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Oryza sativa
cluster # 5650 cluster # 5650       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5650#0 length = 2308 sequences # 3  

consensusID : consensus_5650#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2308
fasta sequence
                              [CTCGTCGGCTCCTCTGACAAACCCCAGCAGGAGTACGGCACCGCCCTCCCGCCCGTCCGTCGCCGGCGAAACTAGGTCGTAACTTCCCAGCCGAGCAGCCCATCTCGGGTAGGAGGAGCTCAGCGCCGTCGACGCTCCCCGGCGGGCTTCAATTTCGGTCGCCGGCGACAAGTACTACAGTTAAGCTCCTTGATATTCTGATAACAAACAAGGCAGCTGCAAAGGCTATATTCATCAAAATGGACCCAGATCAAGTGGAGATTCCCTTTAAAGTGCTTCAGGAGAGAGTCCCTGGTAAAAAGAAGTATTCCTTAAGGGTTATCAAACCTTCGTCCTCAAAGAAGATATGCAGAAGCGTTAACAGTTATCCCCTTGTCTGTCTGAAGAGGGAGATGGCAGATAATGATCATGTGCATTGCATAATGCTTACGCTAAATCACCGAAACATTCTCTCAATGAAAGCCCTATCCAGGGACAAGGTTGAGAGCAATGGCCCCTCATCCTTAGCAGCATTTGTAGAGCCTTACACTGGACTGTTATCATCACTTTGTTTTAAACATGATTGCTGGGGTGACAGAATAAACCACATTCCTTCACCATTACTCCAGTCCTTATTAAGGCAAGTCATTGAGGGGCTTGACTTCTTGAGGAAGAACAAACTGTATCATGGTAATCTCAATTGGGATTCGATTTTGTATCTTCAACCGTCTACCGTTAAGCTTGCTAACTTCAGAAAACAAGAGACAATGAGCTTGGAGGAAGCCCAGTGGGCCGATTGGTTGTGCCTTATTAAAATGCTTGAAGAAATTTTAGAAAGAGCTGCTGAAATAAGCTCAAAGCTTGCTCAATGTGATAGATATTTCTGCGGACATGTTGAATCTTTGACTGCTCTATTGAAAACCCTGGATAAGACTGCATTGCCGGCAATTAAAGAAATTGTTCTTGGGCATCCTCTTTTTTGGGATTTGATGACGAGGGTAAACTTCTTTGCAAAGGATATATCACTTAGGTTGAATGATGACACTTTTATGTCAAGAGTGAGAGCTTCAAAAATCCGTAAGCTTCCTTGGAATGAAGGAACAACTCAAGACTTTAAAGGTCTCCTGTTTGAAATGGAAACCTATCGTAAAGATGAAGGAATTCCAGCATATGACTTCAGAAGCTTAAAAGATTATGTACGCTGTGTCTGTGGTGCTTATGCTCACTGGAATAAAATAAAGCTAAATGTTGACGACATTGTTCGGCAAAACCATCCTACCATATGCAGTGATATCTGGCATCTTCTTGGAAGTTCAGACATGTCGCATGCTGATTCTAAGAAGCCAGTTGAAGAGATTAAATTAATATCTGATGTCGTTAGAGATTCACCACACAAGATTTTCATCGCTGGAATTCCTAGAGTGATTTCATCTAAGATGCTCAGGGATATAGTTAGTTCATTTGGTCAATTGGCTGCTTACCGCTTTCTTTTTAATGAAGACCTTGGTGGAGCATGCGCATTTCTTGAGTACATTGATCACTCCATTACATCAAAGGCATGTGCTGGCCTTAACGGCATGAAGCTTGGTGGATGCGTAATAACTGCTGTTGGCGTGTTAACTGATCATCCTGGGCAGGCTGGCAATGAAGCTTGCCC-ATTTCATGGAATTCCTGCCAATCCCAAACCTCTTCTTGCAGTACCAACACAAGTCCTGCAGCTAAAAAATGTGTTTGACCAGGAGGAATACTCGCTGCTTTCAAAATATGAGGTAGATGCAGTATTGGAAGATGTACGTGTGAAGTGTGCAAGGTATGGAGCTGTGAAATCCATAAATGTCGTAGAGTATCCTGCTGGCAGTGACAACACCAAGGCACCTGCAGTAGATGCTAGAGACAACGCTTTGGCTTCTAACAACACTGCACTCGAAGCTGGCTGTATACTTGTAGAGTTCTTGTGCAAGGAGGCTTCATTCATGGCTGCTCATTCACTCCATGGCCGGCCTTTTGGCAGCAGGATTGTCTCTGCGGGATATGCTCCATATGATCTCTTATCTCTACCGGAGGTATTTCCAGTGTTGAGATTCTGATGTACTCCACTTTTTTCAAGGGAAAAATTCTGATGTACTGATGGAGCTAAAGCTTGCGTATTCCCCAACACGAAGTACCTTGTAGCTTTGGTCTGTTGGATGCATAAGCGTGAAACTAGTTTTCAATCAGAATTGATACAAGGGAACAAGGGAACAAGTACTTGTTCCTTGGGATGAAATATTGGATACACGTGATCAGTAACCATTTTATCTGAAGTCACAGAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK102888             [CTCGTCGGCTCCTCTGACAAACCCCAGCAGGAGTACGGCACCGCCCTCCCGCCCGTCCGTCGCCGGCGAAACTAGGTCGTAACTTCCCAGCCGAGCAGCCCATCTCGGGTAGGAGGAGCTCAGCGCCGTCGACGCTCCCCGGCGGGCTTCAATTTCGGTCGCCGGCGACAAGTACTACAGTTAAGCTCCTTGATATTCTGATAACAAACAAGGCAGCTGCAAAGGCTATATTCATCAAAATGGACCCAGATCAAGTGGAGATTCCCTTTAAAGTGCTTCAGGAGAGAGTCCCTGGTAAAAAGAAGTATTCCTTAAGGGTTATCAAACCTTCGTCCTCAAAGAAGATATGCAGAAGCGTTAACAGTTATCCCCTTGTCTGTCTGAAGAGGGAGATGGCAGATAATGATCATGTGCATTGCATAATGCTTACGCTAAATCACCGAAACATTCTCTCAATGAAAGCCCTATCCAGGGACAAGGTTGAGAGCAATGGCCCCTCATCCTTAGCAGCATTTGTAGAGCCTTACACTGGACTGTTATCATCACTTTGTTTTAAACATGATTGCTGGGGTGACAGAATAAACCACATTCCTTCACCATTACTCCAGTCCTTATTAAGGCAAGTCATTGAGGGGCTTGACTTCTTGAGGAAGAACAAACTGTATCATGGTAATCTCAATTGGGATTCGATTTTGTATCTTCAACCGTCTACCGTTAAGCTTGCTAACTTCAGAAAACAAGAGACAATGAGCTTGGAGGAAGCCCAGTGGGCCGATTGGTTGTGCCTTATTAAAATGCTTGAAGAAATTTTAGAAAGAGCTGCTGAAATAAGCTCAAAGCTTGCTCAATGTGATAGATATTTCTGCGGACATGTTGAATCTTTGACTGCTCTATTGAAAACCCTGGATAAGACTGCATTGCCGGCAATTAAAGAAATTGTTCTTGGGCATCCTCTTTTTTGGGATTTGATGACGAGGGTAAACTTCTTTGCAAAGGATATATCACTTAGGTTGAATGATGACACTTTTATGTCAAGAGTGAGAGCTTCAAAAATCCGTAAGCTTCCTTGGAATGAAGGAACAACTCAAGACTTTAAAGGTCTCCTGTTTGAAATGGAAACCTATCGTAAAGATGAAGGAATTCCAGCATATGACTTCAGAAGCTTAAAAGATTATGTACGCTGTGTCTGTGGTGCTTATGCTCACTGGAATAAAATAAAGCTAAATGTTGACGACATTGTTCGGCAAAACCATCCTACCATATGCAGTGATATCTGGCATCTTCTTGGAAGTTCAGACATGTCGCATGCTGATTCTAAGAAGCCAGTTGAAGAGATTAAATTAATATCTGATGTCGTTAGAGATTCACCACACAAGATTTTCATCGCTGGAATTCCTAGAGTGATTTCATCTAAGATGCTCAGGGATATAGTTAGTTCATTTGGTCAATTGGCTGCTTACCGCTTTCTTTTTAATGAAGACCTTGGTGGAGCATGCGCATTTCTTGAGTACATTGATCACTCCATTACATCAAAGGCATGTGCTGGCCTTAACGGCATGAAGCTTGGTGGATGCGTAATAACTGCTGTTGGCGTGTTAACTGATCATCCTGGGCAGGCTGGCAATGAAGCTTGCCC ATTTCATGGAATTCCTGCCAATCCCAAACCTCTTCTTGCAGTACCAACACAAGTCCTGCAGCTAAAAAATGTGTTTGACCAGGAGGAATACTCGCTGCTTTCAAAATATGAGGTAGATGCAGTATTGGAAGATGTACGTGTGAAGTGTGCAAGGTATGGAGCTGTGAAATCCATAAATGTCGTAGAGTATCCTGCTGGCAGTGACAACACCAAGGCACCTGCAGTAGATGCTAGAGACAACGCTTTGGCTTCTAACAACACTGCACTCGAAGCTGGCTGTATACTTGTAGAGTTCTTGTGCAAGGAGGCTTCATTCATGGCTGCTCATTCACTCCATGGCCGGCCTTTTGGCAGCAGGATTGTCTCTGCGGGATATGCTCCATATGATCTCTTATCTCTACCGGAGGTATTTCCAGTGTTGAGATTCTGATGTACTCCACTTTTTTCAAGGGAAAAATTCTGATGTACTGATGGAGCTAAAGCTTGCGTATTCCCCAACACGAAGTACCTTGTAGCTTTGGTCTGTTGGATGCATAAGCGTGAAACTAGTTTTCAATCAGAATTGATACAAGGGAACAAGGGAACAAGTACTTGTTCCTTGGGATGAAATATTGGATACACGTGATCAGTAACCATTTTATCTGAAGTCACAG                   ]
[+] EMBL C26598               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CTTGAAGAAATTTTAGAAAGAGCTGCTGAAATAAGCTCAAAGCTTGCTCAATGTGATAGATATTTCTGCGGACATGTTGAATCTTTGACTGCTCTATTGAAAACCCTGGATAAGACTGCATTGCCGGCAATTAAAGAAATTGTTCTTGGGCATCCTCTTTTTTGGGATTTGATGACGAGGGTAAACTTCTTTGCAAAGGATATATCACTTAGGTTGAATGATGACACTTTTATGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU092360             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGGCAGGNTGGCAATGAAGCTTGCCCNATTTCATGGAATTCCTGCCAATCCCAAACCTCTTCTTGCAGTACCAACACAAGTCCTGCAGCTAAAAAATGTGTTTGACCAGGAGGAATACTCGCTGCTTTCAAAATNTGAGGTAGATGCAGTATTGGAAGATGTACGTGTGAAGTGTGCAAGGTNTGGAGCTGTGAAATCCATAAATGTCGTAGAGTATCCTGCTGGCAGTGACAACACCAAGGCNCCTGCAGTAGATGCTAGAGACAACGCTTTGGCTTCTAACAACACTGCACTCGAAGCTGGCTGTATACTTGTAGAGTTCTTGTGCAAGGAGGCTTCATTCATGGCTGCTCATTCACTCCATGGCCGGCCTTTTGGCAGCAGGATTGTCTCTGCGGGATATGCTCCATATGATCTCTTATCTCTNCCGGAGGTATTTCCAGTGTTGAGATTCTGATGTACTCCACTTTTTTCAAGGGAAAAATTCTGATGTACTGATGGAGCTAAAGCTTGCGTATTCCCCAACACGAAGTACCTTGTAGCTTTGGTCTGTTGGATGCATAAGCGTGAAACTAGTTTTCAATCAGAATTGATACAAGGGAACAAGGGAACAAGTACTTGTTCCTTGGGATGAAATATTGGATACACGTGATCAGTAACCATTTTATCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_5650#0 CTCGTCGGCTCCTCTGACAAACCCCAGCAGGAGTACGGCACCGCCCTCCCGCCCGTCCGT CGCCGGCGAAACTAGGTCGTAACTTCCCAGCCGAGCAGCCCATCTCGGGTAGGAGGAGCT CAGCGCCGTCGACGCTCCCCGGCGGGCTTCAATTTCGGTCGCCGGCGACAAGTACTACAG TTAAGCTCCTTGATATTCTGATAACAAACAAGGCAGCTGCAAAGGCTATATTCATCAAAA TGGACCCAGATCAAGTGGAGATTCCCTTTAAAGTGCTTCAGGAGAGAGTCCCTGGTAAAA AGAAGTATTCCTTAAGGGTTATCAAACCTTCGTCCTCAAAGAAGATATGCAGAAGCGTTA ACAGTTATCCCCTTGTCTGTCTGAAGAGGGAGATGGCAGATAATGATCATGTGCATTGCA TAATGCTTACGCTAAATCACCGAAACATTCTCTCAATGAAAGCCCTATCCAGGGACAAGG TTGAGAGCAATGGCCCCTCATCCTTAGCAGCATTTGTAGAGCCTTACACTGGACTGTTAT CATCACTTTGTTTTAAACATGATTGCTGGGGTGACAGAATAAACCACATTCCTTCACCAT TACTCCAGTCCTTATTAAGGCAAGTCATTGAGGGGCTTGACTTCTTGAGGAAGAACAAAC TGTATCATGGTAATCTCAATTGGGATTCGATTTTGTATCTTCAACCGTCTACCGTTAAGC TTGCTAACTTCAGAAAACAAGAGACAATGAGCTTGGAGGAAGCCCAGTGGGCCGATTGGT TGTGCCTTATTAAAATGCTTGAAGAAATTTTAGAAAGAGCTGCTGAAATAAGCTCAAAGC TTGCTCAATGTGATAGATATTTCTGCGGACATGTTGAATCTTTGACTGCTCTATTGAAAA CCCTGGATAAGACTGCATTGCCGGCAATTAAAGAAATTGTTCTTGGGCATCCTCTTTTTT GGGATTTGATGACGAGGGTAAACTTCTTTGCAAAGGATATATCACTTAGGTTGAATGATG ACACTTTTATGTCAAGAGTGAGAGCTTCAAAAATCCGTAAGCTTCCTTGGAATGAAGGAA CAACTCAAGACTTTAAAGGTCTCCTGTTTGAAATGGAAACCTATCGTAAAGATGAAGGAA TTCCAGCATATGACTTCAGAAGCTTAAAAGATTATGTACGCTGTGTCTGTGGTGCTTATG CTCACTGGAATAAAATAAAGCTAAATGTTGACGACATTGTTCGGCAAAACCATCCTACCA TATGCAGTGATATCTGGCATCTTCTTGGAAGTTCAGACATGTCGCATGCTGATTCTAAGA AGCCAGTTGAAGAGATTAAATTAATATCTGATGTCGTTAGAGATTCACCACACAAGATTT TCATCGCTGGAATTCCTAGAGTGATTTCATCTAAGATGCTCAGGGATATAGTTAGTTCAT TTGGTCAATTGGCTGCTTACCGCTTTCTTTTTAATGAAGACCTTGGTGGAGCATGCGCAT TTCTTGAGTACATTGATCACTCCATTACATCAAAGGCATGTGCTGGCCTTAACGGCATGA AGCTTGGTGGATGCGTAATAACTGCTGTTGGCGTGTTAACTGATCATCCTGGGCAGGCTG GCAATGAAGCTTGCCCATTTCATGGAATTCCTGCCAATCCCAAACCTCTTCTTGCAGTAC CAACACAAGTCCTGCAGCTAAAAAATGTGTTTGACCAGGAGGAATACTCGCTGCTTTCAA AATATGAGGTAGATGCAGTATTGGAAGATGTACGTGTGAAGTGTGCAAGGTATGGAGCTG TGAAATCCATAAATGTCGTAGAGTATCCTGCTGGCAGTGACAACACCAAGGCACCTGCAG TAGATGCTAGAGACAACGCTTTGGCTTCTAACAACACTGCACTCGAAGCTGGCTGTATAC TTGTAGAGTTCTTGTGCAAGGAGGCTTCATTCATGGCTGCTCATTCACTCCATGGCCGGC CTTTTGGCAGCAGGATTGTCTCTGCGGGATATGCTCCATATGATCTCTTATCTCTACCGG AGGTATTTCCAGTGTTGAGATTCTGATGTACTCCACTTTTTTCAAGGGAAAAATTCTGAT GTACTGATGGAGCTAAAGCTTGCGTATTCCCCAACACGAAGTACCTTGTAGCTTTGGTCT GTTGGATGCATAAGCGTGAAACTAGTTTTCAATCAGAATTGATACAAGGGAACAAGGGAA CAAGTACTTGTTCCTTGGGATGAAATATTGGATACACGTGATCAGTAACCATTTTATCTG AAGTCACAGAAAAAAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)