These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5626#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence [TGAAAAATAGAGATGAATCATTGTGACAACTCAGTAGCTTNCCTACGCTTGGTGATNCTTCCGTCCCTCGTGTCCCTCTATTTCTATGGCGAGTGGCTTGTGCACGACACTGGCCGGTCCAGGAGTTTTGGAGCCTTGTTCCTGCAGGTGTTGGGATTAGCTTCATTGAGACATTTTGATACTCTGACGCCCAAGTTGTTCCGAGTGATTCGGAGTTAGTGGTGGTGAAATTTCCACACTACAATACTATTTACATCTGCAATGACGCTGCCAACACTAGTCTTATCCTCTGAGGTTTCTTCCATATATCTGTGCTCTTCGTGTCCTTGAGAACTATATTACTGATAGGATGCCACTGTGTATCACTGTAATGTATTCCTGCATGGCCTAAAACTGCATATACTACAGATTGGTAGGCACCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU097560 [TGAAAAATAGAGATGAATCATTGTGACAACTCAGTAGCTTNCCTACGCTTGGTGATNCTTCCGTCCCTCGTGTCCCTCTATTTCTATGGCGAGTGGCTTGTGCACGACACTGGCCGGTCCAGGAGTTTTGGAGCCTTGTTCCTGCAGGTGTTGGGATTAGCTTCATTGAGACATTTTGATACTCTGACGCCCAAGTTGTTCCGAGTGATTCGGAGTTAGTGGTGGTGAAATTTCCACACTACAATACTATTTACATCTGCAATGACGCTGCCAACACTAGTCTTATCCTCTGAGGTTTCTTCCATATATCTGTGCTCTTCGTGTCCTTGAGAACTATATTACTGATAGGATGCCACTGTGTATCACTGTAATGTATTCCTGCATGGCCTAAAACTGCATATACTACAGATTGGTAGGCACCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_5626#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 357 fasta sequence [AAGATTGCATACTTAATGAACTTGAGGTGCTTCAGTTGTTGAAATTAGTTGATCCCTTCAAAAAATGGCAGACATGATAATGAGGAAAAAAATGGCAGACATGATAATNAGGATGAGCTTGAAAGTATTTATCTCGATGAATTGGTGGAGCAGTCATTCCTTCAAGAAATTTATTTTTGATGTTCTTGATGACGACGAGTTGAAATTTCCTTTTTCTCAAATTAACTGAAAATAGAGATGAATCATTGTGACACTCAGTAGCTTCCTACGCTTGGTGATCTTCCGTCCCTCGTGTCCCNCTATTTTCTATGGCGAGTGGCTTTNTGCACGACACTGGACCGGNCCAGGGAGTTTTNG] [+] EMBL AU066339 [AAGATTGCATACTTAATGAACTTGAGGTGCTTCAGTTGTTGAAATTAGTTGATCCCTTCAAAAAATGGCAGACATGATAATGAGGAAAAAAATGGCAGACATGATAATNAGGATGAGCTTGAAAGTATTTATCTCGATGAATTGGTGGAGCAGTCATTCCTTCAAGAAATTTATTTTTGATGTTCTTGATGACGACGAGTTGAAATTTCCTTTTTCTCAAATTAACTGAAAATAGAGATGAATCATTGTGACACTCAGTAGCTTCCTACGCTTGGTGATCTTCCGTCCCTCGTGTCCCNCTATTTTCTATGGCGAGTGGCTTTNTGCACGACACTGGACCGGNCCAGGGAGTTTTNG] [+] EMBL AU066195 [AAGTTNGCATACTTAATGAACTTGAGGTGCTTCAGTTGTTGAAATTAGTTGATCCCTTCAAAAAATGGCAGACATGATAATGAGG AAAAAATGGCAG CATGATAATGAGGATGAGCTTGAAAGTATTTATCTCGATGAATTGGTGGAG AGTCATTCCTTCAAG AATTTATTTTTGATGTTCTTGATGCCGCCGAGTTGAAATTTCCTTTTTCTCAAATT ACTG AAATAGAG TG ATCATTGTG CACTCAGANGCTTCCTACGNTTGGTG TCTTCCG CCCTCGTG CCCTCTA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5626#0 TGAAAAATAGAGATGAATCATTGTGACAACTCAGTAGCTTNCCTACGCTTGGTGATNCTT 60 consensus_5626#1 ---------------------------AAGATTGCATACTTAATGAACTTGA-GGTGCTT 32 ** * * * * **** * * *** consensus_5626#0 CCGTCCCTCGTGTCCCTCTATTTCTATGGCGAGTGGCTTGTGCACGACACTGGCCGGTCC 120 consensus_5626#1 CAGTTGTTGAAATTAGTTGATCCCTTCAAAAAATGGC--AGACATGATAATGA--GG--- 85 * ** * * * ** ** * **** ** ** * ** ** consensus_5626#0 AGGAGTTTTGGAGCCTTGTTCCTGCAGGTGTTGGGATTAGCTTCATTG-AGACATTTTGA 179 consensus_5626#1 AAAAAAATGGCAGACATGATA--------ATNAGGATGAGCTTGAAAGTATTTATCTCGA 137 * * * * ** * ** * * **** ***** * * * ** * ** consensus_5626#0 TACTCTGACGCCCAAGTTGTTCC---GAGTGATTCGGAGTTAGTGGTGGTGAAATTTCCA 236 consensus_5626#1 TGAATTGGTGGAGCAGTCATTCCTTCAAGAAATTTATTTTTGATGTTCTTGATGACGACG 197 * ** * *** **** ** *** ** ** * *** * consensus_5626#0 CACTACAATACTATTTACATCTGCAATGACGCTGCCAACACTAGTCTTATCCTCTGAGGT 296 consensus_5626#1 AGTTGAAATTTCCTTTT--TCTCAAATTA-ACTGAAAATAGAGATGAATCATTGTGACAC 254 * *** *** *** *** * *** ** * * * *** consensus_5626#0 TTCTTCCATATATCTGTGCTCTTCGTGTCCTTGAGAACTATATTACTGATAGGATGCCAC 356 consensus_5626#1 T----CAGTAGCTTCCTACGCTTGGTGATCTTCCG-------TCCCTCGTGTCCCNCTAT 303 * * ** * * * *** *** *** * * ** * * * consensus_5626#0 TGTGTATCACTGTAATGTATTCCTGCATGGCCTAAAACTGCATATACTACAGATTGGTAG 416 consensus_5626#1 TTTCTATGGCG--AGTGGCTTTNTGCACGACACTGGACCGG----NCCAGGGAGTTTTNG 357 * * *** * * ** ** **** * * ** * * * ** * * * consensus_5626#0 GCACCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 451 consensus_5626#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||