Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5610 cluster # 5610       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5610#0 length = 743 sequences # 2  
consensus_5610#1 length = 738 sequences # 1  

consensusID : consensus_5610#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 743
fasta sequence
                              [CTTTTTTTTTGGACGAAATTTGATTCTAAAATTCCCATTGCCCAAAGATATCAAAGTAGAACAGCAGCAACACGAACAAATTCGGTACAATGTATTTGCAGATACTCTATACAACAAATGGCCAAACTGCTCACGAGGCAGCCCTGCTTATGATGCATCTCCACAACACCAACAGAGCTTAAGAGCATTTTTGGTTGAGCAAGTGTCAAGCCCTAAGCATGCCAATTTCAGCTATTCTCTACATCATATTACAGAAGGCTTTGTGAACACAACACGGATGGAATGCACCTAGATAATCCAATTAACCCATTTGCCTCGGGTCTTCTACTGCAGGGATGAACACAATATGTTGCCATTCAAAGCAGCAGACCACCTGCAACTCCACTAGTCCACTGACATTTTTTTAGGATCATGCAAGGAATCATCAACGATTCATGGTGATCGAATTTCACAACGAGCAACGAAGGTTTATTACCCAGGTGGTGCATTAGGATCGCTCCTCCGACCTTGATCTTACAAATCTCCGGCGACTCCTTGGTCTTTGAACATCTTCATCTAGGTTTTCCTCCTCATCGTCCTCGTCCTCGTCTTCATATTGGAGACCTAGTAAGTTCTCTCCCCATAAATAACGGCGCCTCTGCCTTCTCAGGCCCCTCGATGAGCCTCTTATCTCATCTCCTGATCTCATCGGACTACTACTGATCATATGGAACAGAAAGAATGTTGTCCACAAAGATCCACTT]

[+] EMBL CB641829             [CTTTTTTTTTGGACGAAATTTGATTCTAAAATTCCCATTGCCCAAAGATATCAAAGTAGAACAGCAGCAACACGAACAAATTCGGTACAATGTATTTGCAGATACTCTATACAACAAATGGCCAAACTGCTCACGAGGCAGCCCTGCTTATGATGCATCTCCACAACACCAACAGAGCTTAAGAGCATTTTTGGTTGAGCAAGTGTCAAGCCCTAAGCATGCCAATTTCAGCTATTCTCTACATCATATTACAGAAGGCTTTGTGAACACAACACGGATGGAATGCACCTAGATAATCCAATTAACCCATTTGCCTCGGGTCTTCTACTGCAGGGATGAACACAATATGTTGCCATTCAAAGCAGCAGACCACCTGCAACTCCACTAGTCCACTGACATTTTTTTAGGATCATGCAAGGAATCATCAACGATTCATGGTGATCGAATTTCACAACGAGCAACGAAGGTTTATTACCCAGGTGGTGCATTAGGATCGCTCCTCCGACCTTGATCTTACAAATCTCCGGCGACTCCTTGGTCTTTGAACATCTTCATCTAGGTTTTCCTCCTCATCGTCCTCGTCCTCGTCTTCATATTGGAGACCTAGTAAGTTCTCTCCCCATAAATAACGGCGCCTCTGCCTTCTCAGGCCCCTCGATGAGCCTCTTATCTCATCTCCTGATCTCATCGGACTACTACTGATCATATGGAACAGAAAGAATGTTGTCCACAAAGATCCACTT]
[-] EMBL AK059167             [                    TGATTCTAAAATTCCCATTGAACAAAGATATCAAAGTAGAACAGCAGCAACACGAACAAATTCGGTACAATGTATTTGCAGATACTCTATACAACAAATGGCCAAACTGCTCACGAGGCAGCCCTGCTTATGATGCATCTCCACAACACCAACAGAGCTTAAGAGCATTTTTGGTTGAGCAAGTGTCAAGCCCTAAGCATGCCAATTTCAGCTATTCTCTACATCATATTACAGAAGGCTTTGTGAACACAACACGGATGGAATGCACCTAGATAATCCAATTAACCCATTTGCCTCGGGTCTTCTACTGCAGGGATGAACACAATATGTTGCCATTCAAAGCAGCAGACCACCTGCAACTCCACTAGTCCACTGACATTTTTTTAGGATCATGCAAGGAATCATCAACGATTCATGGTGATCGAATTTCACAACGAGCAACGAAGGTTTATTACCCAGGTGGTGCATTAGGATCGCTCCTCCGACCTTGATCTTACAAATCTCCGGCGACTCCTTGGTCTTTttttt                                                                                                                                                                                                   ]


>consensus_5610#0 CTTTTTTTTTGGACGAAATTTGATTCTAAAATTCCCATTGCCCAAAGATATCAAAGTAGA ACAGCAGCAACACGAACAAATTCGGTACAATGTATTTGCAGATACTCTATACAACAAATG GCCAAACTGCTCACGAGGCAGCCCTGCTTATGATGCATCTCCACAACACCAACAGAGCTT AAGAGCATTTTTGGTTGAGCAAGTGTCAAGCCCTAAGCATGCCAATTTCAGCTATTCTCT ACATCATATTACAGAAGGCTTTGTGAACACAACACGGATGGAATGCACCTAGATAATCCA ATTAACCCATTTGCCTCGGGTCTTCTACTGCAGGGATGAACACAATATGTTGCCATTCAA AGCAGCAGACCACCTGCAACTCCACTAGTCCACTGACATTTTTTTAGGATCATGCAAGGA ATCATCAACGATTCATGGTGATCGAATTTCACAACGAGCAACGAAGGTTTATTACCCAGG TGGTGCATTAGGATCGCTCCTCCGACCTTGATCTTACAAATCTCCGGCGACTCCTTGGTC TTTGAACATCTTCATCTAGGTTTTCCTCCTCATCGTCCTCGTCCTCGTCTTCATATTGGA GACCTAGTAAGTTCTCTCCCCATAAATAACGGCGCCTCTGCCTTCTCAGGCCCCTCGATG AGCCTCTTATCTCATCTCCTGATCTCATCGGACTACTACTGATCATATGGAACAGAAAGA ATGTTGTCCACAAAGATCCACTT



consensusID : consensus_5610#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 738
fasta sequence
                              [CCTCTTTTTTTTTTTTTTTTTTTTTTGAACAAAGATATCAAAGTACAACAGCAGCAACACGAACAAATTCGGTACAATGTATTTGCAGATACTCTATATAACAAATGGCCAAACTGCTCACGAGGCAGCCCTGCTTATGATGCATCTCCACAACACCAACAGAGCTTAAGAGCATTTTTGCTTGAGCAAGTGTCAAGCCCTAAGCATGCCAATTTCAGCTATTCTCTACATCATATTACAGAAGGCTTTGTGAACACAACACGGATGGAATGCACCTAAATAATCCAATTAACCCATTTGCCTCGGGTCTTCTACTGCAGGGATGAACACAATATGTTGCCATTCAAAGCAGCAGACCACCTGCAACTCCACTAGTCCACTGACATTTTTTTAGGATCATGCAAGGAATCATCAACGATTCATGGTGATCGAATTTCACAACGAGCAACGAAGGTTTATTACCCAGGTGGTGCATTAGGATCGCTCCTCCGACCTTGATCTTACAAATCTCCGGCGACTCCTTGGTCTTTGAACATCTTCATCTAGGTTTTCCTCCTCATCGTCCTCGTCCTCGTCTTCATATTGGAGACCTAGTAAGTTCTCTCCCCATAAATAACGGCGCCTCTGCCTTCTCAGGCCCCTCGATGAGCCTCTTATCTCATCTCCTGATCTCATCGGACTACTACTGATCATATGGAACAGAAAGAATGTTGTCAACAAAGATCCACTTGGTTCATT]

[+] EMBL CB623288             [CCTCTTTTTTTTTTTTTTTTTTTTTTGAACAAAGATATCAAAGTACAACAGCAGCAACACGAACAAATTCGGTACAATGTATTTGCAGATACTCTATATAACAAATGGCCAAACTGCTCACGAGGCAGCCCTGCTTATGATGCATCTCCACAACACCAACAGAGCTTAAGAGCATTTTTGCTTGAGCAAGTGTCAAGCCCTAAGCATGCCAATTTCAGCTATTCTCTACATCATATTACAGAAGGCTTTGTGAACACAACACGGATGGAATGCACCTAAATAATCCAATTAACCCATTTGCCTCGGGTCTTCTACTGCAGGGATGAACACAATATGTTGCCATTCAAAGCAGCAGACCACCTGCAACTCCACTAGTCCACTGACATTTTTTTAGGATCATGCAAGGAATCATCAACGATTCATGGTGATCGAATTTCACAACGAGCAACGAAGGTTTATTACCCAGGTGGTGCATTAGGATCGCTCCTCCGACCTTGATCTTACAAATCTCCGGCGACTCCTTGGTCTTTGAACATCTTCATCTAGGTTTTCCTCCTCATCGTCCTCGTCCTCGTCTTCATATTGGAGACCTAGTAAGTTCTCTCCCCATAAATAACGGCGCCTCTGCCTTCTCAGGCCCCTCGATGAGCCTCTTATCTCATCTCCTGATCTCATCGGACTACTACTGATCATATGGAACAGAAAGAATGTTGTCAACAAAGATCCACTTGGTTCATT]


>consensus_5610#1 CCTCTTTTTTTTTTTTTTTTTTTTTTGAACAAAGATATCAAAGTACAACAGCAGCAACAC GAACAAATTCGGTACAATGTATTTGCAGATACTCTATATAACAAATGGCCAAACTGCTCA CGAGGCAGCCCTGCTTATGATGCATCTCCACAACACCAACAGAGCTTAAGAGCATTTTTG CTTGAGCAAGTGTCAAGCCCTAAGCATGCCAATTTCAGCTATTCTCTACATCATATTACA GAAGGCTTTGTGAACACAACACGGATGGAATGCACCTAAATAATCCAATTAACCCATTTG CCTCGGGTCTTCTACTGCAGGGATGAACACAATATGTTGCCATTCAAAGCAGCAGACCAC CTGCAACTCCACTAGTCCACTGACATTTTTTTAGGATCATGCAAGGAATCATCAACGATT CATGGTGATCGAATTTCACAACGAGCAACGAAGGTTTATTACCCAGGTGGTGCATTAGGA TCGCTCCTCCGACCTTGATCTTACAAATCTCCGGCGACTCCTTGGTCTTTGAACATCTTC ATCTAGGTTTTCCTCCTCATCGTCCTCGTCCTCGTCTTCATATTGGAGACCTAGTAAGTT CTCTCCCCATAAATAACGGCGCCTCTGCCTTCTCAGGCCCCTCGATGAGCCTCTTATCTC ATCTCCTGATCTCATCGGACTACTACTGATCATATGGAACAGAAAGAATGTTGTCAACAA AGATCCACTTGGTTCATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5610#0      CTTTTTTTTTGGACGAAATTTGATTCTAAAATTCCCATTGCCCAAAGATATCAAAGTAGA 60
consensus_5610#1      -------------CCTCTTTTTTTTTTTTTTTTTTTTTTGAACAAAGATATCAAAGTACA 47
                                   *    ***  ** *    **    ***  **************** *

consensus_5610#0      ACAGCAGCAACACGAACAAATTCGGTACAATGTATTTGCAGATACTCTATACAACAAATG 120
consensus_5610#1      ACAGCAGCAACACGAACAAATTCGGTACAATGTATTTGCAGATACTCTATATAACAAATG 107
                      *************************************************** ********

consensus_5610#0      GCCAAACTGCTCACGAGGCAGCCCTGCTTATGATGCATCTCCACAACACCAACAGAGCTT 180
consensus_5610#1      GCCAAACTGCTCACGAGGCAGCCCTGCTTATGATGCATCTCCACAACACCAACAGAGCTT 167
                      ************************************************************

consensus_5610#0      AAGAGCATTTTTGGTTGAGCAAGTGTCAAGCCCTAAGCATGCCAATTTCAGCTATTCTCT 240
consensus_5610#1      AAGAGCATTTTTGCTTGAGCAAGTGTCAAGCCCTAAGCATGCCAATTTCAGCTATTCTCT 227
                      ************* **********************************************

consensus_5610#0      ACATCATATTACAGAAGGCTTTGTGAACACAACACGGATGGAATGCACCTAGATAATCCA 300
consensus_5610#1      ACATCATATTACAGAAGGCTTTGTGAACACAACACGGATGGAATGCACCTAAATAATCCA 287
                      *************************************************** ********

consensus_5610#0      ATTAACCCATTTGCCTCGGGTCTTCTACTGCAGGGATGAACACAATATGTTGCCATTCAA 360
consensus_5610#1      ATTAACCCATTTGCCTCGGGTCTTCTACTGCAGGGATGAACACAATATGTTGCCATTCAA 347
                      ************************************************************

consensus_5610#0      AGCAGCAGACCACCTGCAACTCCACTAGTCCACTGACATTTTTTTAGGATCATGCAAGGA 420
consensus_5610#1      AGCAGCAGACCACCTGCAACTCCACTAGTCCACTGACATTTTTTTAGGATCATGCAAGGA 407
                      ************************************************************

consensus_5610#0      ATCATCAACGATTCATGGTGATCGAATTTCACAACGAGCAACGAAGGTTTATTACCCAGG 480
consensus_5610#1      ATCATCAACGATTCATGGTGATCGAATTTCACAACGAGCAACGAAGGTTTATTACCCAGG 467
                      ************************************************************

consensus_5610#0      TGGTGCATTAGGATCGCTCCTCCGACCTTGATCTTACAAATCTCCGGCGACTCCTTGGTC 540
consensus_5610#1      TGGTGCATTAGGATCGCTCCTCCGACCTTGATCTTACAAATCTCCGGCGACTCCTTGGTC 527
                      ************************************************************

consensus_5610#0      TTTGAACATCTTCATCTAGGTTTTCCTCCTCATCGTCCTCGTCCTCGTCTTCATATTGGA 600
consensus_5610#1      TTTGAACATCTTCATCTAGGTTTTCCTCCTCATCGTCCTCGTCCTCGTCTTCATATTGGA 587
                      ************************************************************

consensus_5610#0      GACCTAGTAAGTTCTCTCCCCATAAATAACGGCGCCTCTGCCTTCTCAGGCCCCTCGATG 660
consensus_5610#1      GACCTAGTAAGTTCTCTCCCCATAAATAACGGCGCCTCTGCCTTCTCAGGCCCCTCGATG 647
                      ************************************************************

consensus_5610#0      AGCCTCTTATCTCATCTCCTGATCTCATCGGACTACTACTGATCATATGGAACAGAAAGA 720
consensus_5610#1      AGCCTCTTATCTCATCTCCTGATCTCATCGGACTACTACTGATCATATGGAACAGAAAGA 707
                      ************************************************************

consensus_5610#0      ATGTTGTCCACAAAGATCCACTT-------- 743
consensus_5610#1      ATGTTGTCAACAAAGATCCACTTGGTTCATT 738
                      ******** **************        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)