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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5615#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1797 fasta sequence
[AGCGTGCTCCTCCTCTCCTCCACACACAATCCGATCGGTAGCCGCGGGCTCGTTGTTGCGATGGCCGGCAAGAACGGGAGCCTCTACGCGGTGCTCGGCGTCGCCAGCGACTGCTCCGACGCCGACCTGCGCACCGCCTACCGCAAGCTCGCCATGGTACGGTGCTGATTCCTCTGCTTTGCTCTGTTTTTTTTTTTTTTTGCCGATTTAACCGTCTCCCAGTGGCTGTTTGTCTCCGGGCAGAAATGGCACCCGGACAAGTGCGGCGCCGCCGGGAGCTCAGCCGGCGGCGGTGCAGAGGCGGCCAAGGTGAGGTTCCAGAAGATCCAGGGAGCCTACGCCGGTAATTAAATCTCAGCCACCTTCTTCGTCTTCCTCTGCTTCTGACCAGTGCTCAGAGCACAAGCTGCCATTGATTTCGGACGCTGAGATTTTTTTTTAGCTTCTCGTTGATCGGTCTTCGCTGCTGTTACGGTCTGTCCGTTCCCGTTGTTTCACCATTCTGACAGCGACGTGGTTTTAACTGAACAGTGCTCTCCGATCCCAACAAGAGGATCCTCTATGACGTCGGAGCCTACGACAGCGACGGCGATGATGATGTAACAGCATTTTCCGGCCTTTTTTATCTCTTTTTTTTGCACCAATCAATGATAAAGATATTTTGTGGCCGGCTTGTGTGCTGACTTGGTCGTGCCAATTCACGTGCAGGGCGCCGGTGAAATTCTCGGCGACATTCTCGAGGCCATGAACAAAACCGGCCCTACGGTAACAAACCTATCTGAATTCGAATTTCGACGTGAACTTTAAAAATTCGATGTAAATTCACACCCTGTTCATGCATGTTGGTGTGGTGAACGCGTGCGCAGGAGAATGGCAAGAACGAGAGCTTCGAAGACCTGCAGAGGCAGTTCGAGGAGCTGTTCCTCCGGCCGCCGGCGCCGGCGCCGCCGACGTCGTCGTCGTTCCGGTCGGCGGTACGTGACTGTCGTGTCGTACACCACTGATTCCTCTGACTGATACGACGAGACACAGCAGTTACCTAGCTGTATGTCCTTTCTGATTAGTGACTAAACAGGCCATCTTTTTCTTCAGAAATTAACTTTCCCATTTTTTTTAGAGTGTGCGTCGCTTTCTCTGACAACTGTTTGCACACAAGCATGTCGGGAGAAGAGCACGAGCTGTCGTTTTATACGGCATGCAAATTACAGTAATGGTTAGGTGCATTGCATCCTCTTGCCTGCCCAAGCTTAGAGAAGATTATCCATAAACAGTTTGGTCGCTTAATTAATTATAAGCACAGAATAGGTTTTCTTGCGCTACATGGACACTGATTACGTACACAAGATTTAATAACCCTTGACTAACTCTGTATTTCTATCTGTGCCTGATAATCTGCAGCAAGAGGACGCTGGGAAGTCTTCAAAGAGAAGGGCCGGAAGAACGTAGAAGTACGTACTTTTGGCCGAAGATTTTTGTACTGCAACATTTTTGAATCTATTTCGTACGTGCAGTGCTCAAGACGACCGTCATTTGTGCTAATAATTAAGCTGATTGATCAAGAAGAAAACGATTCAGATAATGATATGACGCACTGATGATCTAGGGCAGTAGCCTGTAATCTCAATAACACCTTTGGCAGACGTCATTCGGTTTGCATGTATGCGGGTGGCTATTAATTTGCCTAGCTAGAAATTGGCCAATTTAAAGTTTGGCCACACGTCAATTCTTATATGAATATGTGCAATATTGTCAAATCTGGGTACTTCTCCCTGATGAATTAAATGAAGAAAAGTGAGG]
[+] EMBL AK069153 [AGCGTGCTCCTCCTCTCCTCCACACACAATCCGATCGGTAGCCGCGGGCTCGTTGTTGCGATGGCCGGCAAGAACGGGAGCCTCTACGCGGTGCTCGGCGTCGCCAGCGACTGCTCCGACGCCGACCTGCGCACCGCCTACCGCAAGCTCGCCATGGTACGGTGCTGATTCCTCTGCTTTGCTCTGTTTTTTTTTTTTTTTGCCGATTTAACCGTCTCCCAGTGGCTGTTTGTCTCCGGGCAGAAATGGCACCCGGACAAGTGCGGCGCCGCCGGGAGCTCAGCCGGCGGCGGTGCAGAGGCGGCCAAGGTGAGGTTCCAGAAGATCCAGGGAGCCTACGCCGGTAATTAAATCTCAGCCACCTTCTTCGTCTTCCTCTGCTTCTGACCAGTGCTCAGAGCACAAGCTGCCATTGATTTCGGACGCTGAGATTTTTTTTTAGCTTCTCGTTGATCGGTCTTCGCTGCTGTTACGGTCTGTCCGTTCCCGTTGTTTCACCATTCTGACAGCGACGTGGTTTTAACTGAACAGTGCTCTCCGATCCCAACAAGAGGATCCTCTATGACGTCGGAGCCTACGACAGCGACGGCGATGATGATGTAACAGCATTTTCCGGCCTTTTTTATCTCTTTTTTTTGCACCAATCAATGATAAAGATATTTTGTGGCCGGCTTGTGTGCTGACTTGGTCGTGCCAATTCACGTGCAGGGCGCCGGTGAAATTCTCGGCGACATTCTCGAGGCCATGAACAAAACCGGCCCTACGGTAACAAACCTATCTGAATTCGAATTTCGACGTGAACTTTAAAAATTCGATGTAAATTCACACCCTGTTCATGCATGTTGGTGTGGTGAACGCGTGCGCAGGAGAATGGCAAGAACGAGAGCTTCGAAGACCTGCAGAGGCAGTTCGAGGAGCTGTTCCTCCGGCCGCCGGCGCCGGCGCCGCCGACGTCGTCGTCGTTCCGGTCGGCGGTACGTGACTGTCGTGTCGTACACCACTGATTCCTCTGACTGATACGACGAGACACAGCAGTTACCTAGCTGTATGTCCTTTCTGATTAGTGACTAAACAGGCCATCTTTTTCTTCAGAAATTAACTTTCCCATTTTTTTTAGAGTGTGCGTCGCTTTCTCTGACAACTGTTTGCACACAAGCATGTCGGGAGAAGAGCACGAGCTGTCGTTTTATACGGCATGCAAATTACAGTAATGGTTAGGTGCATTGCATCCTCTTGCCTGCCCAAGCTTAGAGAAGATTATCCATAAACAGTTTGGTCGCTTAATTAATTATAAGCACAGAATAGGTTTTCTTGCGCTACATGGACACTGATTACGTACACAAGATTTAATAACCCTTGACTAACTCTGTATTTCTATCTGTGCCTGATAATCTGCAGCAAGAGGACGCTGGGAAGTCTTCAAAGAGAAGGGCCGGAAGAACGTAGAAGTACGTACTTTTGGCCGAAGATTTTTGTACTGCAACATTTTTGAATCTATTTCGTACGTGCAGTGCTCAAGACGACCGTCATTTGTGCTAATAATTAAGCTGATTGATCAAGAAGAAAACGATTCAGATAATGATATGACGCACTGATGATCTAGGGCAGTAGCCTGTAATCTCAATAACACCTTTGGCAGACGTCATTCGGTTTGCATGTATGCGGGTGGCTATTAATTTGCCTAGCTAGAAATTGGCCAATTTAAAGTTTGGCCACACGTCAATTCTTATATGAATATGTGCAATATTGTCAAATCTGGGTACTTCTCCCTGATGAATTAAATGAAGAAAAGTGAGG]
consensusID : consensus_5615#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 878 fasta sequence
[TCCACACACAATCCGATCGGTAGCCGCGGGCTCGTTGTTGCGATGGCCGGCAAGAACGGGAGCCTCTACGCGGTGCTCGGCGTCGCCAGCGACTGCTCCGACGCCGACCTGCGCACCGCCTACCGCAAGCTCGCCATGAAATGGCACCCGGACAAGTGCGGCGCCGCCGGGAGCTCAGCCGGCGGCGGTGCAGAGGCGGCCAAGGTGAGGTTCCAGAAGATCCAGGGAGCCTACGCCGTGCTCTCCGATCCCAACAAGAGGATCCTCTATGACGTCGGAGCCTACGACAGCGACGGCGATGATGATGGCGCCGGTGAAATTCTCGGCGACATTCTCGAGGCCATGAACAAAACCGGCCCTACGGAGAATGGCAAGAACGAGAGCTTCGAAGACCTGCAGAGGCAGTTCGAGGAGCTGTTCCTCCGGCCGCCGACGTCGTCGTCGTTCCGGTCGGCGCAAGAGGACGCTGGGAAGTCTTCAAAGAGAAGGGCCGGAAGAACGTAGAAGTACGTACTTTTGGCCGAAGATTTTTGTACTGCGAGATTTTTGAATCTATTTCGTACGTGCAGTGCTCAAGACGACCGTCATTTGTGCTAATAATTAAGCTGATTGATCAAGAAGAAAACGATTCAGATAATGATATGACGCACTGATGATCTAGGGCAGTAACCTGTAATCTCAATAACACCTTTGGCAGACGTCATTCGGTTTGCATGTATGCAGGTGGCTATTAATTTGCCTAGCTAGAAATTGGCCAATTT-AAGTTTGGCCACACGTCAATTCTTATATGAATATGTGCAATATTGTCAAATCTGGGTACTTCTCCCTGATGAATTAAATGAAGAAAAATGAGGGCTAATGATCAAAAAAAAAAGGAA]
[+] EMBL CB624094 [TCCACACACAATCCGATCGGTAGCCGCGGGCTCGTTGTTGCGATGGCCGGCAAGAACGGGAGCCTCTACGCGGTGCTCGGCGTCGCCAGCGACTGCTCCGACGCCGACCTGCGCACCGCCTACCGCAAGCTCGCCATGAAATGGCACCCGGACAAGTGCGGCGCCGCCGGGAGCTCAGCCGGCGGCGGTGCAGAGGCGGCCAAGGTGAGGTTCCAGAAGATCCAGGGAGCCTACGCCGTGCTCTCCGATCCCAACAAGAGGATCCTCTATGACGTCGGAGCCTACGACAGCGACGGCGATGATGATGGCGCCGGTGAAATTCTCGGCGACATTCTCGAGGCCATGAACAAAACCGGCCCTACGGAGAATGGCAAGAACGAGAGCTTCGAAGACCTGCAGAGGCAGTTCGAGGAGCTGTTCCTCCGGCCGCCGACGTCGTCGTCGTTCCGGTCGGCGCAAGAGGACGCTGGGAAGTCTTCAAAGAGAAGGGCCGGAAGAACGTAGAAGTACGTACTTTTGGCCGAAGATTTTTGTACTGCGAGATTTTTGAATCTATTTCGTACGTGCAGTGCTCAAGACGACCGTCATTTGTGCTAATAATTAAGCTGATTGATCAAGAAGAAAACGATTCAGATAATGATATGACGCACTGATGATCTAGGGCAGTAACCTGTAATCTCAATAACACCTTTGGCAGACGTCATTCGGTTTGCATGTATGCAGGTGGCTATTAATTTGCCTAGCTAGAAATTGGCCAATTT AAGTTTGGCCACACGTCAATTCTTATATGAATATGTGCAATATTGTCAAATCTGGGTACTTCTCCCTGATGAATTAAATGAAGAAAAATGAGG ]
[-] EMBL CB624095 [ GCACCCGGACAAGTGCGGCGCCGCCGGGAGCTCAGCCGGCGGCGGTGCAGAGGCGGCCAAGGTGAGGTTCCAGAAGATCCAGGGAGCCTACGCCGTGCTCTCCGATCCCAACAAGAGGATCCTCTATGACGTCGGAGCCTACGACAGCGACGGCGATGATGATGGCGCCGGTGAAATTCTCGGCGACATTCTGGAGGCCATGAACAAAACCGGCCCTACGGAGAATGGCAAGAACGAGAGCTTCGAAGACCTGCAGAGGCAGTTCGAGGAGCTGTTCCTCCGGCCGCCGACGTCGTCGTCGTTCCGGTCGGCGCAAGAGGACGCTGGGAAGTCTTCAAAGAGAAGGGCCGGAAGAACGTAGAAGTACGTACTTTTGGCCGAAGATTTTTGTACTGCGAGATTTTTGAATCTATTTCGTACGTGCAGTGCTCAAGACGACCGTCATTTGTGCTAATAATTAAGCTGATTGATCAAGAAGAAAACGATTCAGATAATGATATGACGCACTGATGATCTAGGGCAGTAACCTGTAATCTCAATAACACCTTTGGCAGACGTCATTCGGTTTGCATGTATGCAGGTGGCTATTAATTTGCCTAGCTAGAAATTGGCCAATTTAAAGTTTGGCCACACGTCAATTCTTATATGAATATGTGCAATATTGTCAAATCTGGGTACTTCTCCCTGATGAATTAAATGAAGAAAAATGAGGGCTAATGATCAAAAAAAAAAGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5615#0 AGCGTGCTCCTCCTCTCCTCCACACACAATCCGATCGGTAGCCGCGGGCTCGTTGTTGCG 60
consensus_5615#1 ------------------------------------------------------------
consensus_5615#0 ATGGCCGGCAAGAACGGGAGCCTCTACGCGGTGCTCGGCGTCGCCAGCGACTGCTCCGAC 120
consensus_5615#1 ------------------------------------------------------------
consensus_5615#0 GCCGACCTGCGCACCGCCTACCGCAAGCTCGCCATGGTACGGTGCTGATTCCTCTGCTTT 180
consensus_5615#1 ------------------------------------------------------------
consensus_5615#0 GCTCTGTTTTTTTTTTTTTTTGCCGATTTAACCGTCTCCCAGTGGCTGTTTGTCTCCGGG 240
consensus_5615#1 ------------------------------------------------------------
consensus_5615#0 CAGAAATGGCACCCGGACAAGTGCGGCGCCGCCGGGAGCTCAGCCGGCGGCGGTGCAGAG 300
consensus_5615#1 ------------------------------------------------------------
consensus_5615#0 GCGGCCAAGGTGAGGTTCCAGAAGATCCAGGGAGCCTACGCCGGTAATTAAATCTCAGCC 360
consensus_5615#1 ------------------------------------------------------------
consensus_5615#0 ACCTTCTTCGTCTTCCTCTGCTTCTGACCAGTGCTCAGAGCACAAGCTGCCATTGATTTC 420
consensus_5615#1 ------------------------------------------------------------
consensus_5615#0 GGACGCTGAGATTTTTTTTTAGCTTCTCGTTGATCGGTCTTCGCTGCTGTTACGGTCTGT 480
consensus_5615#1 ------------------------------------------------------------
consensus_5615#0 CCGTTCCCGTTGTTTCACCATTCTGACAGCGACGTGGTTTTAACTGAACAGTGCTCTCCG 540
consensus_5615#1 ------------------------------------------------------------
consensus_5615#0 ATCCCAACAAGAGGATCCTCTATGACGTCGGAGCCTACGACAGCGACGGCGATGATGATG 600
consensus_5615#1 ------------------------------------------------------------
consensus_5615#0 TAACAGCATTTTCCGGCCTTTTTTATCTCTTTTTTTTGCACCAATCAATGATAAAGATAT 660
consensus_5615#1 ------------------------------------------------------------
consensus_5615#0 TTTGTGGCCGGCTTGTGTGCTGACTTGGTCGTGCCAATTCACGTGCAGGGCGCCGGTGAA 720
consensus_5615#1 ------------------------------------------------------------
consensus_5615#0 ATTCTCGGCGACATTCTCGAGGCCATGAACAAAACCGGCCCTACGGTAACAAACCTATCT 780
consensus_5615#1 ------------------------------------------------------------
consensus_5615#0 GAATTCGAATTTCGACGTGAACTTTAAAAATTCGATGTAAATTCACACCCTGTTCATGCA 840
consensus_5615#1 ------------------------------------------------------------
consensus_5615#0 TGTTGGTGTGGTGAACGCGTGCGCAGGAGAATGGCAAGAACGAGAGCTTCGAAGACCTGC 900
consensus_5615#1 ---------------------------------------------TCCACACACAATCCG 15
* * * *
consensus_5615#0 AGAGGCAGTTCGAGGAGCTGTTCCTCCGGCCGCCGGCGCCGGCGCCGCCGACGTCGTCGT 960
consensus_5615#1 ATCGGTAGC-CGCGGGCTCGTTGTTGCGATGGCCGGC---AAGAACGGGAGCCTCTACGC 71
* ** ** ** ** *** * ** ****** ** * ** **
consensus_5615#0 CGTTCCGGTCGGCGGTACGTGACTGTCGTGTCGTACACCACTGATTCCTCTG--ACTGAT 1018
consensus_5615#1 GGTGCTCGGCGTCGCCA-GCGACTGCTCCGACGCCGACCTGCGCACCGCCTACCGCAAGC 130
** * * ** ** * * ***** * ** *** * * ** *
consensus_5615#0 ACGACGAGACACAGCAGTTACCTAGCTGTATGTCCTTTCTGATTAGTGACTAAACAGGCC 1078
consensus_5615#1 TCGCCATGAAATGGCACCCGGACAA--GTGCGGCGCCGCCGGGAGCTCAGCCGGCGGCGG 188
** * ** * *** * ** * * * * * * * *
consensus_5615#0 ATCTTTTTCTTCAGAAATTAACTTTCCCATTTTTTTTAGAGTGTGCGTCGCTTTCTCTGA 1138
consensus_5615#1 TGCAGAGGCGGCCAAGGTGAGGTTCCAGAAGATCCAGGGAGCCTACGCCGTGCTCTCCGA 248
* * * * * * ** * * * *** * ** ** **** **
consensus_5615#0 CAACTGTTTGCACACAAGCATGTCGGGAGAAGAGCACGAGCTGTCGTTTTATACGGCATG 1198
consensus_5615#1 T-----------CCCAA------CAAGAGGATCCTCTATGACGTCGGAGCCTACGACA-G 290
* *** * *** * * **** **** ** *
consensus_5615#0 CAAATTACAGTAATGGTTAGGTGCATTGCATCCTCTTGCCTGCCCAAGCTTAGAGAAGAT 1258
consensus_5615#1 CGA-CGGCGATGATGATGGCGCCGGTGAAATTCTCG-----GCGACATTCTCGAGG---- 340
* * * * *** * * * ** *** ** * * ***
consensus_5615#0 TATCCATAAACAGT-TTGGTCGCTTAATTAATTATAAGCACAGAATAGGTTTTCTTGCGC 1317
consensus_5615#1 ---CCATGAACAAAACCGGCCCTACGGAGAATGGCAAGAACGAGA---GCTTCGAAGACC 394
**** **** ** * *** *** ** * * ** * *
consensus_5615#0 TACATGGACACTGATTACGTACACAAGATTTAATAACCCTTGACTAACTCTGTATTTCTA 1377
consensus_5615#1 TGCAGAGGCA--------GTTCG-AGGAGCTGTT--CCTCCGGCCGCCGACGTCGTCGT- 442
* ** * ** ** * * ** * * ** * * * ** * *
consensus_5615#0 TCTGTGCCTGATAATCTGCAGCAAGAGGACGCTGGGAAGTCTTCAAAGAGAAGGGCCGGA 1437
consensus_5615#1 --CGTTCC----GGTCGGC-GCAAGAGGACGCTGGGAAGTCTTCAAAGAGAAGGGCCGGA 495
** ** ** ** ****************************************
consensus_5615#0 AGAACGTAGAAGTACGTACTTTTGGCCGAAGATTTTTGTACTGCAACATTTTTGAATCTA 1497
consensus_5615#1 AGAACGTAGAAGTACGTACTTTTGGCCGAAGATTTTTGTACTGCGAGATTTTTGAATCTA 555
******************************************** * *************
consensus_5615#0 TTTCGTACGTGCAGTGCTCAAGACGACCGTCATTTGTGCTAATAATTAAGCTGATTGATC 1557
consensus_5615#1 TTTCGTACGTGCAGTGCTCAAGACGACCGTCATTTGTGCTAATAATTAAGCTGATTGATC 615
************************************************************
consensus_5615#0 AAGAAGAAAACGATTCAGATAATGATATGACGCACTGATGATCTAGGGCAGTAGCCTGTA 1617
consensus_5615#1 AAGAAGAAAACGATTCAGATAATGATATGACGCACTGATGATCTAGGGCAGTAACCTGTA 675
***************************************************** ******
consensus_5615#0 ATCTCAATAACACCTTTGGCAGACGTCATTCGGTTTGCATGTATGCGGGTGGCTATTAAT 1677
consensus_5615#1 ATCTCAATAACACCTTTGGCAGACGTCATTCGGTTTGCATGTATGCAGGTGGCTATTAAT 735
********************************************** *************
consensus_5615#0 TTGCCTAGCTAGAAATTGGCCAATTTAAAGTTTGGCCACACGTCAATTCTTATATGAATA 1737
consensus_5615#1 TTGCCTAGCTAGAAATTGGCCAATTTAA-GTTTGGCCACACGTCAATTCTTATATGAATA 794
**************************** *******************************
consensus_5615#0 TGTGCAATATTGTCAAATCTGGGTACTTCTCCCTGATGAATTAAATGAAGAAAAGTGAGG 1797
consensus_5615#1 TGTGCAATATTGTCAAATCTGGGTACTTCTCCCTGATGAATTAAATGAAGAAAAATGAGG 854
****************************************************** *****
consensus_5615#0 ------------------------
consensus_5615#1 GCTAATGATCAAAAAAAAAAGGAA 878
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||