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Oryza sativa
cluster # 5623 cluster # 5623       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5623#0 length = 1040 sequences # 2  
consensus_5623#1 length = 449 sequences # 1  

consensusID : consensus_5623#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1040
fasta sequence
                              [GAGAGCACAGCGGAGGGAGATCGAACAAGAGACGAATAGCCAGCAAAATAATTAAAGAGGTAGCTGGAGAGAAGGAGAGAGAGAGAGAGAGAGATCGACGAGCTAGCTAGATGGCTTCTTTCGGCGTGGCCCCCGTTGGAAACGCGGCGAGCGGCAAGAAGATCTTCCGGACCAAGTGCGCGCAGTGCCACACGGTGGAGCGCGGGGGCGCGCACAAGCAGGGTCCCAACCTTCATGGCCTCTTCGGCCGCCAGTCCGGCACCACCCCCGGCTACGCCTACTCCACCGCCAACAAGAACATGGCCGTCGTCTGGGAGGAAGGCACCCTCTACGACTACCTGCTCAACCCTAAGAAGGTCAATTATATTAATTATTTCTCTTTTATTTACTCTAGCTAATTTAATTAATTGTTGTTGTATATGTATAATTCCTCAATCATCAACACCAAGATCGAGTACGTACGCAATTTGCTAATAATTAATAACGGCTGAGGCTGGCTTTGCAGTACATTCCGGGCACCAAGATGGTGTTCCCCGGCCTGAAGAAGCCGCAGGAGCGCACCGACCTCATCGCCTACCTCAAGGAATCTACCGCCTAACCCATCCATCCATCTATCCATCATCTGCTTGCTGCAAAATATATATATATATATCGTATCATTATGTTTGTGTACCCCTATGTTATACTCCTTCCGTATTTTAATGTATGACACCGTTGATTTTTCGACCAACGTTTGACCATTCGTTTTATTCAATTTTTTTTTGCAAATATGAAAATATTTATGTCATGCTTAAAGAACATTTGATGACGAATCAAGTTATAATAAAATAAATGATAATTACATAAATTTTTTGAATAAGACGAATGGTCAAACGTTGGATAAAAAGTCAACGGCGTGATATATTAAAATATGGAGGGAGTAGTATATAGCATCTATCTCAATAAGCATGCATGCATGCATCTGTTTAATTATCTGTTCCAACCATGCGTGCGTGCGTATTTGAAATTAAGAAGCATCGTATTTATCCTCTTCTAAAAAA]

[+] EMBL AK121277             [GAGAGCACAGCGGAGGGAGATCGAACAAGAGACGAATAGCCAGCAAAATAATTAAAGAGGTAGCTGGAGAGAAGGAGAGAGAGAGAGAGAGAGATCGACGAGCTAGCTAGATGGCTTCTTTCGGCGTGGCCCCCGTTGGAAACGCGGCGAGCGGCAAGAAGATCTTCCGGACCAAGTGCGCGCAGTGCCACACGGTGGAGCGCGGGGGCGCGCACAAGCAGGGTCCCAACCTTCATGGCCTCTTCGGCCGCCAGTCCGGCACCACCCCCGGCTACGCCTACTCCACCGCCAACAAGAACATGGCCGTCGTCTGGGAGGAAGGCACCCTCTACGACTACCTGCTCAACCCTAAGAAGGTCAATTATATTAATTATTTCTCTTTTATTTACTCTAGCTAATTTAATTAATTGTTGTTGTATATGTATAATTCCTCAATCATCAACACCAAGATCGAGTACGTACGCAATTTGCTAATAATTAATAACGGCTGAGGCTGGCTTTGCAGTACATTCCGGGCACCAAGATGGTGTTCCCCGGCCTGAAGAAGCCGCAGGAGCGCACCGACCTCATCGCCTACCTCAAGGAATCTACCGCCTAACCCATCCATCCATCTATCCATCATCTGCTTGCTGCAAAATATATATATATATATCGTATCATTATGTTTGTGTACCCCTATGTTATACTCCTTCCGTATTTTAATGTATGACACCGTTGATTTTTCGACCAACGTTTGACCATTCGTTTTATTCAATTTTTTTT                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU172653             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCATCTGCTTGCTGCAAAATATATATATATATATCGTATCATTATGTTTGTGTACCCCTATGTTATACTCCTTCCGTATTTTAATGTATGACACCGTTGATTTTTCGACCAACGTTTGACCATTCGTTTTATTCAATTTTTTTTTGCAAATATGAAAATATTTATGTCATGCTTAAAGAACATTTGATGACGAATCAAGTTATAATAAAATAAATGATAATTACATAAATTTTTTGAATAAGACGAATGGTCAAACGTTGGATAAAAAGTCAACGGCGTGATATATTAAAATATGGAGGGAGTAGTATATAGCATCTATCTCAATAAGCATGCATGCATGCATCTGTTTAATTATCTGTTCCAACCATGCGTGCGTGCGTATTTGAAATTAAGAAGCATCGTATTTATCCTCTTCTAAAAAA]


>consensus_5623#0 GAGAGCACAGCGGAGGGAGATCGAACAAGAGACGAATAGCCAGCAAAATAATTAAAGAGG TAGCTGGAGAGAAGGAGAGAGAGAGAGAGAGAGATCGACGAGCTAGCTAGATGGCTTCTT TCGGCGTGGCCCCCGTTGGAAACGCGGCGAGCGGCAAGAAGATCTTCCGGACCAAGTGCG CGCAGTGCCACACGGTGGAGCGCGGGGGCGCGCACAAGCAGGGTCCCAACCTTCATGGCC TCTTCGGCCGCCAGTCCGGCACCACCCCCGGCTACGCCTACTCCACCGCCAACAAGAACA TGGCCGTCGTCTGGGAGGAAGGCACCCTCTACGACTACCTGCTCAACCCTAAGAAGGTCA ATTATATTAATTATTTCTCTTTTATTTACTCTAGCTAATTTAATTAATTGTTGTTGTATA TGTATAATTCCTCAATCATCAACACCAAGATCGAGTACGTACGCAATTTGCTAATAATTA ATAACGGCTGAGGCTGGCTTTGCAGTACATTCCGGGCACCAAGATGGTGTTCCCCGGCCT GAAGAAGCCGCAGGAGCGCACCGACCTCATCGCCTACCTCAAGGAATCTACCGCCTAACC CATCCATCCATCTATCCATCATCTGCTTGCTGCAAAATATATATATATATATCGTATCAT TATGTTTGTGTACCCCTATGTTATACTCCTTCCGTATTTTAATGTATGACACCGTTGATT TTTCGACCAACGTTTGACCATTCGTTTTATTCAATTTTTTTTTGCAAATATGAAAATATT TATGTCATGCTTAAAGAACATTTGATGACGAATCAAGTTATAATAAAATAAATGATAATT ACATAAATTTTTTGAATAAGACGAATGGTCAAACGTTGGATAAAAAGTCAACGGCGTGAT ATATTAAAATATGGAGGGAGTAGTATATAGCATCTATCTCAATAAGCATGCATGCATGCA TCTGTTTAATTATCTGTTCCAACCATGCGTGCGTGCGTATTTGAAATTAAGAAGCATCGT ATTTATCCTCTTCTAAAAAA



consensusID : consensus_5623#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence
                              [AGCTAGATGGCTTCTTTCGGCGTGGCCCCCGTTGGAAACGCGGCGAGCGGCAAGAAGATCTTCCGGACCAAGTGCGCGCAGTGCCACACGGTGGAGCGCGGGGGCGCGCACAAGCAGGGTCCCAACCTTCATGGCCTCTTCGGCCGCCAGTCCGGCACCACCCCCGGCTACGCCTACTCCACCGCCAACAAGAACATGGCCGTCGTCTGGGAGGAAGGCACCCTCTACGACTACCTGCTCAACCCTAAGAAGTACATTCCGGGCACCAAGATGGTGTTCCCCGGCCTGAAGAAGCCGCAGGAGCGCACCGACCTCATCGCCTACCTCAAGGAATCTACCGCCTAACCCATCCATCCATCTATCCATCATCTGCTTGCTGCAAAATATATATATATATATCGTATCATTATGTTTGTGTACCCCTATGTTATACTCCTTCCGTATTTTAA]

[+] EMBL AU172652             [AGCTAGATGGCTTCTTTCGGCGTGGCCCCCGTTGGAAACGCGGCGAGCGGCAAGAAGATCTTCCGGACCAAGTGCGCGCAGTGCCACACGGTGGAGCGCGGGGGCGCGCACAAGCAGGGTCCCAACCTTCATGGCCTCTTCGGCCGCCAGTCCGGCACCACCCCCGGCTACGCCTACTCCACCGCCAACAAGAACATGGCCGTCGTCTGGGAGGAAGGCACCCTCTACGACTACCTGCTCAACCCTAAGAAGTACATTCCGGGCACCAAGATGGTGTTCCCCGGCCTGAAGAAGCCGCAGGAGCGCACCGACCTCATCGCCTACCTCAAGGAATCTACCGCCTAACCCATCCATCCATCTATCCATCATCTGCTTGCTGCAAAATATATATATATATATCGTATCATTATGTTTGTGTACCCCTATGTTATACTCCTTCCGTATTTTAA]


>consensus_5623#1 AGCTAGATGGCTTCTTTCGGCGTGGCCCCCGTTGGAAACGCGGCGAGCGGCAAGAAGATC TTCCGGACCAAGTGCGCGCAGTGCCACACGGTGGAGCGCGGGGGCGCGCACAAGCAGGGT CCCAACCTTCATGGCCTCTTCGGCCGCCAGTCCGGCACCACCCCCGGCTACGCCTACTCC ACCGCCAACAAGAACATGGCCGTCGTCTGGGAGGAAGGCACCCTCTACGACTACCTGCTC AACCCTAAGAAGTACATTCCGGGCACCAAGATGGTGTTCCCCGGCCTGAAGAAGCCGCAG GAGCGCACCGACCTCATCGCCTACCTCAAGGAATCTACCGCCTAACCCATCCATCCATCT ATCCATCATCTGCTTGCTGCAAAATATATATATATATATCGTATCATTATGTTTGTGTAC CCCTATGTTATACTCCTTCCGTATTTTAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5623#0      GAGAGCACAGCGGAGGGAGATCGAACAAGAGACGAATAGCCAGCAAAATAATTAAAGAGG 60
consensus_5623#1      ------------------------------------------------------------
                                                                                  

consensus_5623#0      TAGCTGGAGAGAAGGAGAGAGAGAGAGAGAGAGATCGACGAGCTAGCTAGATGGCTTCTT 120
consensus_5623#1      --------------------------------------------AGCTAGATGGCTTCTT 16
                                                                  ****************

consensus_5623#0      TCGGCGTGGCCCCCGTTGGAAACGCGGCGAGCGGCAAGAAGATCTTCCGGACCAAGTGCG 180
consensus_5623#1      TCGGCGTGGCCCCCGTTGGAAACGCGGCGAGCGGCAAGAAGATCTTCCGGACCAAGTGCG 76
                      ************************************************************

consensus_5623#0      CGCAGTGCCACACGGTGGAGCGCGGGGGCGCGCACAAGCAGGGTCCCAACCTTCATGGCC 240
consensus_5623#1      CGCAGTGCCACACGGTGGAGCGCGGGGGCGCGCACAAGCAGGGTCCCAACCTTCATGGCC 136
                      ************************************************************

consensus_5623#0      TCTTCGGCCGCCAGTCCGGCACCACCCCCGGCTACGCCTACTCCACCGCCAACAAGAACA 300
consensus_5623#1      TCTTCGGCCGCCAGTCCGGCACCACCCCCGGCTACGCCTACTCCACCGCCAACAAGAACA 196
                      ************************************************************

consensus_5623#0      TGGCCGTCGTCTGGGAGGAAGGCACCCTCTACGACTACCTGCTCAACCCTAAGAAGGTCA 360
consensus_5623#1      TGGCCGTCGTCTGGGAGGAAGGCACCCTCTACGACTACCTGCTCAACCCTAAGAAG---- 252
                      ********************************************************    

consensus_5623#0      ATTATATTAATTATTTCTCTTTTATTTACTCTAGCTAATTTAATTAATTGTTGTTGTATA 420
consensus_5623#1      ------------------------------------------------------------
                                                                                  

consensus_5623#0      TGTATAATTCCTCAATCATCAACACCAAGATCGAGTACGTACGCAATTTGCTAATAATTA 480
consensus_5623#1      ------------------------------------------------------------
                                                                                  

consensus_5623#0      ATAACGGCTGAGGCTGGCTTTGCAGTACATTCCGGGCACCAAGATGGTGTTCCCCGGCCT 540
consensus_5623#1      -------------------------TACATTCCGGGCACCAAGATGGTGTTCCCCGGCCT 287
                                               ***********************************

consensus_5623#0      GAAGAAGCCGCAGGAGCGCACCGACCTCATCGCCTACCTCAAGGAATCTACCGCCTAACC 600
consensus_5623#1      GAAGAAGCCGCAGGAGCGCACCGACCTCATCGCCTACCTCAAGGAATCTACCGCCTAACC 347
                      ************************************************************

consensus_5623#0      CATCCATCCATCTATCCATCATCTGCTTGCTGCAAAATATATATATATATATCGTATCAT 660
consensus_5623#1      CATCCATCCATCTATCCATCATCTGCTTGCTGCAAAATATATATATATATATCGTATCAT 407
                      ************************************************************

consensus_5623#0      TATGTTTGTGTACCCCTATGTTATACTCCTTCCGTATTTTAATGTATGACACCGTTGATT 720
consensus_5623#1      TATGTTTGTGTACCCCTATGTTATACTCCTTCCGTATTTTAA------------------ 449
                      ******************************************                  

consensus_5623#0      TTTCGACCAACGTTTGACCATTCGTTTTATTCAATTTTTTTTTGCAAATATGAAAATATT 780
consensus_5623#1      ------------------------------------------------------------
                                                                                  

consensus_5623#0      TATGTCATGCTTAAAGAACATTTGATGACGAATCAAGTTATAATAAAATAAATGATAATT 840
consensus_5623#1      ------------------------------------------------------------
                                                                                  

consensus_5623#0      ACATAAATTTTTTGAATAAGACGAATGGTCAAACGTTGGATAAAAAGTCAACGGCGTGAT 900
consensus_5623#1      ------------------------------------------------------------
                                                                                  

consensus_5623#0      ATATTAAAATATGGAGGGAGTAGTATATAGCATCTATCTCAATAAGCATGCATGCATGCA 960
consensus_5623#1      ------------------------------------------------------------
                                                                                  

consensus_5623#0      TCTGTTTAATTATCTGTTCCAACCATGCGTGCGTGCGTATTTGAAATTAAGAAGCATCGT 1020
consensus_5623#1      ------------------------------------------------------------
                                                                                  

consensus_5623#0      ATTTATCCTCTTCTAAAAAA 1040
consensus_5623#1      --------------------
                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)