus_5608#0 GTACATGACGGCGCGCGTGTTCAGCTCCAGCTACACCTACTCCTTCCCCGTCAAGCCCGG 420
consensus_5608#1 ------------------------------------------------------------
consensus_5608#0 CCGCGTGTTCCTCCGTCTCTACTTCTACCCGTCCGCCTACGGCAACCTCGGCGCCGCCGC 480
consensus_5608#1 ------------------------------------------------------------
consensus_5608#0 CGCCGCCGCGGACGCGCTGTTCGGCGTCACCGCGGGCGGCATCACGCTCCTCCGCGACTT 540
consensus_5608#1 ------------------------------------------------------------
consensus_5608#0 CAACGCGTCGCAGACCGCGCTCGCGGTCGGCTACGCGTACATCGTCCGCGAGTTCTCGCT 600
consensus_5608#1 ------------------------------------------------------------
consensus_5608#0 GAACGTCAGCTCCGGCGCCACGAGCCTCAACGTCACCTTCGCCCCCTCGCCGCGTGGCGC 660
consensus_5608#1 ------------------------------------------------------------
consensus_5608#0 CCCCGGCCACGGGTCCCACCACTACGCGTTCGTCAACGGCATCGAGGTCGTGCCCACGCC 720
consensus_5608#1 ------------------------------------------------------------
consensus_5608#0 GGACATGTTCACGACGCCGGTGCCCGCCTTCGCCAACGGCGGGCGCCCGAACCCGATGCC 780
consensus_5608#1 ------------------------------------------------------------
consensus_5608#0 CCTCCGCGCCGACACGGCGTTCCAGACGATGTACCGCCTCAACGTCGGCGGCGAGGCCAT 840
consensus_5608#1 ------------------------------------------------------------
consensus_5608#0 CACCCCACGGGACGACGCCGGCGGTTTCTACCGCACGTGGGACAACGACGCGCCCTACAT 900
consensus_5608#1 ------------------------------------------------------------
consensus_5608#0 CTTCGGCGCGGCCTTCGGTGTGACCTTCGCGAAGGACAGCAACGTCAGCGTCCGGTACAA 960
consensus_5608#1 ------------------------------------------------------------
consensus_5608#0 CCCGCCGTCGGTGCCGAAGTACGCCGCACCGGAGGACGTGTACGCGACGGCGAGGTCGAT 1020
consensus_5608#1 ------------------------------------------------------------
consensus_5608#0 GGGCCCGAACGCGCAGATCAACCTCAACTACAACCTCACCTGGATCCTCCCCGTCGACGC 1080
consensus_5608#1 ------------------------------------------------------------
consensus_5608#0 CGGCTTCTACTACCTCCTCAGGTTCCACTTCTGCGAGATCCAGTACCCGATAACGAAGGT 1140
consensus_5608#1 ------------------------------------------------------------
consensus_5608#0 GAACCAGAGATCATTCTTCATCTACATCAACAACCAGACGGCGCAGTCTCAGATGGACGT 1200
consensus_5608#1 ------------------------------------------------------------
consensus_5608#0 GATAGTGTGGAGCGGAGGGATCGGGAGGGCGGTGTACACGGATTACCTCGTCGTCACGGC 1260
consensus_5608#1 ------------------------------------------------------------
consensus_5608#0 GGGCTCCGGCCAGATGGATCTGCTGGTGGCGCTGCACC-CGGACCTCAGCTCCAGGCCGG 1319
consensus_5608#1 ---------ATGGAATTTTCTGTGNGCTGCTGATCACCTCGGACTTCAGTTC-AGGCCGG 50
** **** * ** **** ***** **** ** *******
consensus_5608#0 A-GTACT-TCGACGCCAT-ACTCAA-CGGCCTC--GAGGTGTT-CAAGCTCCACAAGTAC 1372
consensus_5608#1 ATGTATTGTTGACCCCATTATTCTATCGGCCTCTCGAGGTGTTTCAAGCTCCACAATTCT 110
* *** * * *** **** * ** * ******* ******** ************ *
consensus_5608#0 GGAACCC-ACA-GCCTTGCC--GGGCCAAACCCGCCGATCCCGCTGAAG---CAGGTATT 1425
consensus_5608#1 GGAACCCTACATACCTTGTCTCGGGCCAAACCCTCCGATCCCGCTGATAGTTCAGGTATT 170
******* *** ***** * *********** ************* ********
consensus_5608#0 CAGCACGGTGG-ACGGAAGCAGATCGG-AGTCCAGG--AAGAAGAGCGTCGTCTGCGCCG 1481
consensus_5608#1 CATCACGGTGGTACGGAATCAGATCGGTAGTCCAGGTAAGAAAGAGCNTCGT-TGCTCC- 228
** ******** ****** ******** ******** * ****** **** *** **
consensus_5608#0 CCGTCGGCGGTGTGGCCGCCGGTTGCTTCCTTGCGGTGTTGGTTGCCTTCGCCGTCGCGT 1541
consensus_5608#1 CCTTCGGCGGTGTGCC--CCGGTTGCTTCCT-GCGGTGTGTGGTGCCTT--CCGTCGCGT 283
** *********** * ************* ******* * ****** *********
consensus_5608#0 GGGCTGTTCGCAGGAGGCAGAGGAAGGCC-GCGGCGGAGAAA-CCGGCTGATGGGCTTCT 1599
consensus_5608#1 GGGCTGTTCCCAGGAGGCAGNGGAAGGCCTGCGGCGGAGAANACCGGCTGATGTGCTTCT 343
********* ********** ******** *********** ********** ******
consensus_5608#0 TGGCCCAACAAAAGGCTCCGCCCTTTATGACCCGGTCCAAAAATAAACAGGCCAATTTTT 1659
consensus_5608#1 TGGCCCCACNAAAGGCTCCCCCCTTTATGACCCGGTCCCAAAATNAACAGGCCCATTTTT 403
****** ** ********* ****************** ***** ******** ******
consensus_5608#0 TAAGCCTTTTGTTTTGATAATATTATAGGGTATGTATAGCTATAATTGGGTTAACATGAA 1719
consensus_5608#1 TAAGCCTTTTGTTTTGATAATATTATAGGGTAAGTAAAGCTATAATTGGGT-AACATGAA 462
******************************** *** ************** ********
consensus_5608#0 AGAATTATAAATGGGCCCAAAAACATCACATGCTTTGGCAATTTTTCAAGGAGAGAACTA 1779
consensus_5608#1 AGAATTANAAAGGGGTCCCAAAAAAAAAA------------------------------- 491
******* *** *** ** **** * *
consensus_5608#0 TATATTACCTCCCTTAACTAAAAAAAAAAAAA 1811
consensus_5608#1 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||