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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_567#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1526 fasta sequence
[CACCCCTTCCTCCCGCGCCTCTACGGCGTGGCCGAGGGGGATCGCTGGTCCTGCCTCCTCACCGAGTTCTGCCCCGGCGGCGACCTCCACGTCCTCCGCCAGCGGCAGCCGCACCGCCGCTTCACCGAGTCCGCCGTCAGGTTCTACGCGGCGGAGGTGGTGGCGGCGCTGGAGTACATCCACATGATGGACATCGTGTACCGTGACCTGAAGCCGGAGAACGTGCTCGTCCGCGCCGATGGCCACATCATGCTCACCGACTTCGACCTCTCGCTCAAGTGCGACCCGACGGCGCCGACGCCGGCGCACGTCATCTCGGACCCCATCGCCCTCGCCGGCAGCCACTACTCGGCGTCGTCGTCGTGCATCATCCCGTCCTGCATTGTCCCCGCCGTGTCGTGCTTCCAGCTCTTCCCCGGACGCGGGCGACGCCGGCGCCATCGCCGCAAGAAGAAGACAGCGAGTGGTGGCGGCGGCGGCATCAGCGGCAGCAGCTTCCCGGCCGGTGGGCTGGAGCTGGAGTTCGTGGCGGAGCCGGTGGAGCTCCGGTCCATGTCGTTCGTCGGCACGCACGAGTACCTCGCGCCGGAGATCGTCTCCGGCGAGGGGCACGGCAGCTCCGTCGACTGGTGGACGCTGGGGGTGTTCGTGTTCGAGCTCCTCTACGGCGTGACGCCGTTCAAGGGGTACGACAACGAGATGACCCTGGCGAACATCGTGGCGCGCGCGCTCGAGTTCCCCAGGGACCCGCCCGTCTCCTCCGCCGCCAAGGACCTCGTCACGTCGCTCCTCGCCAAGGACCCGACGCGGCGCCTCGGCGCCACGGTCGGCGCCGCGGCCATCAAGCGGCACCCGTTCTTCAGCGGCGTGAACTGGGCGCTGCTCCGGTGCGCCACGCCGCCGTACGTTCCCCCGCCGTTCAGCGTCGCGGCCGCCACCGCCGCCGCCGCCGCCGCCGACATGTCGGACGATGACAGCTGCCCCGGCACGCCCGTGGAGTACTACTAGAGACAAGCAAAGCCAAGCCAAGCCAAGGAAGCTGCCACCATGGCTGGCACCACCATGTCCGTGCAAAAGGAAAGCTGCTGCCGCCATTGGCCAGCGCACGTGGTGGTGGGGATCCCACCCATGGACCGTGGCGCATGGCGCGCACGAGGGCAAGCCGGCCGGCGGAGCAGGCGTCGAGTAGTGGGCCGGGGGCGTGGCGGGGGCGCGCCGCGCCGCGCCATGGCAAGCGACAAGGAGCACACACACACCCACCGTTCCAACGACTTATTGTCAAACTCTGAATTTTTCTCTGGCATATGCTGCCCGTCTCACTCACCTACATGCTAGCATAACATCAGCATTAGTCCTATAGTATAATAGTACTACACTTTAACTTAACCCATCTAGAACAGACAATTTAGCTTTATTATTTCGTCCAATGTTTCATGCAAAGTTTATGCATTGTACTCTCTTGTAGCGAGTTCAGACTTCAGAGTTGTATTTATGGGTTTTTTTTTAACAAGTGAAATCAACTGGAC]
[+] EMBL AK122055 [CACCCCTTCCTCCCGCGCCTCTACGGCGTGGCCGAGGGGGATCGCTGGTCCTGCCTCCTCACCGAGTTCTGCCCCGGCGGCGACCTCCACGTCCTCCGCCAGCGGCAGCCGCACCGCCGCTTCACCGAGTCCGCCGTCAGGTTCTACGCGGCGGAGGTGGTGGCGGCGCTGGAGTACATCCACATGATGGACATCGTGTACCGTGACCTGAAGCCGGAGAACGTGCTCGTCCGCGCCGATGGCCACATCATGCTCACCGACTTCGACCTCTCGCTCAAGTGCGACCCGACGGCGCCGACGCCGGCGCACGTCATCTCGGACCCCATCGCCCTCGCCGGCAGCCACTACTCGGCGTCGTCGTCGTGCATCATCCCGTCCTGCATTGTCCCCGCCGTGTCGTGCTTCCAGCTCTTCCCCGGACGCGGGCGACGCCGGCGCCATCGCCGCAAGAAGAAGACAGCGAGTGGTGGCGGCGGCGGCATCAGCGGCAGCAGCTTCCCGGCCGGTGGGCTGGAGCTGGAGTTCGTGGCGGAGCCGGTGGAGCTCCGGTCCATGTCGTTCGTCGGCACGCACGAGTACCTCGCGCCGGAGATCGTCTCCGGCGAGGGGCACGGCAGCTCCGTCGACTGGTGGACGCTGGGGGTGTTCGTGTTCGAGCTCCTCTACGGCGTGACGCCGTTCAAGGGGTACGACAACGAGATGACCCTGGCGAACATCGTGGCGCGCGCGCTCGAGTTCCCCAGGGACCCGCCCGTCTCCTCCGCCGCCAAGGACCTCGTCACGTCGCTCCTCGCCAAGGACCCGACGCGGCGCCTCGGCGCCACGGTCGGCGCCGCGGCCATCAAGCGGCACCCGTTCTTCAGCGGCGTGAACTGGGCGCTGCTCCGGTGCGCCACGCCGCCGTACGTTCCCCCGCCGTTCAGCGTCGCGGCCGCCACCGCCGCCGCCGCCGCCGCCGACATGTCGGACGATGACAGCTGCCCCGGCACGCCCGTGGAGTACTACTAGAGACAAGCAAAGCCAAGCCAAGCCAAGGAAGCTGCCACCATGGCTGGCACCACCATGTCCGTGCAAAAGGAAAGCTGCTGCCGCCATTGGCCAGCGCACGTGGTGGTGGGGATCCCACCCATGGACCGTGGCGCATGGCGCGCACGAGGGCAAGCCGGCCGGCGGAGCAGGCGTCGAGTAGTGGGCCGGGGGCGTGGCGGGGGCGCGCCGCGCCGCGCCATGGCAAGCGACAAGGAGCACACACACACCCACCGTTCCAACGACTTATTGTCAAACTCTGAATTTTTCTCTGGCATATGCTGCCCGTCTCACTCACCTACATGCTAGCATAACATCAGCATTAGTCCTATAGTATAATAGTACTACACTTTAACTTAACCCATCTAGAACAGACAATTTAGCTTTATTATTTCGTCCAATGTTTCATGCAAAGTTTATGCATTGTACTCTCTTGTAGCGAGTTCAGACTTCAGAGTTGTATTTATGGGTTTTTTTTTAACAAGTGAAATCAACTGGAC]
consensusID : consensus_567#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1246 fasta sequence
[CCGTGCATGTACGCGATGAAGGTGGTGGACCGGAGGGCGGTGGCGAGGAAGCAGAAGCTGGGGCGCGCGGCGGCGGAGAAGCGGATCCTGCGGCAGCTGGACCACCCCTTCCTCCCCACCCTCTTCGCCGACTTCGACGCCACGCCGCACTTCTCCTGCGCCGTCATGGAGTTCTGCCCCGGCGGCGACCTCCACTCCCTCCGCCACCGCATGCCGTCCCGCCGCTTCCCGCTCCCCTCCGCCCGCTTCTACGCCGCCGAGGTGCTCCTCGCCATCGAGTACCTCCACATGATGGGCATCGTCTACCGCGACCTCAAGCCCGAGAACGTCCTCATCCGCGCCGACGGCCACATCATGCTCACCGACTTCGACCTCTCGCTGCAGTCCACCACCTCGCCGTCTCTCGACGGCGACACCGACACCGACGACGAGGCCAGCGGTGGCGCGTCCTGCTTCCCGGACCACCTCCTCCGGTTCAAGCGGCGGCGGAACGCCGTGGCGGCGCCGCGTCCGCGGTTCGTGGCGGAGCCGGTGGATGCGAGGTCGTGCTCGTTCGTGGGGACGCACGAGTACGTGGCCCCCGAGGTGGCGAGCGGCGGCGCGCATGGCGCGGCCGTGGACTGGTGGGCGTACGGGGTGTTCCTCTACGAGCTCATCTACGGCCGTACGCCGTTCGCCGGCGCTACAAACGAGGCGACGCTCCGCAACATCGTCCGCCGCCCGCTCGCCTTCCCCTCCGGCTCCGGCTCGTGCGGTCCCGCCGACGCCGACGCGCGCGACCTCATCGCCCGCCTCCTCGCCAAGGACCCCGCCGCCCGCCTCGGCTCCCGCCGCGGCGCCGCCGACGTCAAGTCCCACCCCTTCTTCAAGTCCCTCAACCTCGCCCTCCTCCGTTCGTCGCGCCCGCCCGTCGTCCCCGGCGCCGGCGCCGGCGCCGCGCCGCTACACCGGTCGCAGTCGTGCAAGGCGGCGCCGACAACGCCGCCGCCGCCGACGACGACGAAGCCGGCGAACGCCACCGCGCGGTTCGACCTCTTCTGAGCATATTGACCGTTGCTGTCTGCTACTACCTACCCGCGTCGTCGCCGACATCGCCGGCGGGAGACACGCTCCGGCCACCGTGACATTAATTTCTCGTTGACCCTTAGCTACCGCGTTGAATGTACACACTGTTAATTAATTACTACTCCTAGTTAATCACTGCTAATCACCTTGCTGTTAGTACTACTAAACTAATATAATCTAG]
[+] EMBL AK106290 [CCGTGCATGTACGCGATGAAGGTGGTGGACCGGAGGGCGGTGGCGAGGAAGCAGAAGCTGGGGCGCGCGGCGGCGGAGAAGCGGATCCTGCGGCAGCTGGACCACCCCTTCCTCCCCACCCTCTTCGCCGACTTCGACGCCACGCCGCACTTCTCCTGCGCCGTCATGGAGTTCTGCCCCGGCGGCGACCTCCACTCCCTCCGCCACCGCATGCCGTCCCGCCGCTTCCCGCTCCCCTCCGCCCGCTTCTACGCCGCCGAGGTGCTCCTCGCCATCGAGTACCTCCACATGATGGGCATCGTCTACCGCGACCTCAAGCCCGAGAACGTCCTCATCCGCGCCGACGGCCACATCATGCTCACCGACTTCGACCTCTCGCTGCAGTCCACCACCTCGCCGTCTCTCGACGGCGACACCGACACCGACGACGAGGCCAGCGGTGGCGCGTCCTGCTTCCCGGACCACCTCCTCCGGTTCAAGCGGCGGCGGAACGCCGTGGCGGCGCCGCGTCCGCGGTTCGTGGCGGAGCCGGTGGATGCGAGGTCGTGCTCGTTCGTGGGGACGCACGAGTACGTGGCCCCCGAGGTGGCGAGCGGCGGCGCGCATGGCGCGGCCGTGGACTGGTGGGCGTACGGGGTGTTCCTCTACGAGCTCATCTACGGCCGTACGCCGTTCGCCGGCGCTACAAACGAGGCGACGCTCCGCAACATCGTCCGCCGCCCGCTCGCCTTCCCCTCCGGCTCCGGCTCGTGCGGTCCCGCCGACGCCGACGCGCGCGACCTCATCGCCCGCCTCCTCGCCAAGGACCCCGCCGCCCGCCTCGGCTCCCGCCGCGGCGCCGCCGACGTCAAGTCCCACCCCTTCTTCAAGTCCCTCAACCTCGCCCTCCTCCGTTCGTCGCGCCCGCCCGTCGTCCCCGGCGCCGGCGCCGGCGCCGCGCCGCTACACCGGTCGCAGTCGTGCAAGGCGGCGCCGACAACGCCGCCGCCGCCGACGACGACGAAGCCGGCGAACGCCACCGCGCGGTTCGACCTCTTCTGAGCATATTGACCGTTGCTGTCTGCTACTACCTACCCGCGTCGTCGCCGACATCGCCGGCGGGAGACACGCTCCGGCCACCGTGACATTAATTTCTCGTTGACCCTTAGCTACCGCGTTGAATGTACACACTGTTAATTAATTACTACTCCTAGTTAATCACTGCTAATCACCTTGCTGTTAGTACTACTAAACTAATATAATCTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_567#0 CACCCCTTCCTCCCGCGCCTCTACGGCGTGGCCGAGGGGGATCGCTGGTCC-TGCCTCCT 59
consensus_567#1 ------------CCGTGCATGTACGCGATGAAGGTGGTGGACCGGAGGGCGGTGGCGAGG 48
*** ** * **** ** * ** *** ** ** * ** *
consensus_567#0 CACCGAGTTCTGC----CCCGGCGGCG-ACCTCCACGTCCTCCGCCAGCGGCAGCCGCAC 114
consensus_567#1 AAGCAGAAGCTGGGGCGCGCGGCGGCGGAGAAGCGGATCCTGCGGCAGCTGGACCACCCC 108
* * *** * ******** * * **** ** **** * * * * *
consensus_567#0 CGCCGCTTCACCGAGTCCGCCG--TCAGGTTCTACGCGGCGGAGGTGGTG-GCGGCGCTG 171
consensus_567#1 TTCCTCCCCACCCTCTTCGCCGACTTCGACGCCACGCCGCACTTCTCCTGCGCCGTCATG 168
** * **** * ***** * * * **** ** * ** ** * **
consensus_567#0 GAGTACATCCACATGATGGACATCGTGTACC---GTGACCTGAAGCCGGAGAACGTGCTC 228
consensus_567#1 GAGTTCTGCCCCGGCGGCGACCTCCACTCCCTCCGCCACCGCATGCCGTCCCGCCGCTTC 228
**** * ** * *** ** * ** * *** * **** * **
consensus_567#0 GTCCGCGCCGATGGCCACATCATGCTCACCGACTTCGACCTCTCGCTCAAGTGCGACCCG 288
consensus_567#1 CCGCTCCCCTCCGCCCGCTTCTACGCCGCCGAGGTGCTCCTCGCCATCGAGTACCTCCAC 288
* * ** * ** * ** * **** * **** * ** *** * **
consensus_567#0 ACGGCGCCGACGCCGGCGCACGTCATCTCGGACCCCAT--CGCCCTCGCCGGCAGCCACT 346
consensus_567#1 ATGATG--GGCATCGTCTACCGCGACCTCAAGCCCGAGAACGTCCTCATCCGCGCCGACG 346
* * * * * ** * ** * *** *** * ** **** * ** * **
consensus_567#0 ACT-CGGCGTCGTCGTCGTGCATCATCCCGTCCTGCATTGTCCCCGCCGTGTCGTGCTTC 405
consensus_567#1 GCCACATCATGCTCACCGACTTCGACCTCTCGCTGCAGT-CCACCACCTCGCCGT-CTCT 404
* * * * ** ** * * * ***** * * ** ** * *** **
consensus_567#0 CAGCTCTTCCCCGGACGCGGGCGACGCCGGCGCCATCGCCGCAAGAAGAAGACAGCGAGT 465
consensus_567#1 CGACGGCGACACCGACACCGACGACGAGGCCAGCGGTGGCGCGTCCTG----CTTCCCGG 460
* * * * *** * * ***** * * * * *** * * * *
consensus_567#0 GGTGGCGGCGGCGGCATCAGCGGCAGCAGCTTCCCGGCCGGTGG-GCTGGAGCTGGAGTT 524
consensus_567#1 ACCACCTCCTCCGGTTCAAGCGGCGGCGGAACGCCG--TGGCGGCGCCGCGTCCGCGGTT 518
* * *** ****** ** * *** ** ** ** * * * ***
consensus_567#0 CGTGGCGGAGCCGGTGGAGCTCCGGTCCATGTCGTTCGTCGGCACGCACGAGTACCTCGC 584
consensus_567#1 CGTGGCGGAGCCGGTGGATGCGAGGTCGTGCTCGTTCGTGGGGACGCACGAGTACGTGGC 578
****************** **** ******** ** ************ * **
consensus_567#0 GCCGGAGATCGTCTCCGGCGAGGGGCACGGCAGCTCCGTCGACTGGTGGACGCTGGGGGT 644
consensus_567#1 CCCCGAGGTGGCGAGCGGCGGCGCGCATGGCGCGGCCGTGGACTGGTGGGCGTACGGGGT 638
** *** * * ***** * *** *** **** ********* ** *****
consensus_567#0 GTTCGTGTTCGAGCTCCTCTACGGCGTGACGCCGTTCAAGGGGTACGACAACGAGATGAC 704
consensus_567#1 GTTCCTCTACGAGCTCATCTACGGCCGTACGCCGTTCGCCGGCGCTACAAACGAGGCGAC 698
**** * * ******* ******** ********* ** ****** ***
consensus_567#0 CCTGGCGAACATCGTGGCGCGCGCGCTCGAGTTCCCCAGGGACCC--GCCCGT----CTC 758
consensus_567#1 GCTCCGCAACATCGTCCGCCGCCCGCTCGCCTTCCCCTCCGGCTCCGGCTCGTGCGGTCC 758
** ******** *** ****** ****** * * * ** *** *
consensus_567#0 CTCCGCCGCCAAGG------ACCTCGTCACGTCGCTCCTCGCCAAGGACCCGACGCGGCG 812
consensus_567#1 CGCCGACGCCGACGCGCGCGACCTCATCGCCCGCCTCCTCGCCAAGGACCCCGCCGCCCG 818
* *** **** * * ***** ** * ***************** * **
consensus_567#0 CCTCGGCGCCACGGTCGGCGCCGCGGCCATCAAGCGGCACCCGTTCTTCAGCGGCGTGAA 872
consensus_567#1 CCTCGGCTCCCGCCGCGGCGCCGCCGACGTCAAGTCCCACCCCTTCTTCAAGTCCCTCAA 878
******* ** ********* * * ***** ***** ******* * * **
consensus_567#0 CTGGGCGCTGCTCCGGTGCGCCACGCCGCCGTACGTTCCCCCGCCGTTCAGCGTCGCGGC 932
consensus_567#1 CCTCGCCCTCCTCCG-TTCGTCGCGCC--CGCCCGTCGTCCC------CGGCGCCGGCGC 929
* ** ** ***** * ** * **** ** *** *** * *** ** **
consensus_567#0 CGCCACCGCCGCCGCCGCCGCCGCCGACATGTCGGACGATGACAGCTGCCCCGGCACGCC 992
consensus_567#1 CGGCGCCGC-GCCGCTAC-ACCGGTCGCA-GTCGTGCAA----GGCGGCGCCGACAACGC 982
** * **** ***** * *** ** **** * * ** ** *** ** *
consensus_567#0 CGTGGAGTACTACTAGAGACAAGCAAAGCCAAGCCAAGCCAAGGAAGCTGCCACCATGGC 1052
consensus_567#1 CGC----CGCCGCCGACGACGA-----------CGAAGCCGGCGAA--CGCCACCGCG-- 1023
** * * *** * * ***** *** ****** *
consensus_567#0 TGGCACCACCATGTCCGTGCAAAAGGAAAGCTGCTGCCGCCATTGGCCAGCGCACGTGGT 1112
consensus_567#1 CGGTTCGACCTCTTCTGAGCATATTGACCGTTGCTGTCTGCTACTACCTACCCGCGTCGT 1083
** * *** ** * *** * ** * ***** * * ** * * *** **
consensus_567#0 GGTGGGGATCCCACCCATGGACCGTGGCGCATGGCGCGCACGAGGGCAAGCCGGCCGGCG 1172
consensus_567#1 CGCCGACATCGC------------CGGCGGGAGACACGCTCC-GGCCACCGTGAC--ATT 1128
* * *** * **** * * *** * ** ** * *
consensus_567#0 GAGCAGGCGTCGAGTAGTGGGCCGGGGGCGTGGCGGGGGCGCGCCGCGCCGCGCCATGGC 1232
consensus_567#1 AATTTCTCGTTGACCCTTAGCT----ACCGCGTTGAATGTACACACTGTTAATTAATTAC 1184
* *** ** * * ** * * * * * * ** *
consensus_567#0 AAGCGACAAGGAGCACACACACACCCACCGTTCCAACGACTTATTGTCAAACTCTGAATT 1292
consensus_567#1 TA-CTCCTAGTTAATCACTGCTAATCACCTTGCTGTTAG--TACTACTAAACT----AAT 1237
* * * ** *** * **** * * ** * ***** * *
consensus_567#0 TTTCTCTGGCATATGCTGCCCGTCTCACTCACCTACATGCTAGCATAACATCAGCATTAG 1352
consensus_567#1 ATAATCTAG--------------------------------------------------- 1246
* *** *
consensus_567#0 TCCTATAGTATAATAGTACTACACTTTAACTTAACCCATCTAGAACAGACAATTTAGCTT 1412
consensus_567#1 ------------------------------------------------------------
consensus_567#0 TATTATTTCGTCCAATGTTTCATGCAAAGTTTATGCATTGTACTCTCTTGTAGCGAGTTC 1472
consensus_567#1 ------------------------------------------------------------
consensus_567#0 AGACTTCAGAGTTGTATTTATGGGTTTTTTTTTAACAAGTGAAATCAACTGGAC 1526
consensus_567#1 ------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||