These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5639#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1766 fasta sequence [TTCTCTCCCCGCCAGCTCATGCCTCGCCTCCGTGCGCCGCGCTCCTCGCCCTCGCTCTCGCTCGTGCAGTGACATGTCACGCGCCGCCGCCTTCACCTCCTCCAACGGTCCATTGACGATGAAGACGGAAAGAGAGAGGGCGAGAGCTAGAGGGGATGGGGAGAGGAAGGCACGCAGCGAGTTCCCCTCCTTCCTTCGTAGCAATTGGTGCTTCCACCAGCAAGCTTTCTATAACGTGGAGTGTCGCCGACCACGGCCGCAGCCTCCTTCCTCTGGATTGGACTCCACTGGGAACTCCTCCGACATATCAAGTGTGCCTGTCCACCTTCTACCTCTGAGGCAAAGATTGGATCAAGCAAGCTGGATCTGACTCAGCACCTTGATCTGCTCAACAACCGGAGCCCCCACCTCCTTATACATCCCAAAGATGGATATGCATCTTCTGTATTCAGTTAGGATAAGGCTTCCAAGGTCTGCATAAAGCAACCGTGAGACTCACATGCTACAAAATTTTGGTTTCACATGATGTTTATGACTGAAAGTAATGCAGTATCAGGCATGCAAAAATAGAAGTTTAGTTGATCTACTGGTGCTTCATCTGCAAACACCATGGATCAGTTCATGACAGCATGACCATAAGGTTGGGAGGGACAAGAACAAGGTGTCCATTAAAGTTATGGAGATAATGCTGTTCAGGCCGGTCCAGTGAAAAGAGATTAAAGAGGATTAAATTGTTTGCAGCGATGGATCGAAGTTGGATGTATAGAAGAACTGTGCGACGTCATAGCAAATAGTATAGAAATTGAGTATTAAATTTTATAAACACCGCGGAGGAGGATAGGAAAAGAAGAAACAAGATTACATATGTTGTCAATGTGCATATTGCAAAAATGAGATATGTTTGATAGCAGAGTGGACGTACATGCTCATCTGATACAACGAGGATTCATGGAGGGCTACACATGTTGGGTGAAGCATGGAGAGCAAGAATCACTTGACGATGTTGCAGCTGCAGACAGAAGTGGAGCACAAAATTAGGAAAATGAAGATGAGCATAATATGTTTGTACCTTCTCCATTAGGCGGTGAAATGGTTGATGTGGATCACGATCTGATGCAAGACATATTACATGACGTTGAGGACACAGCTTACAACGAGAGAGATTCCATAAAATTCAGCAGGTTGGTCGGTGACTCGGAGACGCCTCTATACGCCGGATGCAAGGCAAAACACACCAAATTGTCAGATACCTTGAACCTAACGAAGCTGAAGGCAAGTAGTGGATGGACATAAAAGAGTTTCATAGATCTTTGGGGAATACTGAAAGCAATGCTATTTGATATATTGTTTACATATCTTGCTAGTTACATGATCAAACTGATTGGCACACATGCATCTCATCAATTTTTGGACCTGCACTGGAGCTAAGCAGATCTCCTAGGTCATTGCTGTTGTCGACTTAGTTCGCACCAACAAAGTTCTGGCACCATAGGCCAAGCGCATATTTTTCATCAACACCGTGCACTTGCGGACTTATTTGTAGCCATCACAAATAACAACAGGGAGAGGGGGCGGTGATGATAAGTTACCCGAGGGTGACCCGGCAGGGCCCTGGGGTGTGAGTTGTCTTTCTAAAATAAGAGTGTCTAATTCTATATATATCTATATATCCTATCAATAGCATTGGATCCTCTCATGCTCAATAAATTCATGTCTTATGTACAATTGCAATTCCAAATCAAATACTATGAAGCTTAAAATGTTGT] [+] EMBL AK065382 [TTCTCTCCCCGCCAGCTCATGCCTCGCCTCCGTGCGCCGCGCTCCTCGCCCTCGCTCTCGCTCGTGCAGTGACATGTCACGCGCCGCCGCCTTCACCTCCTCCAACGGTCCATTGACGATGAAGACGGAAAGAGAGAGGGCGAGAGCTAGAGGGGATGGGGAGAGGAAGGCACGCAGCGAGTTCCCCTCCTTCCTTCGTAGCAATTGGTGCTTCCACCAGCAAGCTTTCTATAACGTGGAGTGTCGCCGACCACGGCCGCAGCCTCCTTCCTCTGGATTGGACTCCACTGGGAACTCCTCCGACATATCAAGTGTGCCTGTCCACCTTCTACCTCTGAGGCAAAGATTGGATCAAGCAAGCTGGATCTGACTCAGCACCTTGATCTGCTCAACAACCGGAGCCCCCACCTCCTTATACATCCCAAAGATGGATATGCATCTTCTGTATTCAGTTAGGATAAGGCTTCCAAGGTCTGCATAAAGCAACCGTGAGACTCACATGCTACAAAATTTTGGTTTCACATGATGTTTATGACTGAAAGTAATGCAGTATCAGGCATGCAAAAATAGAAGTTTAGTTGATCTACTGGTGCTTCATCTGCAAACACCATGGATCAGTTCATGACAGCATGACCATAAGGTTGGGAGGGACAAGAACAAGGTGTCCATTAAAGTTATGGAGATAATGCTGTTCAGGCCGGTCCAGTGAAAAGAGATTAAAGAGGATTAAATTGTTTGCAGCGATGGATCGAAGTTGGATGTATAGAAGAACTGTGCGACGTCATAGCAAATAGTATAGAAATTGAGTATTAAATTTTATAAACACCGCGGAGGAGGATAGGAAAAGAAGAAACAAGATTACATATGTTGTCAATGTGCATATTGCAAAAATGAGATATGTTTGATAGCAGAGTGGACGTACATGCTCATCTGATACAACGAGGATTCATGGAGGGCTACACATGTTGGGTGAAGCATGGAGAGCAAGAATCACTTGACGATGTTGCAGCTGCAGACAGAAGTGGAGCACAAAATTAGGAAAATGAAGATGAGCATAATATGTTTGTACCTTCTCCATTAGGCGGTGAAATGGTTGATGTGGATCACGATCTGATGCAAGACATATTACATGACGTTGAGGACACAGCTTACAACGAGAGAGATTCCATAAAATTCAGCAGGTTGGTCGGTGACTCGGAGACGCCTCTATACGCCGGATGCAAGGCAAAACACACCAAATTGTCAGATACCTTGAACCTAACGAAGCTGAAGGCAAGTAGTGGATGGACATAAAAGAGTTTCATAGATCTTTGGGGAATACTGAAAGCAATGCTATTTGATATATTGTTTACATATCTTGCTAGTTACATGATCAAACTGATTGGCACACATGCATCTCATCAATTTTTGGACCTGCACTGGAGCTAAGCAGATCTCCTAGGTCATTGCTGTTGTCGACTTAGTTCGCACCAACAAAGTTCTGGCACCATAGGCCAAGCGCATATTTTTCATCAACACCGTGCACTTGCGGACTTATTTGTAGCCATCACAAATAACAACAGGGAGAGGGGGCGGTGATGATAAGTTACCCGAGGGTGACCCGGCAGGGCCCTGGGGTGTGAGTTGTCTTTCTAAAATAAGAGTGTCTAATTCTATATATATCTATATATCCTATCAATAGCATTGGATCCTCTCATGCTCAATAAATTCATGTCTTATGTACAATTGCAATTCCAAATCAAATACTATGAAGCTTAAAATGTTGT] consensusID : consensus_5639#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 835 fasta sequence [GCATGTACCAGAGCCGACGGATGGTTTGTTGGATCATTGATCAGTAGAGGAATGCATATCCTGTGTTACAAACATACAAATGTAGACTTGTTGGATCCAGCCTTTCTTATTTGCTTATGATTTTACCTCAATATCCTACAATGCTGGGTTTTTTTGGCTAGCCACTGAAGACCTCAAGGCTAATAACATTCAGAACCTTGCTAAATGTCAGAGAAGGCCTCTTAGAAGGTTCGAGTCACCACTGACGAAACCGATGATATGAAGGCTCATATGCCATCAATTGATCGAAGTTGGATGTATGCGAAAAATTTGAAACGCCGTTCTACGGAGTACAGAAAGGGCGTAATAAATTTTATGAACGCCGCGGAGGAGGATCGGATAAGAAGAAACAGTGATTACATGTGTTGTCCATGTGCAGATTGCAAGAATGAGAATATGTTTGATAGCGGAGAGGACGTACACGGTCATCTGATATAACGAGGATTCATGGAGGGCTATACATGTTGGGTGAAGCATGGAGAGCAAGAATCAGGAAGTGGAGCAGCAGCAGACAGAAGTGGTGCGCATAATCAGGAAGATGAAGATGAGCATGACATGTTTATACCTTCTCCATTGGGCGGTGAAATAGTTGATGTGGATCACGATCTGCTGCAAGACATGTTACGTGACATTCAGGACCCAGCCCAGAATGAGAGAGATGGAATGAAGTTCAGCAGGTTGGTAAGTGATTACAAGACGCCTTTGTACGCTGGATGCAAAGCAAAACACACTAAGTTGTCAGTTACCTTGGACCGAATGAAGCTGAAGGCAAGTAGTGGATGGACAAAAAAAAAGG] [-] EMBL CB634122 [GCATGTACCAGAGCCGACGGATGGTTTGTTGGATCATTGATCAGTAGAGGAATGCATATCCTGTGTTACAAACATACAAATGTAGACTTGTTGGATCCAGCCTTTCTTATTTGCTTATGATTTTACCTCAATATCCTACAATGCTGGGTTTTTTTGGCTAGCCACTGAAGACCTCAAGGCTAATAACATTCAGAACCTTGCTAAATGTCAGAGAAGGCCTCTTAGAAGGTTCGAGTCACCACTGACGAAACCGATGATATGAAGGCTCATATGCCATCAATTGATCGAAGTTGGATGTATGCGAAAAATTTGAAACGCCGTTCTACGGAGTACAGAAAGGGCGTAATAAATTTTATGAACGCCGCGGAGGAGGATCGGATAAGAAGAAACAGTGATTACATGTGTTGTCCATGTGCAGATTGCAAGAATGAGAATATGTTTGATAGCGGAGAGGACGTACACGGTCATCTGATATAACGAGGATTCATGGAGGGCTATACATGTTGGGTGAAGCATGGAGAGCAAGAATCAGGAAGTGGAGCAGCAGCAGACAGAAGTGGTGCGCATAATCAGGAAGATGAAGATGAGCATGACATGTTTATACCTTCTCCATTGGGCGGTGAAATAGTTGATGTGGATCACGATCTGCTGCAAGACATGTTACGTGACATTCAGGACCCAGCCCAGAATGAGAGAGATGGAATGAAGTTCAGCAGGTTGGTAAGTGATTACAAGACGCCTTTGTACGCTGGATGCAAAGCAAAACACACTAAGTTGTCAGTTACCTTGGACCGAATGAAGCTGAAGGCAAGTAGTGGATGGACAAAAAAAAAGG] [-] EMBL CB626639 [ AGTAGAGGAATGCATATCCTGTGTTACAAACATACAAATGTAGACTTGTTGGATCCAGCCTTTCTTATTTGCTTATGATTTTACCTCAATATCCTACAATGCTGGGTTTTTTTGGCTAGCCACTGAAGACTTCAAGGCTAATAACATTCAGAACCTTGCTAAATGTCAGAGAAGGCCTCTTAGAAGGTTCGAGTCACCACTGACGAAACCGATGATATGAAGGCTCATATGCCATCAATTGATCGAAGTTGGATGTATGCGAAAAATTTGAAACGCCGTTCTACGGAGTACAGAAAGGGCGTAATAAATTTTATGAACGCCGCGGAGGAGGATCGGATAAGAAGAAACAGTGATTACATGTGTTGTCCATGTGCAGATTGCAAGAATGAGAATATGTTTGATAGCGGAGAGGACGTACACGGTCATCTGATATAACGAGGATTCATGGAGGGCTATACATGTTGGGTGAAGCATGGAGAGCAAGAATCAGGAAGTGGAGCAGCAGCAGACAGAAGTGGTGCGCATAATCAGGAAGATGAAGATGAGCATGACATGTTTATACCTTCTCCATTGGGCGGTGAAATAGTTGATGTGGATCACGATCTGCTGCAAGACATGTTACGTGACATTCAGGACCCAGCCCAGAATGAGAGAGATGGAATGAAGTTCAGCAGGTTGGTAAGTGATTACAAGACGCCTTTGTACGCTGGATGCAAAGCAAAACACACTAAGTTGTCAGTTACCTAGGGCCTAATGAAGCTGAAGGCAAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5639#0 TTCTCTCCCCGCCAGCTCATGCCTCGCCTCCGTGCGCCGCGCTCCTCGCCCTCGCTCTCG 60 consensus_5639#1 ------------------------------------------------------------ consensus_5639#0 CTCGTGCAGTGACATGTCACGCGCCGCCGCCTTCACCTCCTCCAACGGTCCATTGACGAT 120 consensus_5639#1 ------------------------------------------------------------ consensus_5639#0 GAAGACGGAAAGAGAGAGGGCGAGAGCTAGAGGGGATGGGGAGAGGAAGGCACGCAGCGA 180 consensus_5639#1 ------------------------------------------------------------ consensus_5639#0 GTTCCCCTCCTTCCTTCGTAGCAATTGGTGCTTCCACCAGCAAGCTTTCTATAACGTGGA 240 consensus_5639#1 ------------------------------------------------------------ consensus_5639#0 GTGTCGCCGACCACGGCCGCAGCCTCCTTCCTCTGGATTGGACTCCACTGGGAACTCCTC 300 consensus_5639#1 ------------------------------------------------------------ consensus_5639#0 CGACATATCAAGTGTGCCTGTCCACCTTCTACCTCTGAGGCAAAGATTGGATCAAGCAAG 360 consensus_5639#1 ------------------------------------------------------------ consensus_5639#0 CTGGATCTGACTCAGCACCTTGATCTGCTCAACAACCGGAGCCCCCACCTCCTTATACAT 420 consensus_5639#1 ------------------------------------------------------GCATGT 6 * * consensus_5639#0 CCCAAAGATGGATATGCATCTTCTGTAT--TCAGTTAGGATAAGGCTTCCAAGGTCTGCA 478 consensus_5639#1 ACCAGAGCCGACGGATGGTTTGTTGGATCATTGATCAGTA-GAGGAATGCATATCCTGTG 65 *** ** * * * ** ** * * ** * *** * ** *** consensus_5639#0 TAAAGCAACCGTGAGACTCACATGCTACAAAATTTTGGTTTCACATGATGTTTATGACTG 538 consensus_5639#1 TTA--CAAACATACAAATGTAGACTTGTTGGATCCAGCCTTTCTTATTTGCTTATGATTT 123 * * *** * * * * * ** * ** ** ****** * consensus_5639#0 AAAGTAATGCAGTATCAGGCATGCAAAAATAGAAGTTTAGTTGATCTACTGGTGCTTCAT 598 consensus_5639#1 ----TACCTCAATAT----CCTACAATGCTGG--GTTTTTTTGGCTAGCCA--------- 164 ** ** *** * * *** * * **** *** * consensus_5639#0 CTGCAAACACCATGGATCAGTTCATGACAGCATGACCATAAGGTTGGGAGGGACAAGAAC 658 consensus_5639#1 CTGAAGACCTCAAGGCT--------AATAACAT--TCAGAACCTTGCTAAATGTCAGAG- 213 *** * ** ** ** * * * *** ** ** *** * *** consensus_5639#0 AAGGTGTCCATTAAAGTTATGGAGATAATGCTGTTCAGGCCGGTCCAGTGAAAAGAGATT 718 consensus_5639#1 AAGGCCTCTTAGAAGGTT--CGAGTCACCACTGACGAAACCGAT----------GATAT- 260 **** ** ** *** *** * *** * *** * ** ** consensus_5639#0 AAAGAGGATTAAATTGTTTGCAGCGATGGATCGAAGTTGGATGTATAGAAGAACTGTGCG 778 consensus_5639#1 ---GAAGGCTCATATGC---CATCAATTGATCGAAGTTGGATGTATGCGAAAAATTTGAA 314 ** * * * ** ** * ** ****************** * ** * ** consensus_5639#0 ACGTCATAGCAAATAGTATAGAAATTGAGTATTAAATTTTATAAACACCGCGGAGGAGGA 838 consensus_5639#1 ACGCCGTTCTACGGAGTACAGAAAGGGCGTAATAAATTTTATGAACGCCGCGGAGGAGGA 374 *** * * * **** ***** * *** ********** *** ************* consensus_5639#0 TAGGAAAAGAAGAAACAA-GATTACATATGTTGTCAATGTGCATATTGCAAAAATGAGA- 896 consensus_5639#1 TCGGATAAGAAGAAACAGTGATTACATGTGTTGTCCATGTGCAGATTGCAAGAATGAGAA 434 * *** *********** ******** ******* ******* ******* ******* consensus_5639#0 TATGTTTGATAGCAGAGTGGACGTACATGCTCATCTGATACAACGAGGATTCATGGAGGG 956 consensus_5639#1 TATGTTTGATAGCGGAGAGGACGTACACGGTCATCTGATATAACGAGGATTCATGGAGGG 494 ************* *** ********* * ********** ******************* consensus_5639#0 CTACACATGTTGGGTGAAGCATGGAGAGCAAGAATCACTTGACGATGTTGCAGCTGCAGA 1016 consensus_5639#1 CTATACATGTTGGGTGAAGCATGGAGAGCAAGAATCA---GGAAGTGGAGCAGCAGCAGA 551 *** ********************************* * ** ***** ***** consensus_5639#0 CAGAAGTGGAGCACAAAATTAGGAAAATGAAGATGAGCATAATATGTTTGTACCTTCTCC 1076 consensus_5639#1 CAGAAGTGGTGCGCATAATCAGGAAGATGAAGATGAGCATGACATGTTTATACCTTCTCC 611 ********* ** ** *** ***** ************** * ****** ********** consensus_5639#0 ATTAGGCGGTGAAATGGTTGATGTGGATCACGATCTGATGCAAGACATATTACATGACGT 1136 consensus_5639#1 ATTGGGCGGTGAAATAGTTGATGTGGATCACGATCTGCTGCAAGACATGTTACGTGACAT 671 *** *********** ********************* ********** **** **** * consensus_5639#0 TGAGGACACAGCTTACAACGAGAGAGATTCCATAAAATTCAGCAGGTTGGTCGGTGACTC 1196 consensus_5639#1 TCAGGACCCAGCCCAGAATGAGAGAGATGGAATGAAGTTCAGCAGGTTGGTAAGTGATTA 731 * ***** **** * ** ********* ** ** ************** **** * consensus_5639#0 GGAGACGCCTCTATACGCCGGATGCAAGGCAAAACACACCAAATTGTCAGATACCTTGAA 1256 consensus_5639#1 CAAGACGCCTTTGTACGCTGGATGCAAAGCAAAACACACTAAGTTGTCAGTTACCTTGGA 791 ******** * ***** ******** *********** ** ******* ******* * consensus_5639#0 CCTAACGAAGCTGAAGGCAAGTAGTGGATGGACATAAAAGAGTTTCATAGATCTTTGGGG 1316 consensus_5639#1 CCGAATGAAGCTGAAGGCAAGTAGTGGATGGACAAAAAAAAAGG---------------- 835 ** ** **************************** **** * consensus_5639#0 AATACTGAAAGCAATGCTATTTGATATATTGTTTACATATCTTGCTAGTTACATGATCAA 1376 consensus_5639#1 ------------------------------------------------------------ consensus_5639#0 ACTGATTGGCACACATGCATCTCATCAATTTTTGGACCTGCACTGGAGCTAAGCAGATCT 1436 consensus_5639#1 ------------------------------------------------------------ consensus_5639#0 CCTAGGTCATTGCTGTTGTCGACTTAGTTCGCACCAACAAAGTTCTGGCACCATAGGCCA 1496 consensus_5639#1 ------------------------------------------------------------ consensus_5639#0 AGCGCATATTTTTCATCAACACCGTGCACTTGCGGACTTATTTGTAGCCATCACAAATAA 1556 consensus_5639#1 ------------------------------------------------------------ consensus_5639#0 CAACAGGGAGAGGGGGCGGTGATGATAAGTTACCCGAGGGTGACCCGGCAGGGCCCTGGG 1616 consensus_5639#1 ------------------------------------------------------------ consensus_5639#0 GTGTGAGTTGTCTTTCTAAAATAAGAGTGTCTAATTCTATATATATCTATATATCCTATC 1676 consensus_5639#1 ------------------------------------------------------------ consensus_5639#0 AATAGCATTGGATCCTCTCATGCTCAATAAATTCATGTCTTATGTACAATTGCAATTCCA 1736 consensus_5639#1 ------------------------------------------------------------ consensus_5639#0 AATCAAATACTATGAAGCTTAAAATGTTGT 1766 consensus_5639#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||