These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_568#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence [CTTCAAAGTTGACTCCATCCCGGCCCATCCATATTCGCTTTTCCGACCAGCGAATTCAATCAACCCAACACCGCGATCATGGCTGACGAATACGATGCCGAGCAGGCTGCTGAGCTCAAGAGAAAGAGAGCGTTCCGAAAGTTCTCTTACCGTGGAATCGACCTTGACCAGCTTTTGGACATGTCCAGCGAAGACCTCGCTGGTATCTTCCCTGCCCGCCAGAGAAGACGTATCAACCGTGGCCTGAAGCGCCGCCCCATGGGTCTTATCAAGAAGCTTCGCAAGGCCAAGCAGGAGGCTGAGGCCAACGAGAAGCCCGAGGTTGTCAAGACTCACCTCCGAGACATGATCATCGTTCCCGAGATGATCGGTAGCGTCATTGGCATCTACTCCGGCAAGCAGTTCAACCAGGTCGAGATCAAGCCTGAGATGGTTGGTCACTACTTGGCTGAGTTCTCTATCTCATACCAACCCGTCAAGCACGGTCGACCCGGTATCGGTGCCACTCACTCTTCTCGTTTCATTCCCCTCAAGCAAGAAGGTTGCGGTTTGGGTGGTTTCTGCATTCTCGGACATTTGGGCGAAAAGGACTGGTTCTGGTAGAGAAAACATCTATCAAAATTATTGATGACAATGGGTACGATGATAGTACAATGAAGGAGCATTG] [+] EMBL CA764266 [CTTCAAAGTTGACTCCATCCCGGCCCATCCATATTCGCTTTTCCGACCAGCGAATTCAATCAACCCAACACCGCGATCATGGCTGACGAATACGATGCCGAGCAGGCTGCTGAGCTCAAGAGAAAGAGAGCGTTCCGAAAGTTCTCTTACCGTGGAATCGACCTTGACCAGCTTTTGGACATGTCCAGCGAAGACCTCGCTGGTATCTTCCCTGCCCGCCAGAGAAGACGTATCAACCGTGGCCTGAAGCGCCGCCCCATGGGTCTTATCAAGAAGCTTCGCAAGGCCAAGCAGGAGGCTGAGGCCAACGAGAAGCCCGAGGTTGTCAAGACTCACCTCCGAGACATGATCATCGTTCCCGAGATGATCGGTAGCGTCATTGGCATCTACTCCGGCAAGCAGTTCAACCAGGTCGAGATCAAGCCTGAGATGGTTGGTCACTACTTGGCTGAGTTCTCTATCTCATACCAACCCGTCAAGCACGGTCGACCCGGTATCGGTGCCACTCACTCTTCTCGTTTCATTCCCCTCAAGCAAGAAGGTTGCGGTTTGGGTGGTTTCTGCATTCTCGGACATTTGGGCGAAAAGGACTGGTTCTGGTAGAGAAAACATCTATCAAAATTATTGATGACAATGGGTACGATGATAGTACAATGAAGGAGCATTG] consensusID : consensus_568#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence [CAACGAGACAAGGGGAGCGAATTCAATCAACCCAACACCGCGATCATGGCTGACGAATACGATGCCGAGCAGGCTGCTGAGCTCAAGAGAAAGAGAGCGTTCCGAAAGTTCTCTTACCGTGGAATCGACCTTGACCAGCTTTTGGACATGTCCAGCGAAGACCTCGCTGGTATCTTCCCTGCCCGCCAGAGAAGACGTATCAACCGTGGCCTGAAGCGCCGCCCCATGGGTCTTATCAAGAAGCTTCGCAAGGCCAAGCAGGAGGCTGAGGCCAACGAGAAGCCCGAGGTTGTCAAGACTCACCTCCGAGACATGATTATCGTTCCCGAGATGATCGGTAGCGTCATTGGCATCTACTCCGGCAAGCAGTTCAACCAGGTCGAGATCAAGCCTGAGATGGTTGGTCACTACTTGGCTGAGTTCTCTATCTCATACCAACCCGTCAAGCACGGTCGACCCGGTATCGGTGCCACTCACTCTTCTCGTTTCATTCCCCTCAAGTAAGAAGGTTGCGGTTTGGGTGGTTTTTGCATTCTTGGACATTTGGGCGAAAAGGACTGGTTCTGGTAGAGAAAACATCTATCAAAATTATTGATGACAATGGGTACGATGATAGTACAATAAAGGAGCATTGTCCGCTTGATGACTNCCCTCAAAAAAAAAAAA] [-] EMBL CA759558 [CAACGAGACAAGGGGAGCGAATTCAATCAACCCAACACCGCGATCATGGCTGACGAATACGATGCCGAGCAGGCTGCTGAGCTCAAGAGAAAGAGAGCGTTCCGAAAGTTCTCTTACCGTGGAATCGACCTTGACCAGCTTTTGGACATGTCCAGCGAAGACCTCGCTGGTATCTTCCCTGCCCGCCAGAGAAGACGTATCAACCGTGGCCTGAAGCGCCGCCCCATGGGTCTTATCAAGAAGCTTCGCAAGGCCAAGCAGGAGGCTGAGGCCAACGAGAAGCCCGAGGTTGTCAAGACTCACCTCCGAGACATGATTATCGTTCCCGAGATGATCGGTAGCGTCATTGGCATCTACTCCGGCAAGCAGTTCAACCAGGTCGAGATCAAGCCTGAGATGGTTGGTCACTACTTGGCTGAGTTCTCTATCTCATACCAACCCGTCAAGCACGGTCGACCCGGTATCGGTGCCACTCACTCTTCTCGTTTCATTCCCCTCAAGTAAGAAGGTTGCGGTTTGGGTGGTTTTTGCATTCTTGGACATTTGGGCGAAAAGGACTGGTTCTGGTAGAGAAAACATCTATCAAAATTATTGATGACAATGGGTACGATGATAGTACAATAAAGGAGCATTGTCCGCTTGATGACTNCCCTCAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_568#0 CTTCAAAGTTGACTCCATCCCGGCCCATCCATATTCGCTTTTCCGACCAGCGAATTCAAT 60 consensus_568#1 -------------------------CAACGAGA--------CAAGGGGAGCGAATTCAAT 27 ** * * * * ************ consensus_568#0 CAACCCAACACCGCGATCATGGCTGACGAATACGATGCCGAGCAGGCTGCTGAGCTCAAG 120 consensus_568#1 CAACCCAACACCGCGATCATGGCTGACGAATACGATGCCGAGCAGGCTGCTGAGCTCAAG 87 ************************************************************ consensus_568#0 AGAAAGAGAGCGTTCCGAAAGTTCTCTTACCGTGGAATCGACCTTGACCAGCTTTTGGAC 180 consensus_568#1 AGAAAGAGAGCGTTCCGAAAGTTCTCTTACCGTGGAATCGACCTTGACCAGCTTTTGGAC 147 ************************************************************ consensus_568#0 ATGTCCAGCGAAGACCTCGCTGGTATCTTCCCTGCCCGCCAGAGAAGACGTATCAACCGT 240 consensus_568#1 ATGTCCAGCGAAGACCTCGCTGGTATCTTCCCTGCCCGCCAGAGAAGACGTATCAACCGT 207 ************************************************************ consensus_568#0 GGCCTGAAGCGCCGCCCCATGGGTCTTATCAAGAAGCTTCGCAAGGCCAAGCAGGAGGCT 300 consensus_568#1 GGCCTGAAGCGCCGCCCCATGGGTCTTATCAAGAAGCTTCGCAAGGCCAAGCAGGAGGCT 267 ************************************************************ consensus_568#0 GAGGCCAACGAGAAGCCCGAGGTTGTCAAGACTCACCTCCGAGACATGATCATCGTTCCC 360 consensus_568#1 GAGGCCAACGAGAAGCCCGAGGTTGTCAAGACTCACCTCCGAGACATGATTATCGTTCCC 327 ************************************************** ********* consensus_568#0 GAGATGATCGGTAGCGTCATTGGCATCTACTCCGGCAAGCAGTTCAACCAGGTCGAGATC 420 consensus_568#1 GAGATGATCGGTAGCGTCATTGGCATCTACTCCGGCAAGCAGTTCAACCAGGTCGAGATC 387 ************************************************************ consensus_568#0 AAGCCTGAGATGGTTGGTCACTACTTGGCTGAGTTCTCTATCTCATACCAACCCGTCAAG 480 consensus_568#1 AAGCCTGAGATGGTTGGTCACTACTTGGCTGAGTTCTCTATCTCATACCAACCCGTCAAG 447 ************************************************************ consensus_568#0 CACGGTCGACCCGGTATCGGTGCCACTCACTCTTCTCGTTTCATTCCCCTCAAGCAAGAA 540 consensus_568#1 CACGGTCGACCCGGTATCGGTGCCACTCACTCTTCTCGTTTCATTCCCCTCAAGTAAGAA 507 ****************************************************** ***** consensus_568#0 GGTTGCGGTTTGGGTGGTTTCTGCATTCTCGGACATTTGGGCGAAAAGGACTGGTTCTGG 600 consensus_568#1 GGTTGCGGTTTGGGTGGTTTTTGCATTCTTGGACATTTGGGCGAAAAGGACTGGTTCTGG 567 ******************** ******** ****************************** consensus_568#0 TAGAGAAAACATCTATCAAAATTATTGATGACAATGGGTACGATGATAGTACAATGAAGG 660 consensus_568#1 TAGAGAAAACATCTATCAAAATTATTGATGACAATGGGTACGATGATAGTACAATAAAGG 627 ******************************************************* **** consensus_568#0 AGCATTG-------------------------------- 667 consensus_568#1 AGCATTGTCCGCTTGATGACTNCCCTCAAAAAAAAAAAA 666 ******* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||