cluster # 5621

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Oryza sativa
cluster # 5621 cluster # 5621 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5621#0 length = 690 sequences # 2

consensus_5621#1 length = 640 sequences # 1

consensusID : consensus_5621#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 690
fasta sequence

                              [TTTTTTTTTTTTTTTTAACAAGGGTTAAACCATGTGAAATTATATCAAAACTTACCAACGGAATACAGATGTGATGCCTATGTCATTTAGCTGCTCTCAAGTACATATATGAAAGAAGAAAGAAGCAGAAAGCATAGAGCAAGACAGTGTAAATCATGAACCTTTTTCGATCCAATGTTTGAGCCGGTGGTAGTCGAGCTCGTCCATAACGTCTTCCGCATCATAAAGCAGATCTCTTAGACTTCCCAGTGATTGGGCTAGTAGCTTGTTGTCAATACTTCTTCCTTCGGCAGCAGCAAGCACCCTCTCCACAGCCTTCATCTCAAACTCAAGCCTCTCGATATCTTCAGCAAGCCCAATTTCATGAGTCCAGGCTTCCATCTGTTCAGTGAAAAAGCTCCCAAGGATGCTTTGCACCAGGCATCCTATCGCAGCATCCACCACACTGCCAACTAACCACATCATTTCTCACCACACCAAGGCGTTGGCAGCAGCAAAAACTGAGGTTGCACAAAGGAGAAACCAAACAGATGGATTCAAAGAAAGTGAGAATGATGATGCATCAAAAAGACCGAAAGAAACTACCAGGAAGGCAGGAAGCAAGTAACTCTGTTAGCAGGTAGCTTCAACTAACACAGAGGCCCCAGATGAACTTATAACAGCTGCCCGGGAAACTGTGGGAACTGACTT]

[+] EMBL CA759675             [TTTTTTTTTTTTTTTTAACAAGGGTTAAACCATGTGAAATTATATCAAAACTTACCAACGGAATACAGATGTGATGCCTATGTCATTTAGCTGCTCTCAAGTACATATATGAAAGAAGAAAGAAGCAGAAAGCATAGAGCAAGACAGTGTAAATCATGAACCTTTTTCGATCCAATGTTTGAGCCGGTGGTAGTCGAGCTCGTCCATAACGTCTTCCGCATCATAAAGCAGATCTCTTAGACTTCCCAGTGATTGGGCTAGTAGCTTGTTGTCAATACTTCTTCCTTCGGCAGCAGCAAGCACCCTCTCCACAGCCTTCATCTCAAACTCAAGCCTCTCGATATCTTCAGCAAGCCCAATTTCATGAGTCCAGGCTTCCATCTGTTCAGTGAAAAAGCTCCCAAGGATGCTTTGCACCAGGCATCCTATCGCAGCATCCACCACACTGCCAACTAACCACATCATTTCTCACCACACCAAGGCGTTGGCAGCAGCAAAAACTGAGGTTGCACAAAGGAGAAACCAAACAGATGGATTCAAAGAAAGTGAGAATGATGATGCATCAAAAAGACCGAAAGAAACTACCAGGAAGGCAGGAAGCAAGTAACTCTGTTAGCAGGTAGCTTCAACTAACACAGAGGCCCCAGATGAACTTATAACAGCTGCCCGGGAAACTGTGGGAACTGACTT]
[-] EMBL AU030778             [                                                                                                                                                                                                                                                                                                     CAGCAAGCACCCTCTCCACAGCCTTCATCTCAAACTCAAGCTTCTCGATATCTTCAGCAAGCCCAATTTCATGAGTCCAGGCTTCCATCTGTTCAGTGAAGAAGCTCCCAAGGATGCTTTGCACCAGGCATCCTATCGCAGCATCCACCACACTGCCAACTAACCACATCATTTCTCACCACACCAAGGCGTTGGCAGCAGCAGAAACTGTGGTTGCACAAAGGAGAAACCAAACAGATGGATTCAAAGAAAGTGAGAATGATGATGCATCAGAAAGACCGAAAGAAACTACCn                                                                                                       ]




>consensus_5621#0
TTTTTTTTTTTTTTTTAACAAGGGTTAAACCATGTGAAATTATATCAAAACTTACCAACG
GAATACAGATGTGATGCCTATGTCATTTAGCTGCTCTCAAGTACATATATGAAAGAAGAA
AGAAGCAGAAAGCATAGAGCAAGACAGTGTAAATCATGAACCTTTTTCGATCCAATGTTT
GAGCCGGTGGTAGTCGAGCTCGTCCATAACGTCTTCCGCATCATAAAGCAGATCTCTTAG
ACTTCCCAGTGATTGGGCTAGTAGCTTGTTGTCAATACTTCTTCCTTCGGCAGCAGCAAG
CACCCTCTCCACAGCCTTCATCTCAAACTCAAGCCTCTCGATATCTTCAGCAAGCCCAAT
TTCATGAGTCCAGGCTTCCATCTGTTCAGTGAAAAAGCTCCCAAGGATGCTTTGCACCAG
GCATCCTATCGCAGCATCCACCACACTGCCAACTAACCACATCATTTCTCACCACACCAA
GGCGTTGGCAGCAGCAAAAACTGAGGTTGCACAAAGGAGAAACCAAACAGATGGATTCAA
AGAAAGTGAGAATGATGATGCATCAAAAAGACCGAAAGAAACTACCAGGAAGGCAGGAAG
CAAGTAACTCTGTTAGCAGGTAGCTTCAACTAACACAGAGGCCCCAGATGAACTTATAAC
AGCTGCCCGGGAAACTGTGGGAACTGACTT

consensusID : consensus_5621#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 640
fasta sequence

                              [TTCCCCTGNCCAAAGTGGTACCTGCCAATAATTNCCAATGGTTAACCCATGTGAAATTATATCAAACCTTCCCACCGGAATNCAGATGNGATGCCTATGTCATTTAGCTGCTCCTCAAGGTCCATNTATGAAAGAAGAAAGAACNCAGAAAGCATAGAGCAAGCCAGTGTAANTCATGACCNTTTTTCGATCCAATGTTTGAGCCGGTGGTAGTGGAGCTGGTCCATACCGTNTTCCGCATCATAAAGCAGATCTCTTAGNCTTCCCAGTGATTGGGCTAGTAGCTTGTTGTCAATACTTATTCCTTGGGCAGCAGCAAGCACCCTCTCCACAGCNTTCATCTCAAACTCAAGCTTCTCGATATCTTCAGCAAGCCCAATTTCATGAGTCCAGGCTTCCATCTGTTCAGTGAAGAAGCTCCCAAGGATGCTTTGCACCAGGCATCCTATCGCAGCATCCACCACACTGCCAACTACCCCCNTCATTTCTCACCACNCCAAGGCGTTGGCAGCAGCAGAAACTGTGGTTGCACAAAGGAGAACCCAAACAGATGGATTCAAAGAAAGTGAGAATGATGATGCATCAGAAAGNCCGAAAGAAACTNCCAGGAAGGCAGGAAGCAAGTAACTCNGTNAGCAGC]

[-] EMBL CA765334             [TTCCCCTGNCCAAAGTGGTACCTGCCAATAATTNCCAATGGTTAACCCATGTGAAATTATATCAAACCTTCCCACCGGAATNCAGATGNGATGCCTATGTCATTTAGCTGCTCCTCAAGGTCCATNTATGAAAGAAGAAAGAACNCAGAAAGCATAGAGCAAGCCAGTGTAANTCATGACCNTTTTTCGATCCAATGTTTGAGCCGGTGGTAGTGGAGCTGGTCCATACCGTNTTCCGCATCATAAAGCAGATCTCTTAGNCTTCCCAGTGATTGGGCTAGTAGCTTGTTGTCAATACTTATTCCTTGGGCAGCAGCAAGCACCCTCTCCACAGCNTTCATCTCAAACTCAAGCTTCTCGATATCTTCAGCAAGCCCAATTTCATGAGTCCAGGCTTCCATCTGTTCAGTGAAGAAGCTCCCAAGGATGCTTTGCACCAGGCATCCTATCGCAGCATCCACCACACTGCCAACTACCCCCNTCATTTCTCACCACNCCAAGGCGTTGGCAGCAGCAGAAACTGTGGTTGCACAAAGGAGAACCCAAACAGATGGATTCAAAGAAAGTGAGAATGATGATGCATCAGAAAGNCCGAAAGAAACTNCCAGGAAGGCAGGAAGCAAGTAACTCNGTNAGCAGC]




>consensus_5621#1
TTCCCCTGNCCAAAGTGGTACCTGCCAATAATTNCCAATGGTTAACCCATGTGAAATTAT
ATCAAACCTTCCCACCGGAATNCAGATGNGATGCCTATGTCATTTAGCTGCTCCTCAAGG
TCCATNTATGAAAGAAGAAAGAACNCAGAAAGCATAGAGCAAGCCAGTGTAANTCATGAC
CNTTTTTCGATCCAATGTTTGAGCCGGTGGTAGTGGAGCTGGTCCATACCGTNTTCCGCA
TCATAAAGCAGATCTCTTAGNCTTCCCAGTGATTGGGCTAGTAGCTTGTTGTCAATACTT
ATTCCTTGGGCAGCAGCAAGCACCCTCTCCACAGCNTTCATCTCAAACTCAAGCTTCTCG
ATATCTTCAGCAAGCCCAATTTCATGAGTCCAGGCTTCCATCTGTTCAGTGAAGAAGCTC
CCAAGGATGCTTTGCACCAGGCATCCTATCGCAGCATCCACCACACTGCCAACTACCCCC
NTCATTTCTCACCACNCCAAGGCGTTGGCAGCAGCAGAAACTGTGGTTGCACAAAGGAGA
ACCCAAACAGATGGATTCAAAGAAAGTGAGAATGATGATGCATCAGAAAGNCCGAAAGAA
ACTNCCAGGAAGGCAGGAAGCAAGTAACTCNGTNAGCAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5621#0      -----------------TTTTTTTTTTTTTTTTAACAAGGGTTAAACCATGTGAAATTAT 43
consensus_5621#1      TTCCCCTGNCCAAAGTGGTACCTGCCAATAATTNCCAATGGTTAACCCATGTGAAATTAT 60
                                        *   *     *  **  *** ****** **************

consensus_5621#0      ATCAAAACTTACCAACGGAATACAGATGTGATGCCTATGTCATTTAGCTGCTCTC--AAG 101
consensus_5621#1      ATCAAACCTTCCCACCGGAATNCAGATGNGATGCCTATGTCATTTAGCTGCTCCTCAAGG 120
                      ****** *** *** ****** ****** ************************    * *

consensus_5621#0      TACATATATGAAAGAAGAAAGAA-GCAGAAAGCATAGAGCAAGACAGTGTAAATCATGAA 160
consensus_5621#1      TCCATNTATGAAAGAAGAAAGAACNCAGAAAGCATAGAGCAAGCCAGTGTAANTCATGAC 180
                      * *** *****************  ****************** ******** ****** 

consensus_5621#0      CCTTTTTCGATCCAATGTTTGAGCCGGTGGTAGTCGAGCTCGTCCATAACGTCTTCCGCA 220
consensus_5621#1      CNTTTTTCGATCCAATGTTTGAGCCGGTGGTAGTGGAGCTGGTCCATACCGTNTTCCGCA 240
                      * ******************************** ***** ******* *** *******

consensus_5621#0      TCATAAAGCAGATCTCTTAGACTTCCCAGTGATTGGGCTAGTAGCTTGTTGTCAATACTT 280
consensus_5621#1      TCATAAAGCAGATCTCTTAGNCTTCCCAGTGATTGGGCTAGTAGCTTGTTGTCAATACTT 300
                      ******************** ***************************************

consensus_5621#0      CTTCCTTCGGCAGCAGCAAGCACCCTCTCCACAGCCTTCATCTCAAACTCAAGCCTCTCG 340
consensus_5621#1      ATTCCTTGGGCAGCAGCAAGCACCCTCTCCACAGCNTTCATCTCAAACTCAAGCTTCTCG 360
                       ****** *************************** ****************** *****

consensus_5621#0      ATATCTTCAGCAAGCCCAATTTCATGAGTCCAGGCTTCCATCTGTTCAGTGAAAAAGCTC 400
consensus_5621#1      ATATCTTCAGCAAGCCCAATTTCATGAGTCCAGGCTTCCATCTGTTCAGTGAAGAAGCTC 420
                      ***************************************************** ******

consensus_5621#0      CCAAGGATGCTTTGCACCAGGCATCCTATCGCAGCATCCACCACACTGCCAACTAACCAC 460
consensus_5621#1      CCAAGGATGCTTTGCACCAGGCATCCTATCGCAGCATCCACCACACTGCCAACTACCCCC 480
                      ******************************************************* ** *

consensus_5621#0      ATCATTTCTCACCACACCAAGGCGTTGGCAGCAGCAAAAACTGAGGTTGCACAAAGGAGA 520
consensus_5621#1      NTCATTTCTCACCACNCCAAGGCGTTGGCAGCAGCAGAAACTGTGGTTGCACAAAGGAGA 540
                       ************** ******************** ****** ****************

consensus_5621#0      AACCAAACAGATGGATTCAAAGAAAGTGAGAATGATGATGCATCAAAAAGACCGAAAGAA 580
consensus_5621#1      ACCCAAACAGATGGATTCAAAGAAAGTGAGAATGATGATGCATCAGAAAGNCCGAAAGAA 600
                      * ******************************************* **** *********

consensus_5621#0      ACTACCAGGAAGGCAGGAAGCAAGTAACTCTGTTAGCAGGTAGCTTCAACTAACACAGAG 640
consensus_5621#1      ACTNCCAGGAAGGCAGGAAGCAAGTAACTCNGTNAGCAGC-------------------- 640
                      *** ************************** ** *****                     

consensus_5621#0      GCCCCAGATGAACTTATAACAGCTGCCCGGGAAACTGTGGGAACTGACTT 690
consensus_5621#1      --------------------------------------------------