These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5615#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1797 fasta sequence [AGCGTGCTCCTCCTCTCCTCCACACACAATCCGATCGGTAGCCGCGGGCTCGTTGTTGCGATGGCCGGCAAGAACGGGAGCCTCTACGCGGTGCTCGGCGTCGCCAGCGACTGCTCCGACGCCGACCTGCGCACCGCCTACCGCAAGCTCGCCATGGTACGGTGCTGATTCCTCTGCTTTGCTCTGTTTTTTTTTTTTTTTGCCGATTTAACCGTCTCCCAGTGGCTGTTTGTCTCCGGGCAGAAATGGCACCCGGACAAGTGCGGCGCCGCCGGGAGCTCAGCCGGCGGCGGTGCAGAGGCGGCCAAGGTGAGGTTCCAGAAGATCCAGGGAGCCTACGCCGGTAATTAAATCTCAGCCACCTTCTTCGTCTTCCTCTGCTTCTGACCAGTGCTCAGAGCACAAGCTGCCATTGATTTCGGACGCTGAGATTTTTTTTTAGCTTCTCGTTGATCGGTCTTCGCTGCTGTTACGGTCTGTCCGTTCCCGTTGTTTCACCATTCTGACAGCGACGTGGTTTTAACTGAACAGTGCTCTCCGATCCCAACAAGAGGATCCTCTATGACGTCGGAGCCTACGACAGCGACGGCGATGATGATGTAACAGCATTTTCCGGCCTTTTTTATCTCTTTTTTTTGCACCAATCAATGATAAAGATATTTTGTGGCCGGCTTGTGTGCTGACTTGGTCGTGCCAATTCACGTGCAGGGCGCCGGTGAAATTCTCGGCGACATTCTCGAGGCCATGAACAAAACCGGCCCTACGGTAACAAACCTATCTGAATTCGAATTTCGACGTGAACTTTAAAAATTCGATGTAAATTCACACCCTGTTCATGCATGTTGGTGTGGTGAACGCGTGCGCAGGAGAATGGCAAGAACGAGAGCTTCGAAGACCTGCAGAGGCAGTTCGAGGAGCTGTTCCTCCGGCCGCCGGCGCCGGCGCCGCCGACGTCGTCGTCGTTCCGGTCGGCGGTACGTGACTGTCGTGTCGTACACCACTGATTCCTCTGACTGATACGACGAGACACAGCAGTTACCTAGCTGTATGTCCTTTCTGATTAGTGACTAAACAGGCCATCTTTTTCTTCAGAAATTAACTTTCCCATTTTTTTTAGAGTGTGCGTCGCTTTCTCTGACAACTGTTTGCACACAAGCATGTCGGGAGAAGAGCACGAGCTGTCGTTTTATACGGCATGCAAATTACAGTAATGGTTAGGTGCATTGCATCCTCTTGCCTGCCCAAGCTTAGAGAAGATTATCCATAAACAGTTTGGTCGCTTAATTAATTATAAGCACAGAATAGGTTTTCTTGCGCTACATGGACACTGATTACGTACACAAGATTTAATAACCCTTGACTAACTCTGTATTTCTATCTGTGCCTGATAATCTGCAGCAAGAGGACGCTGGGAAGTCTTCAAAGAGAAGGGCCGGAAGAACGTAGAAGTACGTACTTTTGGCCGAAGATTTTTGTACTGCAACATTTTTGAATCTATTTCGTACGTGCAGTGCTCAAGACGACCGTCATTTGTGCTAATAATTAAGCTGATTGATCAAGAAGAAAACGATTCAGATAATGATATGACGCACTGATGATCTAGGGCAGTAGCCTGTAATCTCAATAACACCTTTGGCAGACGTCATTCGGTTTGCATGTATGCGGGTGGCTATTAATTTGCCTAGCTAGAAATTGGCCAATTTAAAGTTTGGCCACACGTCAATTCTTATATGAATATGTGCAATATTGTCAAATCTGGGTACTTCTCCCTGATGAATTAAATGAAGAAAAGTGAGG] [+] EMBL AK069153 [AGCGTGCTCCTCCTCTCCTCCACACACAATCCGATCGGTAGCCGCGGGCTCGTTGTTGCGATGGCCGGCAAGAACGGGAGCCTCTACGCGGTGCTCGGCGTCGCCAGCGACTGCTCCGACGCCGACCTGCGCACCGCCTACCGCAAGCTCGCCATGGTACGGTGCTGATTCCTCTGCTTTGCTCTGTTTTTTTTTTTTTTTGCCGATTTAACCGTCTCCCAGTGGCTGTTTGTCTCCGGGCAGAAATGGCACCCGGACAAGTGCGGCGCCGCCGGGAGCTCAGCCGGCGGCGGTGCAGAGGCGGCCAAGGTGAGGTTCCAGAAGATCCAGGGAGCCTACGCCGGTAATTAAATCTCAGCCACCTTCTTCGTCTTCCTCTGCTTCTGACCAGTGCTCAGAGCACAAGCTGCCATTGATTTCGGACGCTGAGATTTTTTTTTAGCTTCTCGTTGATCGGTCTTCGCTGCTGTTACGGTCTGTCCGTTCCCGTTGTTTCACCATTCTGACAGCGACGTGGTTTTAACTGAACAGTGCTCTCCGATCCCAACAAGAGGATCCTCTATGACGTCGGAGCCTACGACAGCGACGGCGATGATGATGTAACAGCATTTTCCGGCCTTTTTTATCTCTTTTTTTTGCACCAATCAATGATAAAGATATTTTGTGGCCGGCTTGTGTGCTGACTTGGTCGTGCCAATTCACGTGCAGGGCGCCGGTGAAATTCTCGGCGACATTCTCGAGGCCATGAACAAAACCGGCCCTACGGTAACAAACCTATCTGAATTCGAATTTCGACGTGAACTTTAAAAATTCGATGTAAATTCACACCCTGTTCATGCATGTTGGTGTGGTGAACGCGTGCGCAGGAGAATGGCAAGAACGAGAGCTTCGAAGACCTGCAGAGGCAGTTCGAGGAGCTGTTCCTCCGGCCGCCGGCGCCGGCGCCGCCGACGTCGTCGTCGTTCCGGTCGGCGGTACGTGACTGTCGTGTCGTACACCACTGATTCCTCTGACTGATACGACGAGACACAGCAGTTACCTAGCTGTATGTCCTTTCTGATTAGTGACTAAACAGGCCATCTTTTTCTTCAGAAATTAACTTTCCCATTTTTTTTAGAGTGTGCGTCGCTTTCTCTGACAACTGTTTGCACACAAGCATGTCGGGAGAAGAGCACGAGCTGTCGTTTTATACGGCATGCAAATTACAGTAATGGTTAGGTGCATTGCATCCTCTTGCCTGCCCAAGCTTAGAGAAGATTATCCATAAACAGTTTGGTCGCTTAATTAATTATAAGCACAGAATAGGTTTTCTTGCGCTACATGGACACTGATTACGTACACAAGATTTAATAACCCTTGACTAACTCTGTATTTCTATCTGTGCCTGATAATCTGCAGCAAGAGGACGCTGGGAAGTCTTCAAAGAGAAGGGCCGGAAGAACGTAGAAGTACGTACTTTTGGCCGAAGATTTTTGTACTGCAACATTTTTGAATCTATTTCGTACGTGCAGTGCTCAAGACGACCGTCATTTGTGCTAATAATTAAGCTGATTGATCAAGAAGAAAACGATTCAGATAATGATATGACGCACTGATGATCTAGGGCAGTAGCCTGTAATCTCAATAACACCTTTGGCAGACGTCATTCGGTTTGCATGTATGCGGGTGGCTATTAATTTGCCTAGCTAGAAATTGGCCAATTTAAAGTTTGGCCACACGTCAATTCTTATATGAATATGTGCAATATTGTCAAATCTGGGTACTTCTCCCTGATGAATTAAATGAAGAAAAGTGAGG] consensusID : consensus_5615#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 878 fasta sequence [TCCACACACAATCCGATCGGTAGCCGCGGGCTCGTTGTTGCGATGGCCGGCAAGAACGGGAGCCTCTACGCGGTGCTCGGCGTCGCCAGCGACTGCTCCGACGCCGACCTGCGCACCGCCTACCGCAAGCTCGCCATGAAATGGCACCCGGACAAGTGCGGCGCCGCCGGGAGCTCAGCCGGCGGCGGTGCAGAGGCGGCCAAGGTGAGGTTCCAGAAGATCCAGGGAGCCTACGCCGTGCTCTCCGATCCCAACAAGAGGATCCTCTATGACGTCGGAGCCTACGACAGCGACGGCGATGATGATGGCGCCGGTGAAATTCTCGGCGACATTCTCGAGGCCATGAACAAAACCGGCCCTACGGAGAATGGCAAGAACGAGAGCTTCGAAGACCTGCAGAGGCAGTTCGAGGAGCTGTTCCTCCGGCCGCCGACGTCGTCGTCGTTCCGGTCGGCGCAAGAGGACGCTGGGAAGTCTTCAAAGAGAAGGGCCGGAAGAACGTAGAAGTACGTACTTTTGGCCGAAGATTTTTGTACTGCGAGATTTTTGAATCTATTTCGTACGTGCAGTGCTCAAGACGACCGTCATTTGTGCTAATAATTAAGCTGATTGATCAAGAAGAAAACGATTCAGATAATGATATGACGCACTGATGATCTAGGGCAGTAACCTGTAATCTCAATAACACCTTTGGCAGACGTCATTCGGTTTGCATGTATGCAGGTGGCTATTAATTTGCCTAGCTAGAAATTGGCCAATTT-AAGTTTGGCCACACGTCAATTCTTATATGAATATGTGCAATATTGTCAAATCTGGGTACTTCTCCCTGATGAATTAAATGAAGAAAAATGAGGGCTAATGATCAAAAAAAAAAGGAA] [+] EMBL CB624094 [TCCACACACAATCCGATCGGTAGCCGCGGGCTCGTTGTTGCGATGGCCGGCAAGAACGGGAGCCTCTACGCGGTGCTCGGCGTCGCCAGCGACTGCTCCGACGCCGACCTGCGCACCGCCTACCGCAAGCTCGCCATGAAATGGCACCCGGACAAGTGCGGCGCCGCCGGGAGCTCAGCCGGCGGCGGTGCAGAGGCGGCCAAGGTGAGGTTCCAGAAGATCCAGGGAGCCTACGCCGTGCTCTCCGATCCCAACAAGAGGATCCTCTATGACGTCGGAGCCTACGACAGCGACGGCGATGATGATGGCGCCGGTGAAATTCTCGGCGACATTCTCGAGGCCATGAACAAAACCGGCCCTACGGAGAATGGCAAGAACGAGAGCTTCGAAGACCTGCAGAGGCAGTTCGAGGAGCTGTTCCTCCGGCCGCCGACGTCGTCGTCGTTCCGGTCGGCGCAAGAGGACGCTGGGAAGTCTTCAAAGAGAAGGGCCGGAAGAACGTAGAAGTACGTACTTTTGGCCGAAGATTTTTGTACTGCGAGATTTTTGAATCTATTTCGTACGTGCAGTGCTCAAGACGACCGTCATTTGTGCTAATAATTAAGCTGATTGATCAAGAAGAAAACGATTCAGATAATGATATGACGCACTGATGATCTAGGGCAGTAACCTGTAATCTCAATAACACCTTTGGCAGACGTCATTCGGTTTGCATGTATGCAGGTGGCTATTAATTTGCCTAGCTAGAAATTGGCCAATTT AAGTTTGGCCACACGTCAATTCTTATATGAATATGTGCAATATTGTCAAATCTGGGTACTTCTCCCTGATGAATTAAATGAAGAAAAATGAGG ] [-] EMBL CB624095 [ GCACCCGGACAAGTGCGGCGCCGCCGGGAGCTCAGCCGGCGGCGGTGCAGAGGCGGCCAAGGTGAGGTTCCAGAAGATCCAGGGAGCCTACGCCGTGCTCTCCGATCCCAACAAGAGGATCCTCTATGACGTCGGAGCCTACGACAGCGACGGCGATGATGATGGCGCCGGTGAAATTCTCGGCGACATTCTGGAGGCCATGAACAAAACCGGCCCTACGGAGAATGGCAAGAACGAGAGCTTCGAAGACCTGCAGAGGCAGTTCGAGGAGCTGTTCCTCCGGCCGCCGACGTCGTCGTCGTTCCGGTCGGCGCAAGAGGACGCTGGGAAGTCTTCAAAGAGAAGGGCCGGAAGAACGTAGAAGTACGTACTTTTGGCCGAAGATTTTTGTACTGCGAGATTTTTGAATCTATTTCGTACGTGCAGTGCTCAAGACGACCGTCATTTGTGCTAATAATTAAGCTGATTGATCAAGAAGAAAACGATTCAGATAATGATATGACGCACTGATGATCTAGGGCAGTAACCTGTAATCTCAATAACACCTTTGGCAGACGTCATTCGGTTTGCATGTATGCAGGTGGCTATTAATTTGCCTAGCTAGAAATTGGCCAATTTAAAGTTTGGCCACACGTCAATTCTTATATGAATATGTGCAATATTGTCAAATCTGGGTACTTCTCCCTGATGAATTAAATGAAGAAAAATGAGGGCTAATGATCAAAAAAAAAAGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5615#0 AGCGTGCTCCTCCTCTCCTCCACACACAATCCGATCGGTAGCCGCGGGCTCGTTGTTGCG 60 consensus_5615#1 ------------------------------------------------------------ consensus_5615#0 ATGGCCGGCAAGAACGGGAGCCTCTACGCGGTGCTCGGCGTCGCCAGCGACTGCTCCGAC 120 consensus_5615#1 ------------------------------------------------------------ consensus_5615#0 GCCGACCTGCGCACCGCCTACCGCAAGCTCGCCATGGTACGGTGCTGATTCCTCTGCTTT 180 consensus_5615#1 ------------------------------------------------------------ consensus_5615#0 GCTCTGTTTTTTTTTTTTTTTGCCGATTTAACCGTCTCCCAGTGGCTGTTTGTCTCCGGG 240 consensus_5615#1 ------------------------------------------------------------ consensus_5615#0 CAGAAATGGCACCCGGACAAGTGCGGCGCCGCCGGGAGCTCAGCCGGCGGCGGTGCAGAG 300 consensus_5615#1 ------------------------------------------------------------ consensus_5615#0 GCGGCCAAGGTGAGGTTCCAGAAGATCCAGGGAGCCTACGCCGGTAATTAAATCTCAGCC 360 consensus_5615#1 ------------------------------------------------------------ consensus_5615#0 ACCTTCTTCGTCTTCCTCTGCTTCTGACCAGTGCTCAGAGCACAAGCTGCCATTGATTTC 420 consensus_5615#1 ------------------------------------------------------------ consensus_5615#0 GGACGCTGAGATTTTTTTTTAGCTTCTCGTTGATCGGTCTTCGCTGCTGTTACGGTCTGT 480 consensus_5615#1 ------------------------------------------------------------ consensus_5615#0 CCGTTCCCGTTGTTTCACCATTCTGACAGCGACGTGGTTTTAACTGAACAGTGCTCTCCG 540 consensus_5615#1 ------------------------------------------------------------ consensus_5615#0 ATCCCAACAAGAGGATCCTCTATGACGTCGGAGCCTACGACAGCGACGGCGATGATGATG 600 consensus_5615#1 ------------------------------------------------------------ consensus_5615#0 TAACAGCATTTTCCGGCCTTTTTTATCTCTTTTTTTTGCACCAATCAATGATAAAGATAT 660 consensus_5615#1 ------------------------------------------------------------ consensus_5615#0 TTTGTGGCCGGCTTGTGTGCTGACTTGGTCGTGCCAATTCACGTGCAGGGCGCCGGTGAA 720 consensus_5615#1 ------------------------------------------------------------ consensus_5615#0 ATTCTCGGCGACATTCTCGAGGCCATGAACAAAACCGGCCCTACGGTAACAAACCTATCT 780 consensus_5615#1 ------------------------------------------------------------ consensus_5615#0 GAATTCGAATTTCGACGTGAACTTTAAAAATTCGATGTAAATTCACACCCTGTTCATGCA 840 consensus_5615#1 ------------------------------------------------------------ consensus_5615#0 TGTTGGTGTGGTGAACGCGTGCGCAGGAGAATGGCAAGAACGAGAGCTTCGAAGACCTGC 900 consensus_5615#1 ---------------------------------------------TCCACACACAATCCG 15 * * * * consensus_5615#0 AGAGGCAGTTCGAGGAGCTGTTCCTCCGGCCGCCGGCGCCGGCGCCGCCGACGTCGTCGT 960 consensus_5615#1 ATCGGTAGC-CGCGGGCTCGTTGTTGCGATGGCCGGC---AAGAACGGGAGCCTCTACGC 71 * ** ** ** ** *** * ** ****** ** * ** ** consensus_5615#0 CGTTCCGGTCGGCGGTACGTGACTGTCGTGTCGTACACCACTGATTCCTCTG--ACTGAT 1018 consensus_5615#1 GGTGCTCGGCGTCGCCA-GCGACTGCTCCGACGCCGACCTGCGCACCGCCTACCGCAAGC 130 ** * * ** ** * * ***** * ** *** * * ** * consensus_5615#0 ACGACGAGACACAGCAGTTACCTAGCTGTATGTCCTTTCTGATTAGTGACTAAACAGGCC 1078 consensus_5615#1 TCGCCATGAAATGGCACCCGGACAA--GTGCGGCGCCGCCGGGAGCTCAGCCGGCGGCGG 188 ** * ** * *** * ** * * * * * * * * consensus_5615#0 ATCTTTTTCTTCAGAAATTAACTTTCCCATTTTTTTTAGAGTGTGCGTCGCTTTCTCTGA 1138 consensus_5615#1 TGCAGAGGCGGCCAAGGTGAGGTTCCAGAAGATCCAGGGAGCCTACGCCGTGCTCTCCGA 248 * * * * * * ** * * * *** * ** ** **** ** consensus_5615#0 CAACTGTTTGCACACAAGCATGTCGGGAGAAGAGCACGAGCTGTCGTTTTATACGGCATG 1198 consensus_5615#1 T-----------CCCAA------CAAGAGGATCCTCTATGACGTCGGAGCCTACGACA-G 290 * *** * *** * * **** **** ** * consensus_5615#0 CAAATTACAGTAATGGTTAGGTGCATTGCATCCTCTTGCCTGCCCAAGCTTAGAGAAGAT 1258 consensus_5615#1 CGA-CGGCGATGATGATGGCGCCGGTGAAATTCTCG-----GCGACATTCTCGAGG---- 340 * * * * *** * * * ** *** ** * * *** consensus_5615#0 TATCCATAAACAGT-TTGGTCGCTTAATTAATTATAAGCACAGAATAGGTTTTCTTGCGC 1317 consensus_5615#1 ---CCATGAACAAAACCGGCCCTACGGAGAATGGCAAGAACGAGA---GCTTCGAAGACC 394 **** **** ** * *** *** ** * * ** * * consensus_5615#0 TACATGGACACTGATTACGTACACAAGATTTAATAACCCTTGACTAACTCTGTATTTCTA 1377 consensus_5615#1 TGCAGAGGCA--------GTTCG-AGGAGCTGTT--CCTCCGGCCGCCGACGTCGTCGT- 442 * ** * ** ** * * ** * * ** * * * ** * * consensus_5615#0 TCTGTGCCTGATAATCTGCAGCAAGAGGACGCTGGGAAGTCTTCAAAGAGAAGGGCCGGA 1437 consensus_5615#1 --CGTTCC----GGTCGGC-GCAAGAGGACGCTGGGAAGTCTTCAAAGAGAAGGGCCGGA 495 ** ** ** ** **************************************** consensus_5615#0 AGAACGTAGAAGTACGTACTTTTGGCCGAAGATTTTTGTACTGCAACATTTTTGAATCTA 1497 consensus_5615#1 AGAACGTAGAAGTACGTACTTTTGGCCGAAGATTTTTGTACTGCGAGATTTTTGAATCTA 555 ******************************************** * ************* consensus_5615#0 TTTCGTACGTGCAGTGCTCAAGACGACCGTCATTTGTGCTAATAATTAAGCTGATTGATC 1557 consensus_5615#1 TTTCGTACGTGCAGTGCTCAAGACGACCGTCATTTGTGCTAATAATTAAGCTGATTGATC 615 ************************************************************ consensus_5615#0 AAGAAGAAAACGATTCAGATAATGATATGACGCACTGATGATCTAGGGCAGTAGCCTGTA 1617 consensus_5615#1 AAGAAGAAAACGATTCAGATAATGATATGACGCACTGATGATCTAGGGCAGTAACCTGTA 675 ***************************************************** ****** consensus_5615#0 ATCTCAATAACACCTTTGGCAGACGTCATTCGGTTTGCATGTATGCGGGTGGCTATTAAT 1677 consensus_5615#1 ATCTCAATAACACCTTTGGCAGACGTCATTCGGTTTGCATGTATGCAGGTGGCTATTAAT 735 ********************************************** ************* consensus_5615#0 TTGCCTAGCTAGAAATTGGCCAATTTAAAGTTTGGCCACACGTCAATTCTTATATGAATA 1737 consensus_5615#1 TTGCCTAGCTAGAAATTGGCCAATTTAA-GTTTGGCCACACGTCAATTCTTATATGAATA 794 **************************** ******************************* consensus_5615#0 TGTGCAATATTGTCAAATCTGGGTACTTCTCCCTGATGAATTAAATGAAGAAAAGTGAGG 1797 consensus_5615#1 TGTGCAATATTGTCAAATCTGGGTACTTCTCCCTGATGAATTAAATGAAGAAAAATGAGG 854 ****************************************************** ***** consensus_5615#0 ------------------------ consensus_5615#1 GCTAATGATCAAAAAAAAAAGGAA 878 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||