cluster # 568

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Oryza sativa
cluster # 568 cluster # 568 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_568#0 length = 667 sequences # 1

consensus_568#1 length = 666 sequences # 1

consensusID : consensus_568#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 667
fasta sequence

                              [CTTCAAAGTTGACTCCATCCCGGCCCATCCATATTCGCTTTTCCGACCAGCGAATTCAATCAACCCAACACCGCGATCATGGCTGACGAATACGATGCCGAGCAGGCTGCTGAGCTCAAGAGAAAGAGAGCGTTCCGAAAGTTCTCTTACCGTGGAATCGACCTTGACCAGCTTTTGGACATGTCCAGCGAAGACCTCGCTGGTATCTTCCCTGCCCGCCAGAGAAGACGTATCAACCGTGGCCTGAAGCGCCGCCCCATGGGTCTTATCAAGAAGCTTCGCAAGGCCAAGCAGGAGGCTGAGGCCAACGAGAAGCCCGAGGTTGTCAAGACTCACCTCCGAGACATGATCATCGTTCCCGAGATGATCGGTAGCGTCATTGGCATCTACTCCGGCAAGCAGTTCAACCAGGTCGAGATCAAGCCTGAGATGGTTGGTCACTACTTGGCTGAGTTCTCTATCTCATACCAACCCGTCAAGCACGGTCGACCCGGTATCGGTGCCACTCACTCTTCTCGTTTCATTCCCCTCAAGCAAGAAGGTTGCGGTTTGGGTGGTTTCTGCATTCTCGGACATTTGGGCGAAAAGGACTGGTTCTGGTAGAGAAAACATCTATCAAAATTATTGATGACAATGGGTACGATGATAGTACAATGAAGGAGCATTG]

[+] EMBL CA764266             [CTTCAAAGTTGACTCCATCCCGGCCCATCCATATTCGCTTTTCCGACCAGCGAATTCAATCAACCCAACACCGCGATCATGGCTGACGAATACGATGCCGAGCAGGCTGCTGAGCTCAAGAGAAAGAGAGCGTTCCGAAAGTTCTCTTACCGTGGAATCGACCTTGACCAGCTTTTGGACATGTCCAGCGAAGACCTCGCTGGTATCTTCCCTGCCCGCCAGAGAAGACGTATCAACCGTGGCCTGAAGCGCCGCCCCATGGGTCTTATCAAGAAGCTTCGCAAGGCCAAGCAGGAGGCTGAGGCCAACGAGAAGCCCGAGGTTGTCAAGACTCACCTCCGAGACATGATCATCGTTCCCGAGATGATCGGTAGCGTCATTGGCATCTACTCCGGCAAGCAGTTCAACCAGGTCGAGATCAAGCCTGAGATGGTTGGTCACTACTTGGCTGAGTTCTCTATCTCATACCAACCCGTCAAGCACGGTCGACCCGGTATCGGTGCCACTCACTCTTCTCGTTTCATTCCCCTCAAGCAAGAAGGTTGCGGTTTGGGTGGTTTCTGCATTCTCGGACATTTGGGCGAAAAGGACTGGTTCTGGTAGAGAAAACATCTATCAAAATTATTGATGACAATGGGTACGATGATAGTACAATGAAGGAGCATTG]




>consensus_568#0
CTTCAAAGTTGACTCCATCCCGGCCCATCCATATTCGCTTTTCCGACCAGCGAATTCAAT
CAACCCAACACCGCGATCATGGCTGACGAATACGATGCCGAGCAGGCTGCTGAGCTCAAG
AGAAAGAGAGCGTTCCGAAAGTTCTCTTACCGTGGAATCGACCTTGACCAGCTTTTGGAC
ATGTCCAGCGAAGACCTCGCTGGTATCTTCCCTGCCCGCCAGAGAAGACGTATCAACCGT
GGCCTGAAGCGCCGCCCCATGGGTCTTATCAAGAAGCTTCGCAAGGCCAAGCAGGAGGCT
GAGGCCAACGAGAAGCCCGAGGTTGTCAAGACTCACCTCCGAGACATGATCATCGTTCCC
GAGATGATCGGTAGCGTCATTGGCATCTACTCCGGCAAGCAGTTCAACCAGGTCGAGATC
AAGCCTGAGATGGTTGGTCACTACTTGGCTGAGTTCTCTATCTCATACCAACCCGTCAAG
CACGGTCGACCCGGTATCGGTGCCACTCACTCTTCTCGTTTCATTCCCCTCAAGCAAGAA
GGTTGCGGTTTGGGTGGTTTCTGCATTCTCGGACATTTGGGCGAAAAGGACTGGTTCTGG
TAGAGAAAACATCTATCAAAATTATTGATGACAATGGGTACGATGATAGTACAATGAAGG
AGCATTG

consensusID : consensus_568#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 666
fasta sequence

                              [CAACGAGACAAGGGGAGCGAATTCAATCAACCCAACACCGCGATCATGGCTGACGAATACGATGCCGAGCAGGCTGCTGAGCTCAAGAGAAAGAGAGCGTTCCGAAAGTTCTCTTACCGTGGAATCGACCTTGACCAGCTTTTGGACATGTCCAGCGAAGACCTCGCTGGTATCTTCCCTGCCCGCCAGAGAAGACGTATCAACCGTGGCCTGAAGCGCCGCCCCATGGGTCTTATCAAGAAGCTTCGCAAGGCCAAGCAGGAGGCTGAGGCCAACGAGAAGCCCGAGGTTGTCAAGACTCACCTCCGAGACATGATTATCGTTCCCGAGATGATCGGTAGCGTCATTGGCATCTACTCCGGCAAGCAGTTCAACCAGGTCGAGATCAAGCCTGAGATGGTTGGTCACTACTTGGCTGAGTTCTCTATCTCATACCAACCCGTCAAGCACGGTCGACCCGGTATCGGTGCCACTCACTCTTCTCGTTTCATTCCCCTCAAGTAAGAAGGTTGCGGTTTGGGTGGTTTTTGCATTCTTGGACATTTGGGCGAAAAGGACTGGTTCTGGTAGAGAAAACATCTATCAAAATTATTGATGACAATGGGTACGATGATAGTACAATAAAGGAGCATTGTCCGCTTGATGACTNCCCTCAAAAAAAAAAAA]

[-] EMBL CA759558             [CAACGAGACAAGGGGAGCGAATTCAATCAACCCAACACCGCGATCATGGCTGACGAATACGATGCCGAGCAGGCTGCTGAGCTCAAGAGAAAGAGAGCGTTCCGAAAGTTCTCTTACCGTGGAATCGACCTTGACCAGCTTTTGGACATGTCCAGCGAAGACCTCGCTGGTATCTTCCCTGCCCGCCAGAGAAGACGTATCAACCGTGGCCTGAAGCGCCGCCCCATGGGTCTTATCAAGAAGCTTCGCAAGGCCAAGCAGGAGGCTGAGGCCAACGAGAAGCCCGAGGTTGTCAAGACTCACCTCCGAGACATGATTATCGTTCCCGAGATGATCGGTAGCGTCATTGGCATCTACTCCGGCAAGCAGTTCAACCAGGTCGAGATCAAGCCTGAGATGGTTGGTCACTACTTGGCTGAGTTCTCTATCTCATACCAACCCGTCAAGCACGGTCGACCCGGTATCGGTGCCACTCACTCTTCTCGTTTCATTCCCCTCAAGTAAGAAGGTTGCGGTTTGGGTGGTTTTTGCATTCTTGGACATTTGGGCGAAAAGGACTGGTTCTGGTAGAGAAAACATCTATCAAAATTATTGATGACAATGGGTACGATGATAGTACAATAAAGGAGCATTGTCCGCTTGATGACTNCCCTCAAAAAAAAAAAA]




>consensus_568#1
CAACGAGACAAGGGGAGCGAATTCAATCAACCCAACACCGCGATCATGGCTGACGAATAC
GATGCCGAGCAGGCTGCTGAGCTCAAGAGAAAGAGAGCGTTCCGAAAGTTCTCTTACCGT
GGAATCGACCTTGACCAGCTTTTGGACATGTCCAGCGAAGACCTCGCTGGTATCTTCCCT
GCCCGCCAGAGAAGACGTATCAACCGTGGCCTGAAGCGCCGCCCCATGGGTCTTATCAAG
AAGCTTCGCAAGGCCAAGCAGGAGGCTGAGGCCAACGAGAAGCCCGAGGTTGTCAAGACT
CACCTCCGAGACATGATTATCGTTCCCGAGATGATCGGTAGCGTCATTGGCATCTACTCC
GGCAAGCAGTTCAACCAGGTCGAGATCAAGCCTGAGATGGTTGGTCACTACTTGGCTGAG
TTCTCTATCTCATACCAACCCGTCAAGCACGGTCGACCCGGTATCGGTGCCACTCACTCT
TCTCGTTTCATTCCCCTCAAGTAAGAAGGTTGCGGTTTGGGTGGTTTTTGCATTCTTGGA
CATTTGGGCGAAAAGGACTGGTTCTGGTAGAGAAAACATCTATCAAAATTATTGATGACA
ATGGGTACGATGATAGTACAATAAAGGAGCATTGTCCGCTTGATGACTNCCCTCAAAAAA
AAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_568#0      CTTCAAAGTTGACTCCATCCCGGCCCATCCATATTCGCTTTTCCGACCAGCGAATTCAAT 60
consensus_568#1      -------------------------CAACGAGA--------CAAGGGGAGCGAATTCAAT 27
                                              ** * * *           *   ************

consensus_568#0      CAACCCAACACCGCGATCATGGCTGACGAATACGATGCCGAGCAGGCTGCTGAGCTCAAG 120
consensus_568#1      CAACCCAACACCGCGATCATGGCTGACGAATACGATGCCGAGCAGGCTGCTGAGCTCAAG 87
                     ************************************************************

consensus_568#0      AGAAAGAGAGCGTTCCGAAAGTTCTCTTACCGTGGAATCGACCTTGACCAGCTTTTGGAC 180
consensus_568#1      AGAAAGAGAGCGTTCCGAAAGTTCTCTTACCGTGGAATCGACCTTGACCAGCTTTTGGAC 147
                     ************************************************************

consensus_568#0      ATGTCCAGCGAAGACCTCGCTGGTATCTTCCCTGCCCGCCAGAGAAGACGTATCAACCGT 240
consensus_568#1      ATGTCCAGCGAAGACCTCGCTGGTATCTTCCCTGCCCGCCAGAGAAGACGTATCAACCGT 207
                     ************************************************************

consensus_568#0      GGCCTGAAGCGCCGCCCCATGGGTCTTATCAAGAAGCTTCGCAAGGCCAAGCAGGAGGCT 300
consensus_568#1      GGCCTGAAGCGCCGCCCCATGGGTCTTATCAAGAAGCTTCGCAAGGCCAAGCAGGAGGCT 267
                     ************************************************************

consensus_568#0      GAGGCCAACGAGAAGCCCGAGGTTGTCAAGACTCACCTCCGAGACATGATCATCGTTCCC 360
consensus_568#1      GAGGCCAACGAGAAGCCCGAGGTTGTCAAGACTCACCTCCGAGACATGATTATCGTTCCC 327
                     ************************************************** *********

consensus_568#0      GAGATGATCGGTAGCGTCATTGGCATCTACTCCGGCAAGCAGTTCAACCAGGTCGAGATC 420
consensus_568#1      GAGATGATCGGTAGCGTCATTGGCATCTACTCCGGCAAGCAGTTCAACCAGGTCGAGATC 387
                     ************************************************************

consensus_568#0      AAGCCTGAGATGGTTGGTCACTACTTGGCTGAGTTCTCTATCTCATACCAACCCGTCAAG 480
consensus_568#1      AAGCCTGAGATGGTTGGTCACTACTTGGCTGAGTTCTCTATCTCATACCAACCCGTCAAG 447
                     ************************************************************

consensus_568#0      CACGGTCGACCCGGTATCGGTGCCACTCACTCTTCTCGTTTCATTCCCCTCAAGCAAGAA 540
consensus_568#1      CACGGTCGACCCGGTATCGGTGCCACTCACTCTTCTCGTTTCATTCCCCTCAAGTAAGAA 507
                     ****************************************************** *****

consensus_568#0      GGTTGCGGTTTGGGTGGTTTCTGCATTCTCGGACATTTGGGCGAAAAGGACTGGTTCTGG 600
consensus_568#1      GGTTGCGGTTTGGGTGGTTTTTGCATTCTTGGACATTTGGGCGAAAAGGACTGGTTCTGG 567
                     ******************** ******** ******************************

consensus_568#0      TAGAGAAAACATCTATCAAAATTATTGATGACAATGGGTACGATGATAGTACAATGAAGG 660
consensus_568#1      TAGAGAAAACATCTATCAAAATTATTGATGACAATGGGTACGATGATAGTACAATAAAGG 627
                     ******************************************************* ****

consensus_568#0      AGCATTG-------------------------------- 667
consensus_568#1      AGCATTGTCCGCTTGATGACTNCCCTCAAAAAAAAAAAA 666
                     *******