These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5656#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 535 fasta sequence [CCTTTTTCTCCTCTTCTTCCTCCGCCTCGGCCGGCGACTCCTCGCCGCCGACGTAACCGCGTCCTCTCTCTCTCTCTCTCTCTCTCTNTNTCTCTCTCTCTCTCTCTCTCTCTCTCCTCCGAGCCCAGAAACTTCTGGAAGCTTCTAGTAGCCCAACCCAGCGCGGCGCGGCGCACGATGTGCGGGATCTTCGCGTACCTCAACTACAATGTGTCGCGGGAG-GCCGGTACATNCTCGAGGTCCTCTTCAATGGCCTCCGNCGCCTCGAGTACCGCGGCTACGACTCCTCCGGTATCGCCGTCGANGGCGACGTTTCCCCCTGCGCTTCTTCTTCTTCTTCTACGGCGGTGCCGGCCTATGCCGGGGCGTCCCCGCTGGTGTTCCGCCAGGAGGGCAAGATCGAGAACCTCGTACGATCCGTCTACTCCGAGGTTGATGAGAAGGATGTGAACCTGGACGCCGCCTTCAATGTGCATGCTGGAATTGCCCACACCAGGTGGGCCACGCATGGTGTGCCTGCCCCAAGGAACAGCCA] [+] EMBL AU070511 [CCTTTTTCTCCTCTTCTTCCTCCGCCTCGGCCGGCGACTCCTCGCCGCCGACGTAACCGCGTCCTCTCTCTCTCTCTCTCTCTCTCTNTNTCTCTCTCTCTCTCTCTCTCTCTCTCCTCCGAGCCCAGAAACTTCTGGAAGCTTCTAGTAGCCCAACCCAGCGCGGCGCGGCGCACGATGTGCGGGATCTTCGCGTACCTCAACTACAATGTGTCGCGGGAG GCCGGTACATNCTCGAGGTCCTCTTCAATGGCCTCCGNCGCCTCGAGTACCGCGGCTACGACTCCTCCGGTATCGCCGTCGANGGCGACGTTTCCC ] [+] EMBL AU225346 [ gccgctgGAAACTTCTGGAAGCTTCTAGAAGCCCAGCCCAGCGCGGCGCGGCGCACGATGTGCGGGATCTTCGCGTACCTCAACTACAATGTGTCGCGGGAGCGCCGCTACATCCTCGAGGTCCTCTTCAATGGCCTCCGCCGCCTCGAGTACCGCGGCTACGACTCCTCCGGCATCGCCGTCGACGCCGACGTTCCCTCCTGCGCTTCTTCTTCTTCTTCTACGGCGGTGCCGGCCTATGCCGGGGCGTCCCCGCTGGTGTTCCGCCAGGAGGGCAAGATCGAGAACCTCGTACGATCCGTCTACTCCGAGGTTGATGAGAAGGATGTGAACCTGGACGCCGCCTTCAATGTGCATGCTGGAATTGCCCACACCAGGTGGGCCACGCATGGTGTGCCTGCCCCAAGGAACAGCCA] consensusID : consensus_5656#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [AAATAAGAACAAAACGCGGCCTTTTTCTCCTCTTCTTCCTCCGCCTCGGCCGGCGACTCCTCGCCGCCGACGTAACCGCGTCCTCTCTCTCTCTCTCTCTCTCTCCTCCGAGCCCAGAAACTTCTGGAAGCTTTTTGTATCCCAACCCAGCGCGGCGCGGCGCACGATGTGCGGTTATTTTTCGTACCTCAACTACAATGTGTCGCGGGAGCGCCGGTACATCCTCGAGGTCCTCTTCAATGGCCTCCGCCGCCTCGAGTACCGCGGCTACGACTCCTCCGGTATCGCCGTCGACGCCGACGTTCCCTCCTGCGCTTCTACTTCTGCGGTGCCGCCGTACGCCGGGGCGCCCCCGCTGGTGTTCCGCCAGGAGGGCAAGATCGAGAACCTCGTGCGATCCGTCTACTCCGAGGTTGATGAGAAGGATGTGAACCTGGACGCCGCCTTCAATGTGCATGCTGGAATTGCCCACACCAGGTGGGCCACGCACGGTG] [+] EMBL CF305997 [AAATAAGAACAAAACGCGGCCTTTTTCTCCTCTTCTTCCTCCGCCTCGGCCGGCGACTCCTCGCCGCCGACGTAACCGCGTCCTCTCTCTCTCTCTCTCTCTCTCCTCCGAGCCCAGAAACTTCTGGAAGCTTTTTGTATCCCAACCCAGCGCGGCGCGGCGCACGATGTGCGGTTATTTTTCGTACCTCAACTACAATGTGTCGCGGGAGCGCCGGTACATCCTCGAGGTCCTCTTCAATGGCCTCCGCCGCCTCGAGTACCGCGGCTACGACTCCTCCGGTATCGCCGTCGACGCCGACGTTCCCTCCTGCGCTTCTACTTCTGCGGTGCCGCCGTACGCCGGGGCGCCCCCGCTGGTGTTCCGCCAGGAGGGCAAGATCGAGAACCTCGTGCGATCCGTCTACTCCGAGGTTGATGAGAAGGATGTGAACCTGGACGCCGCCTTCAATGTGCATGCTGGAATTGCCCACACCAGGTGGGCCACGCACGGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5656#0 -------------------CCTTTTTCTCCTCTTCTTCCTCCGCCTCGGCCGGCGACTCC 41 consensus_5656#1 AAATAAGAACAAAACGCGGCCTTTTTCTCCTCTTCTTCCTCCGCCTCGGCCGGCGACTCC 60 ***************************************** consensus_5656#0 TCGCCGCCGACGTAACCGCGTCCTCTCTCTCTCTCTCTCTCTCTCTNTNTCTCTCTCTCT 101 consensus_5656#1 TCGCCGCCGACGTAACCGCGTCCTCTCT------------------------------CT 90 **************************** ** consensus_5656#0 CTCTCTCTCTCTCTCCTCCGAGCCCAGAAACTTCTGGAAGCTTCTAGTAGCCCAACCCAG 161 consensus_5656#1 CTCTCTCTCTCTCTCCTCCGAGCCCAGAAACTTCTGGAAGCTTTTTGTATCCCAACCCAG 150 ******************************************* * *** ********** consensus_5656#0 CGCGGCGCGGCGCACGATGTGCGGGATCTTCGCGTACCTCAACTACAATGTGTCGCGGGA 221 consensus_5656#1 CGCGGCGCGGCGCACGATGTGCGGTTATTTTTCGTACCTCAACTACAATGTGTCGCGGGA 210 ************************ ** **************************** consensus_5656#0 G-GCCGGTACATNCTCGAGGTCCTCTTCAATGGCCTCCGNCGCCTCGAGTACCGCGGCTA 280 consensus_5656#1 GCGCCGGTACATCCTCGAGGTCCTCTTCAATGGCCTCCGCCGCCTCGAGTACCGCGGCTA 270 * ********** ************************** ******************** consensus_5656#0 CGACTCCTCCGGTATCGCCGTCGANGGCGACGTTTCCCCCTGCGCTTCTTCTTCTTCTTC 340 consensus_5656#1 CGACTCCTCCGGTATCGCCGTCGACGCCGACGTTCCCTCCTGCGCTTCTACTTCT----- 325 ************************ * ******* ** *********** ***** consensus_5656#0 TACGGCGGTGCCGGCCTATGCCGGGGCGTCCCCGCTGGTGTTCCGCCAGGAGGGCAAGAT 400 consensus_5656#1 ----GCGGTGCCGCCGTACGCCGGGGCGCCCCCGCTGGTGTTCCGCCAGGAGGGCAAGAT 381 ********* * ** ********* ******************************* consensus_5656#0 CGAGAACCTCGTACGATCCGTCTACTCCGAGGTTGATGAGAAGGATGTGAACCTGGACGC 460 consensus_5656#1 CGAGAACCTCGTGCGATCCGTCTACTCCGAGGTTGATGAGAAGGATGTGAACCTGGACGC 441 ************ *********************************************** consensus_5656#0 CGCCTTCAATGTGCATGCTGGAATTGCCCACACCAGGTGGGCCACGCATGGTGTGCCTGC 520 consensus_5656#1 CGCCTTCAATGTGCATGCTGGAATTGCCCACACCAGGTGGGCCACGCACGGTG------- 494 ************************************************ **** consensus_5656#0 CCCAAGGAACAGCCA 535 consensus_5656#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||