These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5662#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1349 fasta sequence [TCTCGGCCCATCAGGCCCAGCACCCAAACCGCTGTGCTCCCTTCGTGGCGGCGACGCCGACGAGGCGTACGCGTCTTCTCCGCCGCCGCCGCCGCCGCCGCCGTCCGTCCGTCCGTCCGGTCGGCCAGCCGGCAACGGCCACCCGTGAGCGACATCCGCGACCGGCCAGAACCGCTTCCTTTGGTAGTCCGTGCCCGACGCCAACAAGCGGAGGAGATATCCCACAATGGGCATCAGTAAGACTGAAGTGAATCTGCTGCGGTTGCTTGACTCGGCTCCGCGGCAGCAGAACCAGGCTAAACTCATTCATTATGTCACCACATCGAGGGAACTGTTGGAGAAGCTGGCAGCGGAAAATACGTCAGAAGGGATATCAAGTATTGCAAAAGGAAGGCTAAATGAGTATTCAGAGAGGATTGAGGAACTTGCCGCAAGGCTTGCTTCTCTAGTGCCTGGTTACGAAAATGCTGTTGAAGCCATCAGAAAAGAAGAAAGTTACCTTGAAGGGGAACAAATTAGAAGTCCAATAGCCTTATCCCCTGGATTGAGGAGGCGATTGACAGCTCTGCAAGAGATTGAACAACCTACCAATGCAAAAGAAAGAAATGTTGCAGAACCTCTTAGATTAGATGAAGCAGCCCAGGCAAACATAGAGAAATATAGGAATCTGCAAGAAGATTTGACTGATGAGATTGTTGAATTAGCACGCCAGCTGAAGGATAGCAGTCTTATGATGAACCAGTCTGTGCAAGCAACAGAGAAGATACTTGATTCAACTGAAAGGGCTGTGGCATATAGCTTGGCAGGCACTGACCGTGCAAATGCACAAGCTGTGGAGGTGTCTTCGTTAACCTCCAAAACAACTTGTTTCCAGTGGTTTCTGCTTTTTGTAATGACCTGTATGTTCATCATGGTTGTTCTACTTATACGGGTAACCTAAGGCGTGGCATTCACTGAAACAAATGTGACCAGTTACAGTACATTACTGCTCGAAGATAGACCTCCATTACAAAATGCTGTACTGACTAGTATAAGTGATAGATGCTGCGACTTTCTTTAGTCAGCTAGCTAGAAGCTGTTAATAAATGAATATAGCAGGCTTTTGGCCATGTATAACCATGCTGACCGAGTTTGAATTCATTACCTAAAAAAAAATGGATATAGCAGGCAACCGCTGATATGATTTTTTTTCCCTCATTTTTTTGATGTGCAATGAGTTGTTCGGTGCTCATATTTTTGTAAGCCGCTGATATAGCAGGCAGACGCTGATATACTTCTTAACTTCCATTTGATGTATGATCAATGTATATATACTAAATTGCAAGCATATGTGTTGCCTTCAAACGAAA] [+] EMBL AK071858 [TCTCGGCCCATCAGGCCCAGCACCCAAACCGCTGTGCTCCCTTCGTGGCGGCGACGCCGACGAGGCGTACGCGTCTTCTCCGCCGCCGCCGCCGCCGCCGCCGTCCGTCCGTCCGTCCGGTCGGCCAGCCGGCAACGGCCACCCGTGAGCGACATCCGCGACCGGCCAGAACCGCTTCCTTTGGTAGTCCGTGCCCGACGCCAACAAGCGGAGGAGATATCCCACAATGGGCATCAGTAAGACTGAAGTGAATCTGCTGCGGTTGCTTGACTCGGCTCCGCGGCAGCAGAACCAGGCTAAACTCATTCATTATGTCACCACATCGAGGGAACTGTTGGAGAAGCTGGCAGCGGAAAATACGTCAGAAGGGATATCAAGTATTGCAAAAGGAAGGCTAAATGAGTATTCAGAGAGGATTGAGGAACTTGCCGCAAGGCTTGCTTCTCTAGTGCCTGGTTACGAAAATGCTGTTGAAGCCATCAGAAAAGAAGAAAGTTACCTTGAAGGGGAACAAATTAGAAGTCCAATAGCCTTATCCCCTGGATTGAGGAGGCGATTGACAGCTCTGCAAGAGATTGAACAACCTACCAATGCAAAAGAAAGAAATGTTGCAGAACCTCTTAGATTAGATGAAGCAGCCCAGGCAAACATAGAGAAATATAGGAATCTGCAAGAAGATTTGACTGATGAGATTGTTGAATTAGCACGCCAGCTGAAGGATAGCAGTCTTATGATGAACCAGTCTGTGCAAGCAACAGAGAAGATACTTGATTCAACTGAAAGGGCTGTGGCATATAGCTTGGCAGGCACTGACCGTGCAAATGCACAAGCTGTGGAGGTGTCTTCGTTAACCTCCAAAACAACTTGTTTCCAGTGGTTTCTGCTTTTTGTAATGACCTGTATGTTCATCATGGTTGTTCTACTTATACGGGTAACCTAAGGCGTGGCATTCACTGAAACAAATGTGACCAGTTACAGTACATTACTGCTCGAAGATAGACCTCCATTACAAAATGCTGTACTGACTAGTATAAGTGATAGATGCTGCGACTTTCTTTAGTCAGCTAGCTAGAAGCTGTTAATAAATGAATATAGCAGGCTTTTGGCCATGTATAACCATGCTGACCGAGTTTGAATTCATTACCTAAAAAAAAATGGATATAGCAGGCAACCGCTGATATGATTTTTTTTCCCTCATTTTTTTGATGTGCAATGAGTTGTTCGGTGCTCATATTTTTGTAAGCCGCTGATATAGCAGGCAGACGCTGATATACTTCTTAACTTCCATTTGATGTATGATCAATGTATATATACTAAATTGCAAGCATATGTGTTGCCTTCAAACGAAA] consensusID : consensus_5662#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 690 fasta sequence [CCAGAACTTCTTAGATTGGATGCAGCAGCTCAGGCAAACATAGAGAAACATAGGAATTTGCAAGTAAGATTTGACTAATGAAATTGTTGAATTAGCACGCCAGCTGAAGGATAGCAGTCTTATGATGAACCAGTCTGTGCAAGCAACAGAGAAGATACTTGATTCAACTGAAAGGGCTGTGGCATATAGCTTGGCAGGCACTGACCGTGCAAATGCACGAGCTGTGGAGGTGTCTTCGTTAACCTCCAAAACAACTTGTTTCCACTGGTTTCTGCTTTTTGTAATGACCTGTATGTTCATCATGGTTGTTCTACTTATACGGGTAACCTAAGGCGTGGCATTCACTGAAACAAATGTACCAGTTACGATACATTACTGCTCGAAGATAGACCTCCATTACAAAATGCTGTACTGACTAGTATAAGTGATAGATGCTGCGACTTTCTTTAGTCAGCTAGCTAGAAAAATATAGCAGGTTTTTGGCCATGTATTACCATGCTGTTGGATGGAGAGACCGAGTTTGAATCCATTACCTAAAAAAATGGATATAGCAGACAACCGCTGATGATTTTTCCCCTCATTTTTTTGTAAGTGCAATGAGTTGTTCGGAGTTCATATTTTTGTAAGCCGCTGATATAGTAGGCAGACGCTGATATACTTCTTAATTTCCATTTGATGTATTTATACTAA] [-] EMBL CB627239 [CCAGAACTTCTTAGATTGGATGCAGCAGCTCAGGCAAACATAGAGAAACATAGGAATTTGCAAGTAAGATTTGACTAATGAAATTGTTGAATTAGCACGCCAGCTGAAGGATAGCAGTCTTATGATGAACCAGTCTGTGCAAGCAACAGAGAAGATACTTGATTCAACTGAAAGGGCTGTGGCATATAGCTTGGCAGGCACTGACCGTGCAAATGCACGAGCTGTGGAGGTGTCTTCGTTAACCTCCAAAACAACTTGTTTCCACTGGTTTCTGCTTTTTGTAATGACCTGTATGTTCATCATGGTTGTTCTACTTATACGGGTAACCTAAGGCGTGGCATTCACTGAAACAAATGTACCAGTTACGATACATTACTGCTCGAAGATAGACCTCCATTACAAAATGCTGTACTGACTAGTATAAGTGATAGATGCTGCGACTTTCTTTAGTCAGCTAGCTAGAAAAATATAGCAGGTTTTTGGCCATGTATTACCATGCTGTTGGATGGAGAGACCGAGTTTGAATCCATTACCTAAAAAAATGGATATAGCAGACAACCGCTGATGATTTTTCCCCTCATTTTTTTGTAAGTGCAATGAGTTGTTCGGAGTTCATATTTTTGTAAGCCGCTGATATAGTAGGCAGACGCTGATATACTTCTTAATTTCCATTTGATGTATTTATACTAA] [-] EMBL CB627238 [ CTGACTAGTATAAGTGATAGATGCTGCGACTTTCTTTAGTCAGCTAGCTAGAAAAATATAGCAGGTTTTTGGCCATGTATTACCATGCTGTTGGATGGAGAGACCGAGTTTGAATCCATTACCTAAAAAAATGGATATAGCAGACACCCGCTGATGATTTTTCCCCTCATTTTTTTGTAAGTGCAATGAGTTGTTCGGAGTTCATATTTTTGTAAGCCGCTGATATAGTAGGCAGACGCTGATATACTTCTTAATTTCCATTTGATGTATTTATACTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5662#0 TCTCGGCCCATCAGGCCCAGCACCCAAACCGCTGTGCTCCCTTCGTGGCGGCGACGCCGA 60 consensus_5662#1 ------------------------------------------------------------ consensus_5662#0 CGAGGCGTACGCGTCTTCTCCGCCGCCGCCGCCGCCGCCGCCGTCCGTCCGTCCGTCCGG 120 consensus_5662#1 ------------------------------------------------------------ consensus_5662#0 TCGGCCAGCCGGCAACGGCCACCCGTGAGCGACATCCGCGACCGGCCAGAACCGCTTCCT 180 consensus_5662#1 ------------------------------------------------------------ consensus_5662#0 TTGGTAGTCCGTGCCCGACGCCAACAAGCGGAGGAGATATCCCACAATGGGCATCAGTAA 240 consensus_5662#1 ------------------------------------------------------------ consensus_5662#0 GACTGAAGTGAATCTGCTGCGGTTGCTTGACTCGGCTCCGCGGCAGCAGAACCAGGCTAA 300 consensus_5662#1 ------------------------------------------------------------ consensus_5662#0 ACTCATTCATTATGTCACCACATCGAGGGAACTGTTGGAGAAGCTGGCAGCGGAAAATAC 360 consensus_5662#1 ------------------------------------------------------------ consensus_5662#0 GTCAGAAGGGATATCAAGTATTGCAAAAGGAAGGCTAAATGAGTATTCAGAGAGGATTGA 420 consensus_5662#1 ------------------------------------------------------------ consensus_5662#0 GGAACTTGCCGCAAGGCTTGCTTCTCTAGTGCCTGGTTACGAAAATGCTGTTGAAGCCAT 480 consensus_5662#1 ------------------------------------------------------------ consensus_5662#0 CAGAAAAGAAGAAAGTTACCTTGAAGGGGAACAAATTAGAAGTCCAATAGCCTTATCCCC 540 consensus_5662#1 ------------------------------------------------------------ consensus_5662#0 TGGATTGAGGAGGCGATTGACAGCTCTGCAAGAGATTGAACAACCTACCAATGCAAAAGA 600 consensus_5662#1 ------------------------------------------------------------ consensus_5662#0 AAGAAATGTTGCAGAACCTCTTAGATTAGATGAAGCAGCCCAGGCAAACATAGAGAAATA 660 consensus_5662#1 ----------CCAGAACTTCTTAGATTGGATGCAGCAGCTCAGGCAAACATAGAGAAACA 50 ****** ********* **** ****** ****************** * consensus_5662#0 TAGGAATCTGCAAG-AAGATTTGACTGATGAGATTGTTGAATTAGCACGCCAGCTGAAGG 719 consensus_5662#1 TAGGAATTTGCAAGTAAGATTTGACTAATGAAATTGTTGAATTAGCACGCCAGCTGAAGG 110 ******* ****** *********** **** **************************** consensus_5662#0 ATAGCAGTCTTATGATGAACCAGTCTGTGCAAGCAACAGAGAAGATACTTGATTCAACTG 779 consensus_5662#1 ATAGCAGTCTTATGATGAACCAGTCTGTGCAAGCAACAGAGAAGATACTTGATTCAACTG 170 ************************************************************ consensus_5662#0 AAAGGGCTGTGGCATATAGCTTGGCAGGCACTGACCGTGCAAATGCACAAGCTGTGGAGG 839 consensus_5662#1 AAAGGGCTGTGGCATATAGCTTGGCAGGCACTGACCGTGCAAATGCACGAGCTGTGGAGG 230 ************************************************ *********** consensus_5662#0 TGTCTTCGTTAACCTCCAAAACAACTTGTTTCCAGTGGTTTCTGCTTTTTGTAATGACCT 899 consensus_5662#1 TGTCTTCGTTAACCTCCAAAACAACTTGTTTCCACTGGTTTCTGCTTTTTGTAATGACCT 290 ********************************** ************************* consensus_5662#0 GTATGTTCATCATGGTTGTTCTACTTATACGGGTAACCTAAGGCGTGGCATTCACTGAAA 959 consensus_5662#1 GTATGTTCATCATGGTTGTTCTACTTATACGGGTAACCTAAGGCGTGGCATTCACTGAAA 350 ************************************************************ consensus_5662#0 CAAATGTGACCAGTTACAGTACATTACTGCTCGAAGATAGACCTCCATTACAAAATGCTG 1019 consensus_5662#1 CAAATGT-ACCAGTTACGATACATTACTGCTCGAAGATAGACCTCCATTACAAAATGCTG 409 ******* ********* ***************************************** consensus_5662#0 TACTGACTAGTATAAGTGATAGATGCTGCGACTTTCTTTAGTCAGCTAGCTAGAAGCTGT 1079 consensus_5662#1 TACTGACTAGTATAAGTGATAGATGCTGCGACTTTCTTTAGTCAGCTAGCTAGAAA---- 465 ******************************************************* consensus_5662#0 TAATAAATGAATATAGCAGGCTTTTGGCCATGTATAACCATGCTG------------ACC 1127 consensus_5662#1 ---------AATATAGCAGGTTTTTGGCCATGTATTACCATGCTGTTGGATGGAGAGACC 516 *********** ************** ********* *** consensus_5662#0 GAGTTTGAATTCATTACCTAAAAAAAAATGGATATAGCAGGCAACCGCTGATATGATTTT 1187 consensus_5662#1 GAGTTTGAATCCATTACCTAAAAAAA--TGGATATAGCAGACAACCGCTGATGA----TT 570 ********** *************** ************ *********** ** consensus_5662#0 TTTTCCCTCATTTTTTTG-ATGTGCAATGAGTTGTTCGGTGCTCATATTTTTGTAAGCCG 1246 consensus_5662#1 TTTCCCCTCATTTTTTTGTAAGTGCAATGAGTTGTTCGGAGTTCATATTTTTGTAAGCCG 630 *** ************** * ****************** * ****************** consensus_5662#0 CTGATATAGCAGGCAGACGCTGATATACTTCTTAACTTCCATTTGATGTATGATCAATGT 1306 consensus_5662#1 CTGATATAGTAGGCAGACGCTGATATACTTCTTAATTTCCATTTGATGTATTTATACTAA 690 ********* ************************* *************** * * consensus_5662#0 ATATATACTAAATTGCAAGCATATGTGTTGCCTTCAAACGAAA 1349 consensus_5662#1 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||