cluster # 5616

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Oryza sativa
cluster # 5616 cluster # 5616 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5616#0 length = 593 sequences # 1

consensus_5616#1 length = 588 sequences # 1
consensus_5616#2 length = 323 sequences # 1

consensusID : consensus_5616#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence

                              [AAGCACACACAGCGCGCTCACAGTGATCGGAGATGGCGAAGGACATTGAGGCGGCGGCGGCGGCGGAGGGCGGGGAGTACATGGCGAAGGACTACTCCGACCCGCCGCCGGTGCCGCTGATCGACGCGCAGGAGCTGACCAAGTGGTCCCTGTACCGCGCGGGGATCGCCGAGTGCGTGGCCACGCTGCTCTTCCCTTACTTCACGGCGGCCTCGGTCATCGGGTGCGGGCGCCTGTGGGACCCGGGCGCGAACGCCGGCGGAGCGCCATGCGACGCTGCCGGCCTTCCTCGGCATCTCCCGGCTGCTCCGCGCCTTGTCTGTTAGTCTTTTCTCCTGGCCCCTCGTAGTCGCGTGCGAGGGCGTTAGCGCCGGTGTGTGCGGGTGTCTCCTGGTCGGTTCGCTGGAGGCTGATCTCTCTGACACTTCACCTTCGTTGGCGTCACGTCGTGGGCACGCGCCCGCCCCCCCCCCCGCCCTGGGCCCGGCCGCCGCGACGTTGCGTGTCCGCGGGTTTGGTGCGCGTCTCGCTGCATTCGTTCCATCGCCTGTGCCCGTGTGGGCGGCTCGGGGCTGTGTCACGTCTTCAATACT]

[+] EMBL CA755676             [AAGCACACACAGCGCGCTCACAGTGATCGGAGATGGCGAAGGACATTGAGGCGGCGGCGGCGGCGGAGGGCGGGGAGTACATGGCGAAGGACTACTCCGACCCGCCGCCGGTGCCGCTGATCGACGCGCAGGAGCTGACCAAGTGGTCCCTGTACCGCGCGGGGATCGCCGAGTGCGTGGCCACGCTGCTCTTCCCTTACTTCACGGCGGCCTCGGTCATCGGGTGCGGGCGCCTGTGGGACCCGGGCGCGAACGCCGGCGGAGCGCCATGCGACGCTGCCGGCCTTCCTCGGCATCTCCCGGCTGCTCCGCGCCTTGTCTGTTAGTCTTTTCTCCTGGCCCCTCGTAGTCGCGTGCGAGGGCGTTAGCGCCGGTGTGTGCGGGTGTCTCCTGGTCGGTTCGCTGGAGGCTGATCTCTCTGACACTTCACCTTCGTTGGCGTCACGTCGTGGGCACGCGCCCGCCCCCCCCCCCGCCCTGGGCCCGGCCGCCGCGACGTTGCGTGTCCGCGGGTTTGGTGCGCGTCTCGCTGCATTCGTTCCATCGCCTGTGCCCGTGTGGGCGGCTCGGGGCTGTGTCACGTCTTCAATACT]




>consensus_5616#0
AAGCACACACAGCGCGCTCACAGTGATCGGAGATGGCGAAGGACATTGAGGCGGCGGCGG
CGGCGGAGGGCGGGGAGTACATGGCGAAGGACTACTCCGACCCGCCGCCGGTGCCGCTGA
TCGACGCGCAGGAGCTGACCAAGTGGTCCCTGTACCGCGCGGGGATCGCCGAGTGCGTGG
CCACGCTGCTCTTCCCTTACTTCACGGCGGCCTCGGTCATCGGGTGCGGGCGCCTGTGGG
ACCCGGGCGCGAACGCCGGCGGAGCGCCATGCGACGCTGCCGGCCTTCCTCGGCATCTCC
CGGCTGCTCCGCGCCTTGTCTGTTAGTCTTTTCTCCTGGCCCCTCGTAGTCGCGTGCGAG
GGCGTTAGCGCCGGTGTGTGCGGGTGTCTCCTGGTCGGTTCGCTGGAGGCTGATCTCTCT
GACACTTCACCTTCGTTGGCGTCACGTCGTGGGCACGCGCCCGCCCCCCCCCCCGCCCTG
GGCCCGGCCGCCGCGACGTTGCGTGTCCGCGGGTTTGGTGCGCGTCTCGCTGCATTCGTT
CCATCGCCTGTGCCCGTGTGGGCGGCTCGGGGCTGTGTCACGTCTTCAATACT

consensusID : consensus_5616#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 588
fasta sequence

                              [ACAGCGCGCTCACAGTGATCGGAGATGGCGAAGGACATTGAGGCGGCGGCGGCGGCGGAGGGCGGGGAGTACATGGCGAAGGACTACTCCGACCCGCCGCCGGCGCCGCTGATCGACGCGGAGGAGCTGACCAAGTGGTCCCTGTACCGCGCGGTGATCGCCGAGTTCGTGGCCACGCTGCTCTTCCTCTACATCACGGTGGCCACGGTCATCGGGTACAAGCACCAGTCGGACCCGGGCGCGAACGCCGCCGACGCCGCGTGCAGCGGCGTCGGCATCCTCGGCATCGCGTGGGCGTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCGTGTCCGGTGGCCACATCAACCCGGCGGTGACGTTCGTGATCTTCCTGACGCGCAAGGTGTCGCTGCGGCGCGCGGTGCTGTCCTGGCGAGCGCAGAGTCTCGGCGCCTTCTGCGAGGTCGGTCTCCCCGGGGGGGCCCGAGCGGCGTGGTCGGGGGGTGTGGCGGTCGCCGGCCCCGAGGTCAGCGGCGGCGACTCCTCGGGAGCCGGTCGGCGCGGCACGCCCGTGCGTCGCTGCGGGGTGGGCTAC]

[+] EMBL CA755123             [ACAGCGCGCTCACAGTGATCGGAGATGGCGAAGGACATTGAGGCGGCGGCGGCGGCGGAGGGCGGGGAGTACATGGCGAAGGACTACTCCGACCCGCCGCCGGCGCCGCTGATCGACGCGGAGGAGCTGACCAAGTGGTCCCTGTACCGCGCGGTGATCGCCGAGTTCGTGGCCACGCTGCTCTTCCTCTACATCACGGTGGCCACGGTCATCGGGTACAAGCACCAGTCGGACCCGGGCGCGAACGCCGCCGACGCCGCGTGCAGCGGCGTCGGCATCCTCGGCATCGCGTGGGCGTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCGTGTCCGGTGGCCACATCAACCCGGCGGTGACGTTCGTGATCTTCCTGACGCGCAAGGTGTCGCTGCGGCGCGCGGTGCTGTCCTGGCGAGCGCAGAGTCTCGGCGCCTTCTGCGAGGTCGGTCTCCCCGGGGGGGCCCGAGCGGCGTGGTCGGGGGGTGTGGCGGTCGCCGGCCCCGAGGTCAGCGGCGGCGACTCCTCGGGAGCCGGTCGGCGCGGCACGCCCGTGCGTCGCTGCGGGGTGGGCTAC]




>consensus_5616#1
ACAGCGCGCTCACAGTGATCGGAGATGGCGAAGGACATTGAGGCGGCGGCGGCGGCGGAG
GGCGGGGAGTACATGGCGAAGGACTACTCCGACCCGCCGCCGGCGCCGCTGATCGACGCG
GAGGAGCTGACCAAGTGGTCCCTGTACCGCGCGGTGATCGCCGAGTTCGTGGCCACGCTG
CTCTTCCTCTACATCACGGTGGCCACGGTCATCGGGTACAAGCACCAGTCGGACCCGGGC
GCGAACGCCGCCGACGCCGCGTGCAGCGGCGTCGGCATCCTCGGCATCGCGTGGGCGTTC
GGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCGTGTCCGGTGGCCACATCAAC
CCGGCGGTGACGTTCGTGATCTTCCTGACGCGCAAGGTGTCGCTGCGGCGCGCGGTGCTG
TCCTGGCGAGCGCAGAGTCTCGGCGCCTTCTGCGAGGTCGGTCTCCCCGGGGGGGCCCGA
GCGGCGTGGTCGGGGGGTGTGGCGGTCGCCGGCCCCGAGGTCAGCGGCGGCGACTCCTCG
GGAGCCGGTCGGCGCGGCACGCCCGTGCGTCGCTGCGGGGTGGGCTAC

consensusID : consensus_5616#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence

                              [ACACAGCGCGCTCACAGTGATCGGAGATGGCGAAGGACATTGAGGNGGCGGCGGCGGCGGAGGGCGGGGAGTACATGGCGAAGGACTACTCCGACCCGCCGCCGGNCACGCTGATCGACGCGGAGNAGCTGACCAAGTGGTCCCTGTACCGCGCGGTNATCGCCGAGTTCGTGGNCACGCTGATCTTACTCTACATCACGGTGGCCACGGTCATCGGGTACAAGCACCAGTCGGACCCGGGCGCGAACGCNTCAACGTCGCGTGCAGGTTATTCCNCNTTCGCNAGATACCCNTNGCANCATTCGGCNANATNATCTNAACGG]

[+] EMBL OSR1924A             [ACACAGCGCGCTCACAGTGATCGGAGATGGCGAAGGACATTGAGGNGGCGGCGGCGGCGGAGGGCGGGGAGTACATGGCGAAGGACTACTCCGACCCGCCGCCGGNCACGCTGATCGACGCGGAGNAGCTGACCAAGTGGTCCCTGTACCGCGCGGTNATCGCCGAGTTCGTGGNCACGCTGATCTTACTCTACATCACGGTGGCCACGGTCATCGGGTACAAGCACCAGTCGGACCCGGGCGCGAACGCNTCAACGTCGCGTGCAGGTTATTCCNCNTTCGCNAGATACCCNTNGCANCATTCGGCNANATNATCTNAACGG]




>consensus_5616#2
ACACAGCGCGCTCACAGTGATCGGAGATGGCGAAGGACATTGAGGNGGCGGCGGCGGCGG
AGGGCGGGGAGTACATGGCGAAGGACTACTCCGACCCGCCGCCGGNCACGCTGATCGACG
CGGAGNAGCTGACCAAGTGGTCCCTGTACCGCGCGGTNATCGCCGAGTTCGTGGNCACGC
TGATCTTACTCTACATCACGGTGGCCACGGTCATCGGGTACAAGCACCAGTCGGACCCGG
GCGCGAACGCNTCAACGTCGCGTGCAGGTTATTCCNCNTTCGCNAGATACCCNTNGCANC
ATTCGGCNANATNATCTNAACGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5616#1      --------ACAGCGCGCTCACAGTGATCGGAGATGGCGAAGGACATTGAGGCGGCGGCGG 52
consensus_5616#2      ------ACACAGCGCGCTCACAGTGATCGGAGATGGCGAAGGACATTGAGGNGGCGGCGG 54
consensus_5616#0      AAGCACACACAGCGCGCTCACAGTGATCGGAGATGGCGAAGGACATTGAGGCGGCGGCGG 60
                              ******************************************* ********

consensus_5616#1      CGGCGGAGGGCGGGGAGTACATGGCGAAGGACTACTCCGACCCGCCGCCGGCGCCGCTGA 112
consensus_5616#2      CGGCGGAGGGCGGGGAGTACATGGCGAAGGACTACTCCGACCCGCCGCCGGNCACGCTGA 114
consensus_5616#0      CGGCGGAGGGCGGGGAGTACATGGCGAAGGACTACTCCGACCCGCCGCCGGTGCCGCTGA 120
                      ***************************************************   ******

consensus_5616#1      TCGACGCGGAGGAGCTGACCAAGTGGTCCCTGTACCGCGCGGTGATCGCCGAGTTCGTGG 172
consensus_5616#2      TCGACGCGGAGNAGCTGACCAAGTGGTCCCTGTACCGCGCGGTNATCGCCGAGTTCGTGG 174
consensus_5616#0      TCGACGCGCAGGAGCTGACCAAGTGGTCCCTGTACCGCGCGGGGATCGCCGAGTGCGTGG 180
                      ******** ** ******************************  ********** *****

consensus_5616#1      CCACGCTGCTCTTCCTCTACATCACGGTGGCCACGGTCATCGGGTACAAGCACCAGTCGG 232
consensus_5616#2      NCACGCTGATCTTACTCTACATCACGGTGGCCACGGTCATCGGGTACAAGCACCAGTCGG 234
consensus_5616#0      CCACGCTGCTCTTCCCTTACTTCACGGCGGCCTCGGTCATCGGGTGCGGGCGCCTGTGGG 240
                       ******* **** *  *** ****** **** ************ *  ** ** ** **

consensus_5616#1      ACCCGGGCGCGAACGCCGCCGACGCCGCGTGCAGCGGCGTCGGCAT-CCTCGGCAT-CGC 290
consensus_5616#2      ACCCGGGCGCGAACGCN-TCAACGTCGCGTGCAGGTTATTCCNCNT-TCGCNAGATACCC 292
consensus_5616#0      ACCCGGGCGCGAACGCCGGCGGAGCGCCATGCGACGCTGCCGGCCTTCCTCGGCAT-CTC 299
                      ****************   *   *   * ***        *  * *  * *   ** * *

consensus_5616#1      GTGG--GCGTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCGTGTCCGGT 348
consensus_5616#2      NTNGCANCATTCGGCNANATNATCTNAACGG----------------------------- 323
consensus_5616#0      CCGG--CTGCTCCGCGCCTTGTCTGTTAGTCTTTTCTCCTGGCCCCTCGTAGTCGCGTGC 357
                         *      ** **    *       *                                

consensus_5616#1      GGCCACATCAAC-CCGGCGGTGACGTTCGTGATCTTCCTGACGCGCAAGGTGTCGCTGCG 407
consensus_5616#2      ------------------------------------------------------------
consensus_5616#0      GAGGGCGTTAGCGCCGGTGTGTGCGGGTGTCTCCTGGTCGGTTCGCTGGAGGCTGATCTC 417
                                                                                  

consensus_5616#1      GCGCGCGGTGCTGTCCTGGCGAGCGCAGAGTC-TCGGCGC-CTTCTGCGAGGTCGGTCTC 465
consensus_5616#2      ------------------------------------------------------------
consensus_5616#0      TCTGACACTTC-ACCTTCGTTGGCGTCACGTCGTGGGCACGCGCCCGCCCCCCCCCCCGC 476
                                                                                  

consensus_5616#1      CCCGGGGGGGCCCGA-GCGGCGTGGTCGGGGGGTGTGGCGGTCGCCGGCCCCGAGGTCAG 524
consensus_5616#2      ------------------------------------------------------------
consensus_5616#0      CCTGGGCCCGGCCGCCGCGACGTTGCGTGTCCGCGGGTTTGGTGCGCGTCTCG----CTG 532
                                                                                  

consensus_5616#1      CGGCGGCGACTCCTCGGGAGCCGGTCGGCGCGGCACGCCCGTGCGTCGCTGCGGGGTGGG 584
consensus_5616#2      ------------------------------------------------------------
consensus_5616#0      CATTCGTTCCATCGCCTGTGCCCGTGTGGGCGGCTCGGGGCTGTGTCACGTCTTCAATAC 592
                                                                                  

consensus_5616#1      CTAC 588
consensus_5616#2      ----
consensus_5616#0      T--- 593