These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5610#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 743 fasta sequence [CTTTTTTTTTGGACGAAATTTGATTCTAAAATTCCCATTGCCCAAAGATATCAAAGTAGAACAGCAGCAACACGAACAAATTCGGTACAATGTATTTGCAGATACTCTATACAACAAATGGCCAAACTGCTCACGAGGCAGCCCTGCTTATGATGCATCTCCACAACACCAACAGAGCTTAAGAGCATTTTTGGTTGAGCAAGTGTCAAGCCCTAAGCATGCCAATTTCAGCTATTCTCTACATCATATTACAGAAGGCTTTGTGAACACAACACGGATGGAATGCACCTAGATAATCCAATTAACCCATTTGCCTCGGGTCTTCTACTGCAGGGATGAACACAATATGTTGCCATTCAAAGCAGCAGACCACCTGCAACTCCACTAGTCCACTGACATTTTTTTAGGATCATGCAAGGAATCATCAACGATTCATGGTGATCGAATTTCACAACGAGCAACGAAGGTTTATTACCCAGGTGGTGCATTAGGATCGCTCCTCCGACCTTGATCTTACAAATCTCCGGCGACTCCTTGGTCTTTGAACATCTTCATCTAGGTTTTCCTCCTCATCGTCCTCGTCCTCGTCTTCATATTGGAGACCTAGTAAGTTCTCTCCCCATAAATAACGGCGCCTCTGCCTTCTCAGGCCCCTCGATGAGCCTCTTATCTCATCTCCTGATCTCATCGGACTACTACTGATCATATGGAACAGAAAGAATGTTGTCCACAAAGATCCACTT] [+] EMBL CB641829 [CTTTTTTTTTGGACGAAATTTGATTCTAAAATTCCCATTGCCCAAAGATATCAAAGTAGAACAGCAGCAACACGAACAAATTCGGTACAATGTATTTGCAGATACTCTATACAACAAATGGCCAAACTGCTCACGAGGCAGCCCTGCTTATGATGCATCTCCACAACACCAACAGAGCTTAAGAGCATTTTTGGTTGAGCAAGTGTCAAGCCCTAAGCATGCCAATTTCAGCTATTCTCTACATCATATTACAGAAGGCTTTGTGAACACAACACGGATGGAATGCACCTAGATAATCCAATTAACCCATTTGCCTCGGGTCTTCTACTGCAGGGATGAACACAATATGTTGCCATTCAAAGCAGCAGACCACCTGCAACTCCACTAGTCCACTGACATTTTTTTAGGATCATGCAAGGAATCATCAACGATTCATGGTGATCGAATTTCACAACGAGCAACGAAGGTTTATTACCCAGGTGGTGCATTAGGATCGCTCCTCCGACCTTGATCTTACAAATCTCCGGCGACTCCTTGGTCTTTGAACATCTTCATCTAGGTTTTCCTCCTCATCGTCCTCGTCCTCGTCTTCATATTGGAGACCTAGTAAGTTCTCTCCCCATAAATAACGGCGCCTCTGCCTTCTCAGGCCCCTCGATGAGCCTCTTATCTCATCTCCTGATCTCATCGGACTACTACTGATCATATGGAACAGAAAGAATGTTGTCCACAAAGATCCACTT] [-] EMBL AK059167 [ TGATTCTAAAATTCCCATTGAACAAAGATATCAAAGTAGAACAGCAGCAACACGAACAAATTCGGTACAATGTATTTGCAGATACTCTATACAACAAATGGCCAAACTGCTCACGAGGCAGCCCTGCTTATGATGCATCTCCACAACACCAACAGAGCTTAAGAGCATTTTTGGTTGAGCAAGTGTCAAGCCCTAAGCATGCCAATTTCAGCTATTCTCTACATCATATTACAGAAGGCTTTGTGAACACAACACGGATGGAATGCACCTAGATAATCCAATTAACCCATTTGCCTCGGGTCTTCTACTGCAGGGATGAACACAATATGTTGCCATTCAAAGCAGCAGACCACCTGCAACTCCACTAGTCCACTGACATTTTTTTAGGATCATGCAAGGAATCATCAACGATTCATGGTGATCGAATTTCACAACGAGCAACGAAGGTTTATTACCCAGGTGGTGCATTAGGATCGCTCCTCCGACCTTGATCTTACAAATCTCCGGCGACTCCTTGGTCTTTttttt ] consensusID : consensus_5610#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 738 fasta sequence [CCTCTTTTTTTTTTTTTTTTTTTTTTGAACAAAGATATCAAAGTACAACAGCAGCAACACGAACAAATTCGGTACAATGTATTTGCAGATACTCTATATAACAAATGGCCAAACTGCTCACGAGGCAGCCCTGCTTATGATGCATCTCCACAACACCAACAGAGCTTAAGAGCATTTTTGCTTGAGCAAGTGTCAAGCCCTAAGCATGCCAATTTCAGCTATTCTCTACATCATATTACAGAAGGCTTTGTGAACACAACACGGATGGAATGCACCTAAATAATCCAATTAACCCATTTGCCTCGGGTCTTCTACTGCAGGGATGAACACAATATGTTGCCATTCAAAGCAGCAGACCACCTGCAACTCCACTAGTCCACTGACATTTTTTTAGGATCATGCAAGGAATCATCAACGATTCATGGTGATCGAATTTCACAACGAGCAACGAAGGTTTATTACCCAGGTGGTGCATTAGGATCGCTCCTCCGACCTTGATCTTACAAATCTCCGGCGACTCCTTGGTCTTTGAACATCTTCATCTAGGTTTTCCTCCTCATCGTCCTCGTCCTCGTCTTCATATTGGAGACCTAGTAAGTTCTCTCCCCATAAATAACGGCGCCTCTGCCTTCTCAGGCCCCTCGATGAGCCTCTTATCTCATCTCCTGATCTCATCGGACTACTACTGATCATATGGAACAGAAAGAATGTTGTCAACAAAGATCCACTTGGTTCATT] [+] EMBL CB623288 [CCTCTTTTTTTTTTTTTTTTTTTTTTGAACAAAGATATCAAAGTACAACAGCAGCAACACGAACAAATTCGGTACAATGTATTTGCAGATACTCTATATAACAAATGGCCAAACTGCTCACGAGGCAGCCCTGCTTATGATGCATCTCCACAACACCAACAGAGCTTAAGAGCATTTTTGCTTGAGCAAGTGTCAAGCCCTAAGCATGCCAATTTCAGCTATTCTCTACATCATATTACAGAAGGCTTTGTGAACACAACACGGATGGAATGCACCTAAATAATCCAATTAACCCATTTGCCTCGGGTCTTCTACTGCAGGGATGAACACAATATGTTGCCATTCAAAGCAGCAGACCACCTGCAACTCCACTAGTCCACTGACATTTTTTTAGGATCATGCAAGGAATCATCAACGATTCATGGTGATCGAATTTCACAACGAGCAACGAAGGTTTATTACCCAGGTGGTGCATTAGGATCGCTCCTCCGACCTTGATCTTACAAATCTCCGGCGACTCCTTGGTCTTTGAACATCTTCATCTAGGTTTTCCTCCTCATCGTCCTCGTCCTCGTCTTCATATTGGAGACCTAGTAAGTTCTCTCCCCATAAATAACGGCGCCTCTGCCTTCTCAGGCCCCTCGATGAGCCTCTTATCTCATCTCCTGATCTCATCGGACTACTACTGATCATATGGAACAGAAAGAATGTTGTCAACAAAGATCCACTTGGTTCATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5610#0 CTTTTTTTTTGGACGAAATTTGATTCTAAAATTCCCATTGCCCAAAGATATCAAAGTAGA 60 consensus_5610#1 -------------CCTCTTTTTTTTTTTTTTTTTTTTTTGAACAAAGATATCAAAGTACA 47 * *** ** * ** *** **************** * consensus_5610#0 ACAGCAGCAACACGAACAAATTCGGTACAATGTATTTGCAGATACTCTATACAACAAATG 120 consensus_5610#1 ACAGCAGCAACACGAACAAATTCGGTACAATGTATTTGCAGATACTCTATATAACAAATG 107 *************************************************** ******** consensus_5610#0 GCCAAACTGCTCACGAGGCAGCCCTGCTTATGATGCATCTCCACAACACCAACAGAGCTT 180 consensus_5610#1 GCCAAACTGCTCACGAGGCAGCCCTGCTTATGATGCATCTCCACAACACCAACAGAGCTT 167 ************************************************************ consensus_5610#0 AAGAGCATTTTTGGTTGAGCAAGTGTCAAGCCCTAAGCATGCCAATTTCAGCTATTCTCT 240 consensus_5610#1 AAGAGCATTTTTGCTTGAGCAAGTGTCAAGCCCTAAGCATGCCAATTTCAGCTATTCTCT 227 ************* ********************************************** consensus_5610#0 ACATCATATTACAGAAGGCTTTGTGAACACAACACGGATGGAATGCACCTAGATAATCCA 300 consensus_5610#1 ACATCATATTACAGAAGGCTTTGTGAACACAACACGGATGGAATGCACCTAAATAATCCA 287 *************************************************** ******** consensus_5610#0 ATTAACCCATTTGCCTCGGGTCTTCTACTGCAGGGATGAACACAATATGTTGCCATTCAA 360 consensus_5610#1 ATTAACCCATTTGCCTCGGGTCTTCTACTGCAGGGATGAACACAATATGTTGCCATTCAA 347 ************************************************************ consensus_5610#0 AGCAGCAGACCACCTGCAACTCCACTAGTCCACTGACATTTTTTTAGGATCATGCAAGGA 420 consensus_5610#1 AGCAGCAGACCACCTGCAACTCCACTAGTCCACTGACATTTTTTTAGGATCATGCAAGGA 407 ************************************************************ consensus_5610#0 ATCATCAACGATTCATGGTGATCGAATTTCACAACGAGCAACGAAGGTTTATTACCCAGG 480 consensus_5610#1 ATCATCAACGATTCATGGTGATCGAATTTCACAACGAGCAACGAAGGTTTATTACCCAGG 467 ************************************************************ consensus_5610#0 TGGTGCATTAGGATCGCTCCTCCGACCTTGATCTTACAAATCTCCGGCGACTCCTTGGTC 540 consensus_5610#1 TGGTGCATTAGGATCGCTCCTCCGACCTTGATCTTACAAATCTCCGGCGACTCCTTGGTC 527 ************************************************************ consensus_5610#0 TTTGAACATCTTCATCTAGGTTTTCCTCCTCATCGTCCTCGTCCTCGTCTTCATATTGGA 600 consensus_5610#1 TTTGAACATCTTCATCTAGGTTTTCCTCCTCATCGTCCTCGTCCTCGTCTTCATATTGGA 587 ************************************************************ consensus_5610#0 GACCTAGTAAGTTCTCTCCCCATAAATAACGGCGCCTCTGCCTTCTCAGGCCCCTCGATG 660 consensus_5610#1 GACCTAGTAAGTTCTCTCCCCATAAATAACGGCGCCTCTGCCTTCTCAGGCCCCTCGATG 647 ************************************************************ consensus_5610#0 AGCCTCTTATCTCATCTCCTGATCTCATCGGACTACTACTGATCATATGGAACAGAAAGA 720 consensus_5610#1 AGCCTCTTATCTCATCTCCTGATCTCATCGGACTACTACTGATCATATGGAACAGAAAGA 707 ************************************************************ consensus_5610#0 ATGTTGTCCACAAAGATCCACTT-------- 743 consensus_5610#1 ATGTTGTCAACAAAGATCCACTTGGTTCATT 738 ******** ************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||