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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5627#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1656 fasta sequence
[TTTTTCCATCCCCTTTCCTCCCCCTCTTGCCACGAACCCTTCGCCGTCGCCGGCGATCCCACCGACTCCCGGCCACCTCTGCTTCCCCGGCGATGTCTCTGCTTTGCGCTCCGCCGTCAATGCGCGTTGCCCGGGCTATGCGTCGCCTTCTCCCTGTGTCCTTGTGCGACCCGAGCCGCAAATCCAGGCCCCAGAGCCGCAGGATTGACAGAACTCAGGGAGATCTCCTGATCCGGTGGTTGTTCGGTTCGCTGCCCCCTCCTTGCATTGATAAAGGATTTTGTTGCAAACCACTAGTTATGGACCCATGAAACGGACGAGGAGGGCATCTTACTGAAATAGTGCAACGAGGAGTACTCTGCACACGGTGGTTGGATGGAGATATATCATAGCAACAACTGAACAAGTATCATCATAAGACAGTTCTGTGTCCTCTCCTTGGCATCGATGAAGGCTTCTATTATGCGATCCCACCTGGTATTGATGCACTGAATGAAATGCAAAGGAATTTTCAAACGCATTGTACAGCCTATGAGGGGTCCAGTGTTTGAGGCTACATAATATGAATGATAAAGATAAATCAAGGCTATCACAGAACACAGAATAAGGATCACTGAGCAATACGTAGGCTATCTTTCAAACATGTGCCAACTGGGGGATGGAAGAAGTATCCTCTTCTGGGAGGATTGCTGGATGCAGGAGGGAGGTATACGAGCCATTGCGCCTTCCATCTTCGAACATGTTCCTGTTCGAATCCGCAAACGCAGGACGGTCGCGGAAGCACTGCTCAATAAAGCATGGATCAGAGACATCAGCGGGTCACTTGGAGTTCAGGCAATCCGAGAATACCTCAAGCTCTGGTCACTTCTGCAAAATGCTGGTTGCAATCCCTCTGAGCAAGATGTGATCTGTTGGAAATGGGACAGCTCAGGACAATACTCCTCCAAGTCGGCATACAGAGCATTATTTCTAGGTCGTGTTCCATTTCAATCAGCACCGATATGGAAATCTCTAGCGCCGCCCAGATGCTGATTCTTTCTTTGGCTGGTCGTATTGGACAGATGCTGGACAGCGGATCGACTACGTCGTCGTGGCCTACCACATCCTGACAGATGCGTACTTTGTGATCAACACGACGAGAGTATTGATCACATTCTTGTTGGCTTGACAGATGCGTACTTTGTGATCAACACGACGAGAGTATTGATCACATTCTTGTTGGCTGCCCAGAATCCAGACAACTTTGGTGGTGGGTGTTAAGGGCAATTGGGCACCCTGAGTGTCTGCCGGTGGATGAACCATCATTCTACCAATGGCTCTGCAGCAGTCGAATAAGAATTTGAGAGCATCTTCGGCGGGGCTTTGACACGGTAGTCACGCTAGTGGCATGGACAATTTGGAAAGAAAGAAACGGCCGGATATTCAATCAGCAACAAAGGACCTGGGTGGACATCGTGAAGGGAATGGCAGCAGAGGCCACGCTATGGCGTCAAGCAAACCAAGCCATCCCAATCTTTAGGAGGGAATTTGGTAGCCAAAACAGACCGCGAGACGTACACCTTTGATTTCCTGCTTGTATCCTGTCTCAGTCCCCTGCTGCTTTGTGTTTGTCTGTAAATAACTTTTATTCCTCTTAATACAAAAATGCGCTCCTCG]
[+] EMBL AK070789 [TTTTTCCATCCCCTTTCCTCCCCCTCTTGCCACGAACCCTTCGCCGTCGCCGGCGATCCCACCGACTCCCGGCCACCTCTGCTTCCCCGGCGATGTCTCTGCTTTGCGCTCCGCCGTCAATGCGCGTTGCCCGGGCTATGCGTCGCCTTCTCCCTGTGTCCTTGTGCGACCCGAGCCGCAAATCCAGGCCCCAGAGCCGCAGGATTGACAGAACTCAGGGAGATCTCCTGATCCGGTGGTTGTTCGGTTCGCTGCCCCCTCCTTGCATTGATAAAGGATTTTGTTGCAAACCACTAGTTATGGACCCATGAAACGGACGAGGAGGGCATCTTACTGAAATAGTGCAACGAGGAGTACTCTGCACACGGTGGTTGGATGGAGATATATCATAGCAACAACTGAACAAGTATCATCATAAGACAGTTCTGTGTCCTCTCCTTGGCATCGATGAAGGCTTCTATTATGCGATCCCACCTGGTATTGATGCACTGAATGAAATGCAAAGGAATTTTCAAACGCATTGTACAGCCTATGAGGGGTCCAGTGTTTGAGGCTACATAATATGAATGATAAAGATAAATCAAGGCTATCACAGAACACAGAATAAGGATCACTGAGCAATACGTAGGCTATCTTTCAAACATGTGCCAACTGGGGGATGGAAGAAGTATCCTCTTCTGGGAGGATTGCTGGATGCAGGAGGGAGGTATACGAGCCATTGCGCCTTCCATCTTCGAACATGTTCCTGTTCGAATCCGCAAACGCAGGACGGTCGCGGAAGCACTGCTCAATAAAGCATGGATCAGAGACATCAGCGGGTCACTTGGAGTTCAGGCAATCCGAGAATACCTCAAGCTCTGGTCACTTCTGCAAAATGCTGGTTGCAATCCCTCTGAGCAAGATGTGATCTGTTGGAAATGGGACAGCTCAGGACAATACTCCTCCAAGTCGGCATACAGAGCATTATTTCTAGGTCGTGTTCCATTTCAATCAGCACCGATATGGAAATCTCTAGCGCCGCCCAGATGCTGATTCTTTCTTTGGCTGGTCGTATTGGACAGATGCTGGACAGCGGATCGACTACGTCGTCGTGGCCTACCACATCCTGACAGATGCGTACTTTGTGATCAACACGACGAGAGTATTGATCACATTCTTGTTGGCTTGACAGATGCGTACTTTGTGATCAACACGACGAGAGTATTGATCACATTCTTGTTGGCTGCCCAGAATCCAGACAACTTTGGTGGTGGGTGTTAAGGGCAATTGGGCACCCTGAGTGTCTGCCGGTGGATGAACCATCATTCTACCAATGGCTCTGCAGCAGTCGAATAAGAATTTGAGAGCATCTTCGGCGGGGCTTTGACACGGTAGTCACGCTAGTGGCATGGACAATTTGGAAAGAAAGAAACGGCCGGATATTCAATCAGCAACAAAGGACCTGGGTGGACATCGTGAAGGGAATGGCAGCAGAGGCCACGCTATGGCGTCAAGCAAACCAAGCCATCCCAATCTTTAGGAGGGAATTTGGTAGCCAAAACAGACCGCGAGACGTACACCTTTGATTTCCTGCTTGTATCCTGTCTCAGTCCCCTGCTGCTTTGTGTTTGTCTGTAAATAACTTTTATTCCTCTTAATACAAAAATGCGCTCCTCG]
consensusID : consensus_5627#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 847 fasta sequence
[TGATCGCTT-TCTGCGGTCGTAACTCGTAACCGGCTTGATGCTTCCGTTGTTTCTCCGGTTCGCAGAATAAGGTGGTTTTTGTGGCTATGAACAACGGTGATTGTATCTGTAATAGTATAGCATCTAACATTACCGAACAATCTCGTTTTGGTAGTTGGATATGCCTTTGGTTCAGGATTTCATGGCCAGATTAAGTTTAACGATATCAGCAAGACGAAATGCTTCAAACTTGGTGGGGGTTTACAGTGTGTTCCCCCCAAAGCTGCTGGGGTTTATATTTTCACTTAGTAAATACTACTAAACATCAGAAAATAATTGCCACTCGTTAGCCCCTAATGATTTTGACGCATTCTTTAAAAGACTCGTTCTAATGGGGATTGTCTAGCATTCTTGTTGGCTGCCCAGAATCCAGACAACTTTGGTGGTGGGTGTTAAGGGCAATTGGGCACCCTGAGTGTCTGCCGGTGAATGAACCATCATTCTACCAATGGCTCTGCAGCAGTCGAATAAGAATTCGAGAGCATCTTCAGCGGGGCTTTGACACGGTAGTCACGCTCGTGGCATGGACAATTTGGAAAGAAAGAAATGGCCGGATATTCAATCAGCAACAAAGGACCTGGGTGGACATCGTGAAGGGAATGGCGGCAGAGGCCACGCTATGGCGTCAAGCAAACCAAGCCATCCCAGCTCTGATCTTTAGGAGGGAATTTGGTAGCCAAAACAGACCGCGAGACGTACACCTTTGATTTCCTGCTTGTATCCTGTCTCAGTCCCATGCTGCTTTGTATTTGACTGTAAATAACTTTTATT-CCTCTTAATACAAAAATGCGCTCCTCGCGTATTCCTA]
[+] EMBL CB625675 [TGATCGCTT TCTGCGGTCGTAACTCGTAACCGGCTTGATGCTTCCGTTGTTTCTCCGGTTCGCAGAATAAGGTGGTTTTTGTGGCTATGAACAACGGTGATTGTATCTGTAATAGTATAGCATCTAACATTACCGAACAATCTCGTTTTGGTAGTTGGATATGCCTTTGGTTCAGGATTTCATGGCCAGATTAAGTTTAACGATATCAGCAAGACGAAATGCTTCAAACTTGGTGGGGGTTTACAGTGTGTTCCCCCCAAAGCTGCTGGGGTTTATATTTTCACTTAGTAAATACTACTAAACATCAGAAAATAATTGCCACTCGTTAGCCCCTAATGATTTTGACGCATTCTTTAAAAGACTCGTTCTAATGGGGATTGTCTAGCATTCTTGTTGGCTGCCCAGAATCCAGACAACTTTGGTGGTGGGTGTTAAGGGCAATTGGGCACCCTGAGTGTCTGCCGGTGAATGAACCATCATTCTACCAATGGCTCTGCAGCAGTCGAATAAGAATTCGAGAGCATCTTCAGCGGGGCTTTGACACGGTAGTCACGCTCGTGGCATGGACAATTTGGAAAGAAAGAAATGGCCGGATATTCAATCAGCAACAAAGGACCTGGGTGGACATCGTGAAGGGAATGGCGGCAGAGGCCACGCTATGGCGTCAAGCAAACCAAGCCATCCCAGCTCTGATCTTTAGGAGGGAATTTGGTAGCCAAAACAGACCGCGAGACGTACACCTTTGATTTCCTGCTTGTATCCTGTCTCAGTCCCATGCTGCTTTGTATTTGACTGTAAATAACTTTTATT CCTCTTAATACAAAAATGCGCTCCTCGCGTATTCCTA]
[+] EMBL CB625700 [TGATCGCTTCGCTGCGGTCGTAACTCGTAACCGGCTTGATGCTTCCGTTGTTTCTCCGGTTCGCAGAATAAGGTGGTTTTTGTGGCTATGAACAACGGTGATTGTATCTGTAATAGTATAGCATCTAACATTACCGAACAATCTCGTTTTGGTAGTTGGATATGCCTTTGGTTCAGGATTTCATGGCCAGATTAAGTTTAACGATATCAGCAAGACGAAATGCTTCAAACTTGGTGGGGGTTTACAGTGTGTTCCCCCCAAAGCTGCTGGGGTTTATATTTTCACTTAGTAAATACTACTAAACATCAGAAAATAATTGCCACTCGTTAGCCCCTAATGATTTTGACGCATTCTTTAAAAGACTCGTTCTAATGGGGATTGTCTAGCATTCTTGTTGGCTGCCCAGAATCCAGACAACTTTGGTGGTGGGTGTTAAGGGCAATTGGGCACCCTGAGTGTCTGCCGGTGAATGAACCATCATTCTACCAATGGCTCTGCAGCAGTCGAATAAGAATTCGAGAGCATCTTCAGCGGGGCTTTGACACGGTAGTCACGCTCGTGGCATGGACAATTTGGAAAGAAAGAAATGGCCGGATATTCAATCAGCAACAAAGGACCTGGGTGGACATCGTGAAGGGAATGGCGGCAGAGGCCACGCTATGGCGTCAAGCAAACCAAGCCATCCCAGCTCTGATCTTTAGGAGGGAATTTGGTAGCCAAAACAGACCGCGAGACGTACACCTTTGATTTCCTGCTTGTATCCTGTCTCAGTCCCATGCTGCTTTGTATTTGACTGTAAATAACTTTTATTCCCTCTT ATACAAAAATGCGCTCCTCGCGTATTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5627#0 TTTTTCCATCCCCTTTCCTCCCCCTCTTGCCACGAACCCTTCGCCGTCGCCGGCGATCCC 60
consensus_5627#1 ------------------------------------------------------------
consensus_5627#0 ACCGACTCCCGGCCACCTCTGCTTCCCCGGCGATGTCTCTGCTTTGCGCTCCGCCGTCAA 120
consensus_5627#1 ------------------------------------------------------------
consensus_5627#0 TGCGCGTTGCCCGGGCTATGCGTCGCCTTCTCCCTGTGTCCTTGTGCGACCCGAGCCGCA 180
consensus_5627#1 ------------------------------------------------------------
consensus_5627#0 AATCCAGGCCCCAGAGCCGCAGGATTGACAGAACTCAGGGAGATCTCCTGATCCGGTGGT 240
consensus_5627#1 ------------------------------------------------------------
consensus_5627#0 TGTTCGGTTCGCTGCCCCCTCCTTGCATTGATAAAGGATTTTGTTGCAAACCACTAGTTA 300
consensus_5627#1 ------------------------------------------------------------
consensus_5627#0 TGGACCCATGAAACGGACGAGGAGGGCATCTTACTGAAATAGTGCAACGAGGAGTACTCT 360
consensus_5627#1 ------------------------------------------------------------
consensus_5627#0 GCACACGGTGGTTGGATGGAGATATATCATAGCAACAACTGAACAAGTATCATCATAAGA 420
consensus_5627#1 ------------------------------------------------------------
consensus_5627#0 CAGTTCTGTGTCCTCTCCTTGGCATCGATGAAGGCTTCTATTATGCGATCCCACCTGGTA 480
consensus_5627#1 ------------------------------------------------------------
consensus_5627#0 TTGATGCACTGAATGAAATGCAAAGGAATTTTCAAACGCATTGTACAGCCTATGAGGGGT 540
consensus_5627#1 ------------------------------------------------------------
consensus_5627#0 CCAGTGTTTGAGGCTACATAATATGAATGATAAAGATAAATCAAGGCTATCACAGAACAC 600
consensus_5627#1 ------------------------------------------------------------
consensus_5627#0 AGAATAAGGATCACTGAGCAATACGTAGGCTATCTTTCAAACATGTGCCAACTGGGGGAT 660
consensus_5627#1 ------------------------------------------------------------
consensus_5627#0 GGAAGAAGTATCCTCTTCTGGGAGGATTGCTGGATGCAGGAGGGAGGTATACGAGCCATT 720
consensus_5627#1 ------------------------------------------------------------
consensus_5627#0 GCGCCTTCCATCTTCGAACATGTTCCTGTTCGAATCCGCAAACGCAGGACGGTCGCGGAA 780
consensus_5627#1 ------------------------------------------------------------
consensus_5627#0 GCACTGCTCAATAAAGCATGGATCAGAGACATCAGCGGGTCACTTGGAGTTCAGGCAATC 840
consensus_5627#1 ------------------------------------TGATCGCTTTCTGCGGTCGTAACT 24
* ** *** * * **
consensus_5627#0 CGAGAATACCTCAA-GCTCTGGTCACTTCTGCAAAATGCTGGTTGCAATCCCTCTGAGCA 899
consensus_5627#1 CGTAACCGGCTTGATGCTTCCGTTGTTTCTCCGGTTCGCAGAATAAGGTGGTTTTTG--T 82
** * ** * *** ** **** * ** * * * * *
consensus_5627#0 AGATGTGATCTGTTGGAAATGGGACAGCTCAGGACAATACTCCTCCAAGTCGGCATACAG 959
consensus_5627#1 GGCTATGAACAACGGTGATTGTATCTGT--AATAGTATAGCATCTAACATTACCGAACAA 140
* * *** * * * ** * * * * *** * * * ***
consensus_5627#0 AGCATTATTTCTAGGTCGTGTTCCATTTCAATCAGCACCGATATGGAAATCTCTAGCGCC 1019
consensus_5627#1 TCTCGTTTTGGTAGTTGGATATGCCTTTGGTTCAGGATTT-CATGGCCAGATTAAGTTTA 199
* ** *** * * * * *** **** * **** * * **
consensus_5627#0 GCCCAGATGCTGATTCTTTCTTTGGCTGGTCGTATTGGACAGATGCTGGACAGCGGATCG 1079
consensus_5627#1 AC---GATATCAGCAAGACGAAATGCT--TCAAACTTGGTGGGGGTTT-ACAGTGTGTTC 253
* *** *** ** * * * * * * **** * *
consensus_5627#0 ACTACGTCGTCGTGGCCTACCACATCCTGACAGA-TGCGTACTTTGTGATCAACACGACG 1138
consensus_5627#1 CCCCCAAAGCTGCTGGGGTTTATATTTTCACTTAGTAAATACTAC-TAAACATCAGAAAA 312
* * * * * * ** * ** * * **** * * ** ** *
consensus_5627#0 AGAGTATTGATCAC--ATTCTTGTTGGCTTGACAGATGCGTACTTTGTGATCAACACGAC 1196
consensus_5627#1 TAATTGCCACTCGTTAGCCCCTAATGATTTT---GACGCATTCTTTAAAAGACTCGTTCT 369
* * ** * * ** ** ** ** * **** * *
consensus_5627#0 GA-GAGTATTGATCA-CATTCTTGTTGGCTGCCCAGAATCCAGACAACTTTGGTGGTGGG 1254
consensus_5627#1 AATGGGGATTGTCTAGCATTCTTGTTGGCTGCCCAGAATCCAGACAACTTTGGTGGTGGG 429
* * * **** * ********************************************
consensus_5627#0 TGTTAAGGGCAATTGGGCACCCTGAGTGTCTGCCGGTGGATGAACCATCATTCTACCAAT 1314
consensus_5627#1 TGTTAAGGGCAATTGGGCACCCTGAGTGTCTGCCGGTGAATGAACCATCATTCTACCAAT 489
************************************** *********************
consensus_5627#0 GGCTCTGCAGCAGTCGAATAAGAATTTGAGAGCATCTTCGGCGGGGCTTTGACACGGTAG 1374
consensus_5627#1 GGCTCTGCAGCAGTCGAATAAGAATTCGAGAGCATCTTCAGCGGGGCTTTGACACGGTAG 549
************************** ************ ********************
consensus_5627#0 TCACGCTAGTGGCATGGACAATTTGGAAAGAAAGAAACGGCCGGATATTCAATCAGCAAC 1434
consensus_5627#1 TCACGCTCGTGGCATGGACAATTTGGAAAGAAAGAAATGGCCGGATATTCAATCAGCAAC 609
******* ***************************** **********************
consensus_5627#0 AAAGGACCTGGGTGGACATCGTGAAGGGAATGGCAGCAGAGGCCACGCTATGGCGTCAAG 1494
consensus_5627#1 AAAGGACCTGGGTGGACATCGTGAAGGGAATGGCGGCAGAGGCCACGCTATGGCGTCAAG 669
********************************** *************************
consensus_5627#0 CAAACCAAGCCATCCCA------ATCTTTAGGAGGGAATTTGGTAGCCAAAACAGACCGC 1548
consensus_5627#1 CAAACCAAGCCATCCCAGCTCTGATCTTTAGGAGGGAATTTGGTAGCCAAAACAGACCGC 729
***************** *************************************
consensus_5627#0 GAGACGTACACCTTTGATTTCCTGCTTGTATCCTGTCTCAGTCCCCTGCTGCTTTGTGTT 1608
consensus_5627#1 GAGACGTACACCTTTGATTTCCTGCTTGTATCCTGTCTCAGTCCCATGCTGCTTTGTATT 789
********************************************* *********** **
consensus_5627#0 TGTCTGTAAATAACTTTTATTCCTCTTAATACAAAAATGCGCTCCTCG---------- 1656
consensus_5627#1 TGACTGTAAATAACTTTTATTCCTCTTAATACAAAAATGCGCTCCTCGCGTATTCCTA 847
** *********************************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||