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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5683#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1918 fasta sequence
[GAGTGAGGCAAAGAGGAAGTCAGGGAACGGAAGGGTTGAGATGGAGATCAGCACAGTGCTGGGCGCAATATTGGCAGAGTACGCGGTCACCTTGGTGGCCATGGCTGTGGGTTTCCTGGTGGTAGGCTACTTGTACGAGCCATACTGGAAAGTGCGGCACGTGCCAGGTCCCGTGCCCCTGCCGCTCATCGGCCACCTCCACCTGCTCGCCATGCACGGGCCGGACGTGTTCTCAGTGCTCACGAGGAAGTACGGCCCCATCTTCAGGTTTCACATGGGAAGGCAACCGTTGGTCATGGTGGCGGATGCTGAGTTGTGCAAGGAAGTGGGCGTGAAGAAATTCAAGAACTTCCCCAACCGAAGTATGCCCTCACCCATTACCAATTCTCCTGTTCATCAGAAGGGCCTATTCTTCACAAGGGGCATTTTATAATATGGTCGAACTTAATGATATTTGGCATAAGATAAAACTCAAATGATCACTCGAAGAAGTAAAAGTGTTCGTGCATGCACACCGTACCGGGCCAGCTTCCATCCTTGTGGTTCGAGGTGGACGACTATGCGAAACATGATCCTCTCCATCTACCAGCCGTCGCACCTGGCCACCCTGATCCCCAGCATGGAGTCGTGTATTGAACGCGCGGCCGAGAATCTCGAGGGCCAAGAGGAGATCAACTTCTCCAAGCTCTCTCTCAGCTTCACCACTGACGTCCTCGGGCAGGCAGCGTTCGGAACGGACTTTGGCCTGTCGAAAAAGTTGGCCTCGTCGGACGACGACGAGGACACCCGCAAGATCGCGGCCGATACCTGCGCGGAGGCCAAGGCATCATCGGAGTTCATCAAGATGCACGTGCACGCGACCACGTCTCTAAAAATGGACATGTCCGGCTCGCTCTCCATCATCGTCGGCCAGCTCCTGCCGTTCCTCCATGAACCGTTCCGGCAGGTTCTCAAGAGGCTTCGCTGGACGGCGGACCACGAGATCGACCGCGTGAACCTCACGCTCGGGAGACAGCTTGACAGGATCGTCGCCGAGCGGACGGCTGCAATGAAGCGAGACCGGCGGCGCTGCAGCAGCGCAAGGACTTCCTGTCCGTCATGCTCACGGCGAGAGAGTCGAACAAATCCTCGAGGGAGCTGCTCACGCCGGACTACATCAGCGCGCTCACTTACGAGCACCTCCTCGCCGGGTCGGCCACGACGGCGTTCACTCTCACCACGGCGCTCTACCTCGTCGCCAAGCACCCGGAGGTGGAGGAGAAGCTGCTCAGAGAGATCGACGGGTTCGGACCCCGCGACCGCGTGCCGACGGCCGAGGATCTGCAGACCAAATTCCCCTACCTTGATCAGGTCCTGAAGGAAGCGATGAGATATTACCCCTCATCGCCATTGATAGCAAGGGAACTGAACCAACAGCTCGAAATTGGAGGATATCCCCTTCCAAAGGGAACATGGGTGTGGATGGCACCTGGTGTCCTAGGAAAGGATCCCAAAAATTTCCCAGAGCCAGAGGTGTTCCGGCCGGAGCGCTTCGACCCAAACGGCGAGGAAGAGAAGAGGAGGCACCCGTACGCGCTCTTCCCGTTCGGGATAGGGCCGAGGGCGTGCATCGGCCAGAAGTTCGCCATACAGGAGATGAAATTGTCAGCGATCCACTTCTACCGTCATTACGTATTTCGGCCCTCGCCCAGCATGGAGTCTCCTCCTGAGTTTGTGTACTCGATCGTCTCCAATTTCAAGAACGGCGCCAAGCTTCAGGTCATCAAGAGGCATATATAATGCTTAATCACATCATCAGGAGAACTATTCGTTTGGATTTTGGGTATTGCGCATATTATTAAGTACTCGTTTTCAGTTTATGTTGTACTGTACTTGTTTTCGCCGGGCAGTCCGTGTTGTACTCGTAATATATATGAAC]
[+] EMBL AK067688 [GAGTGAGGCAAAGAGGAAGTCAGGGAACGGAAGGGTTGAGATGGAGATCAGCACAGTGCTGGGCGCAATATTGGCAGAGTACGCGGTCACCTTGGTGGCCATGGCTGTGGGTTTCCTGGTGGTAGGCTACTTGTACGAGCCATACTGGAAAGTGCGGCACGTGCCAGGTCCCGTGCCCCTGCCGCTCATCGGCCACCTCCACCTGCTCGCCATGCACGGGCCGGACGTGTTCTCAGTGCTCACGAGGAAGTACGGCCCCATCTTCAGGTTTCACATGGGAAGGCAACCGTTGGTCATGGTGGCGGATGCTGAGTTGTGCAAGGAAGTGGGCGTGAAGAAATTCAAGAACTTCCCCAACCGAAGTATGCCCTCACCCATTACCAATTCTCCTGTTCATCAGAAGGGCCTATTCTTCACAAGGGGCATTTTATAATATGGTCGAACTTAATGATATTTGGCATAAGATAAAACTCAAATGATCACTCGAAGAAGTAAAAGTGTTCGTGCATGCACACCGTACCGGGCCAGCTTCCATCCTTGTGGTTCGAGGTGGACGACTATGCGAAACATGATCCTCTCCATCTACCAGCCGTCGCACCTGGCCACCCTGATCCCCAGCATGGAGTCGTGTATTGAACGCGCGGCCGAGAATCTCGAGGGCCAAGAGGAGATCAACTTCTCCAAGCTCTCTCTCAGCTTCACCACTGACGTCCTCGGGCAGGCAGCGTTCGGAACGGACTTTGGCCTGTCGAAAAAGTTGGCCTCGTCGGACGACGACGAGGACACCCGCAAGATCGCGGCCGATACCTGCGCGGAGGCCAAGGCATCATCGGAGTTCATCAAGATGCACGTGCACGCGACCACGTCTCTAAAAATGGACATGTCCGGCTCGCTCTCCATCATCGTCGGCCAGCTCCTGCCGTTCCTCCATGAACCGTTCCGGCAGGTTCTCAAGAGGCTTCGCTGGACGGCGGACCACGAGATCGACCGCGTGAACCTCACGCTCGGGAGACAGCTTGACAGGATCGTCGCCGAGCGGACGGCTGCAATGAAGCGAGACCGGCGGCGCTGCAGCAGCGCAAGGACTTCCTGTCCGTCATGCTCACGGCGAGAGAGTCGAACAAATCCTCGAGGGAGCTGCTCACGCCGGACTACATCAGCGCGCTCACTTACGAGCACCTCCTCGCCGGGTCGGCCACGACGGCGTTCACTCTCACCACGGCGCTCTACCTCGTCGCCAAGCACCCGGAGGTGGAGGAGAAGCTGCTCAGAGAGATCGACGGGTTCGGACCCCGCGACCGCGTGCCGACGGCCGAGGATCTGCAGACCAAATTCCCCTACCTTGATCAGGTCCTGAAGGAAGCGATGAGATATTACCCCTCATCGCCATTGATAGCAAGGGAACTGAACCAACAGCTCGAAATTGGAGGATATCCCCTTCCAAAGGGAACATGGGTGTGGATGGCACCTGGTGTCCTAGGAAAGGATCCCAAAAATTTCCCAGAGCCAGAGGTGTTCCGGCCGGAGCGCTTCGACCCAAACGGCGAGGAAGAGAAGAGGAGGCACCCGTACGCGCTCTTCCCGTTCGGGATAGGGCCGAGGGCGTGCATCGGCCAGAAGTTCGCCATACAGGAGATGAAATTGTCAGCGATCCACTTCTACCGTCATTACGTATTTCGGCCCTCGCCCAGCATGGAGTCTCCTCCTGAGTTTGTGTACTCGATCGTCTCCAATTTCAAGAACGGCGCCAAGCTTCAGGTCATCAAGAGGCATATATAATGCTTAATCACATCATCAGGAGAACTATTCGTTTGGATTTTGGGTATTGCGCATATTATTAAGTACTCGTTTTCAGTTTATGTTGTACTGTACTTGTTTTCGCCGGGCAGTCCGTGTTGTACTCGTAATATATATGAAC]
consensusID : consensus_5683#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence
[CGAATTCGGCACGAGGGGATCCCAAAAATTTCCCAGAGCCAGAGGTGTTCCGGCCGGAGCGCTTCGACCCAAACGGCGAGGAAGAGAAGAGGAGGCACCCGTACGCGCTCTTCCCGTTCGGGATAGGGCCGAGGGCGTGCATCGGCCAGAAGTTCGCCATACAGGAGATGAAATTGTCAGCGATCCACTTCTACCGTCATTACGTATTTCGGCCCTCGCCCAGCATGGAGTCTCCTCCTGAGTTTGTGTACTCGATCGTCTCCAATTTCAAGAACGGCGCCAAGCTTCAGGTCATCAAGAGGCATATATAATGCTTAATCACATCATCAGGAGAACTATTCGTTTGGATTTTGGGTATTGCGCATATTATTAAGTACTCGTTTTCAGTTTATGTTGTACTGTACTTGTTTTCGCCGGGCAGTCCGTGTTGTACTCGTAATATATATGAACCACAGCTAGCAAATCTCCGAGGCATAAAGTNTCTTATGAGTAAATATCCGAATATAAGATNTTTCTTCTCATAAAGACCTCTATAGGTAGAGGAGCAGGCCGTGGGACATATCATGTGGTACGATGAAAATAGATCTAATAAAGACCAGTATGATGTTCGCGTTAAAANAAAAAAA]
[+] EMBL CA753575 [CGAATTCGGCACGAGGGGATCCCAAAAATTTCCCAGAGCCAGAGGTGTTCCGGCCGGAGCGCTTCGACCCAAACGGCGAGGAAGAGAAGAGGAGGCACCCGTACGCGCTCTTCCCGTTCGGGATAGGGCCGAGGGCGTGCATCGGCCAGAAGTTCGCCATACAGGAGATGAAATTGTCAGCGATCCACTTCTACCGTCATTACGTATTTCGGCCCTCGCCCAGCATGGAGTCTCCTCCTGAGTTTGTGTACTCGATCGTCTCCAATTTCAAGAACGGCGCCAAGCTTCAGGTCATCAAGAGGCATATATAATGCTTAATCACATCATCAGGAGAACTATTCGTTTGGATTTTGGGTATTGCGCATATTATTAAGTACTCGTTTTCAGTTTATGTTGTACTGTACTTGTTTTCGCCGGGCAGTCCGTGTTGTACTCGTAATATATATGAACCACAGCTAGCAAATCTCCGAGGCATAAAGTNTCTTATGAGTAAATATCCGAATATAAGATNTTTCTTCTCATAAAGACCTCTATAGGTAGAGGAGCAGGCCGTGGGACATATCATGTGGTACGATGAAAATAGATCTAATAAAGACCAGTATGATGTTCGCGTTAAAANAAAAAAA]
consensusID : consensus_5683#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence
[CCGAGAATCTCGAGGGCCAAGAGGAGATCAACTTCTCCAAGCTCTCTCTCAGCTTCACCACTGACGTCCTCGGGCAGGCAGCGTTCGGAACGGACTTTGGCCTGTCGAAAAAGTTGGCCTCGTCGGACGACGACGAGGACACCCGCAAGATCGCGGCCGATACCTGCGCGGAGGCCAAGGCATCATTCGGAGTTCATCAAAGATGCACGTGCACGCGACCACGTCTTTAAAAATGGACATGTCCGGCTCGCTCTCCATCATTCGTCGGNCAGCTCCTGCCGTTCCTTCATGAACCGTTCCGGGAGGTTTCTTCAAAGAAGGCTTTCGCTTGGGACGGGCGGACCANCGAAGATCGAACGGNGTGAACCCTCACCGCTTCGGGAGAACAGCTTTGACAGGGATTCGTCGNCGAACCGGACGGGTTGNAATG]
[+] EMBL AU184539 [CCGAGAATCTCGAGGGCCAAGAGGAGATCAACTTCTCCAAGCTCTCTCTCAGCTTCACCACTGACGTCCTCGGGCAGGCAGCGTTCGGAACGGACTTTGGCCTGTCGAAAAAGTTGGCCTCGTCGGACGACGACGAGGACACCCGCAAGATCGCGGCCGATACCTGCGCGGAGGCCAAGGCATCATTCGGAGTTCATCAAAGATGCACGTGCACGCGACCACGTCTTTAAAAATGGACATGTCCGGCTCGCTCTCCATCATTCGTCGGNCAGCTCCTGCCGTTCCTTCATGAACCGTTCCGGGAGGTTTCTTCAAAGAAGGCTTTCGCTTGGGACGGGCGGACCANCGAAGATCGAACGGNGTGAACCCTCACCGCTTCGGGAGAACAGCTTTGACAGGGATTCGTCGNCGAACCGGACGGGTTGNAATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5683#0 GAGTGAGGCAAAGAGGAAGTCAGGGAACGGAAGGGTTGAGATGGAGATCAGCACAGTGCT 60
consensus_5683#2 ------------------------------------------------------------
consensus_5683#1 ------------------------------------------------------------
consensus_5683#0 GGGCGCAATATTGGCAGAGTACGCGGTCACCTTGGTGGCCATGGCTGTGGGTTTCCTGGT 120
consensus_5683#2 ------------------------------------------------------------
consensus_5683#1 ------------------------------------------------------------
consensus_5683#0 GGTAGGCTACTTGTACGAGCCATACTGGAAAGTGCGGCACGTGCCAGGTCCCGTGCCCCT 180
consensus_5683#2 ------------------------------------------------------------
consensus_5683#1 ------------------------------------------------------------
consensus_5683#0 GCCGCTCATCGGCCACCTCCACCTGCTCGCCATGCACGGGCCGGACGTGTTCTCAGTGCT 240
consensus_5683#2 ------------------------------------------------------------
consensus_5683#1 ------------------------------------------------------------
consensus_5683#0 CACGAGGAAGTACGGCCCCATCTTCAGGTTTCACATGGGAAGGCAACCGTTGGTCATGGT 300
consensus_5683#2 ------------------------------------------------------------
consensus_5683#1 ------------------------------------------------------------
consensus_5683#0 GGCGGATGCTGAGTTGTGCAAGGAAGTGGGCGTGAAGAAATTCAAGAACTTCCCCAACCG 360
consensus_5683#2 ------------------------------------------------------------
consensus_5683#1 ------------------------------------------------------------
consensus_5683#0 AAGTATGCCCTCACCCATTACCAATTCTCCTGTTCATCAGAAGGGCCTATTCTTCACAAG 420
consensus_5683#2 ------------------------------------------------------------
consensus_5683#1 ------------------------------------------------------------
consensus_5683#0 GGGCATTTTATAATATGGTCGAACTTAATGATATTTGGCATAAGATAAAACTCAAATGAT 480
consensus_5683#2 ------------------------------------------------------------
consensus_5683#1 ------------------------------------------------------------
consensus_5683#0 CACTCGAAGAAGTAAAAGTGTTCGTGCATGCACACCGTACCGGGCCAGCTTCCATCCTTG 540
consensus_5683#2 ------------------------------------------------------------
consensus_5683#1 --------------------CGAATTCGGCACGAGGGGATCCCAAAAATTTCCCAGAGCC 40
consensus_5683#0 TGGTTCGAGGTGGACGACTATGCGAAACATGATCCTCTCCATCTACCAGCCGTCGCACCT 600
consensus_5683#2 ------------------------------------------------------------
consensus_5683#1 AGAGGTGTTCCGGCCGGAGCGCTTCGACCCAAACGGCGAGGAAGAGAAGAGGAGGCACCC 100
consensus_5683#0 GGCCACCCTGATCCCCAGCATGGAGTCGTGTATTGAACGCGCGGCCGAGAATCTCGAGGG 660
consensus_5683#2 --------------------------------------------CCGAGAATCTCGAGGG 16
consensus_5683#1 GTACGCGCTCTTCCCGTTCGGGATAGGGCCGAGGGCGTGCATCGGCCAGAAGTTC---GC 157
* **** ** *
consensus_5683#0 CCAAGAGGAGATCAACTTCTCCAAGCTCT-CTCTCAGCTTCACCACTGACGTCCTCGGGC 719
consensus_5683#2 CCAAGAGGAGATCAACTTCTCCAAGCTCT-CTCTCAGCTTCACCACTGACGTCCTCGGGC 75
consensus_5683#1 CATACAGGAGATGAAATTGTCAGCGATCCACTTCTACCGTCATTACGTATTTCGGCCCTC 217
* * ******* ** ** ** * ** ** * * *** ** * ** * *
consensus_5683#0 AGGCAGCGTTCGGAACGGACTTTGGCCTGTCGAAAAAGTTGGCCTCGTCGGACGACGACG 779
consensus_5683#2 AGGCAGCGTTCGGAACGGACTTTGGCCTGTCGAAAAAGTTGGCCTCGTCGGACGACGACG 135
consensus_5683#1 GCCCAGCATGGAGTCTCCTCCTGAGTTTGT-GTACTCGATCGTCTCCAATTTCAAGAACG 276
**** * * * * * *** * * * * * *** * * ***
consensus_5683#0 AGGACACCCGCAAGATCGCGGCCGATACCTGCGCGGAGGCCAAG-GCATCAT-CGGAGTT 837
consensus_5683#2 AGGACACCCGCAAGATCGCGGCCGATACCTGCGCGGAGGCCAAG-GCATCATTCGGAGTT 194
consensus_5683#1 GCGCCAAGCTTCAGGTCATCAA-GAGGCATATATAATGCTTAATCACATCATCAGGAGAA 335
* ** * ** ** ** * * * ** ****** ****
consensus_5683#0 CATCAA-GATGCACGTGCACGCGACCACGTCTCTAAAAATGGACATGTCCGGCTCGCTCT 896
consensus_5683#2 CATCAAAGATGCACGTGCACGCGACCACGTCTTTAAAAATGGACATGTCCGGCTCGCTCT 254
consensus_5683#1 CTATTCGTTTGGATTTTGGGTATTGCGCATATTATTAAGTACTCGTTTTCAGTTTATGTT 395
* ** * * * * * * ** * * * * * * * *
consensus_5683#0 CCATCAT---------CGTCGGCCAGCTCCTGCCGTTCC-------TCCATGAACCGTT- 939
consensus_5683#2 CCATCAT--------TCGTCGGNCAGCTCCTGCCGTTCC-------TTCATGAACCGTT- 298
consensus_5683#1 GTACTGTACTTGTTTTCGCCGGGCAGTCCGTGTTGTACTCGTAATATATATGAACCACAG 455
* * ** *** *** * ** ** * * *******
consensus_5683#0 CCGGCAGGTTCTC------AAGAGGCTT-CGCT--GGACGG-CGGACCAC--GAGATCGA 987
consensus_5683#2 CCGGGAGGTTTCTTCA--AAGAAGGCTTTCGCTTGGGACGGGCGGACCANCGAAGATCGA 356
consensus_5683#1 CTAGCAAATCTCCGAGGCATAAAGTNTCTTATGAGTAAATATCCGAATATAAGATNTTTC 515
* * * * ** * * * ** * * *
consensus_5683#0 CCG-CGTGAA--CC-TCACG--CTCGGGAGA-CAGCTT-GACAGGA--TCGTCGCCGAGC 1037
consensus_5683#2 ACGGNGTGAA--CCCTCACCGCTTCGGGAGAACAGCTTTGACAGGGATTCGTCGNCGAAC 414
consensus_5683#1 TTCTCATAAAGACCTCTATAGGTAGAGGAGCAGGCCGTGGGACATATCATGTGGTACGAT 575
* ** ** * **** * * * ** *
consensus_5683#0 -GGACGG-CTGCAATGAAGCGAGACCGGCGGCGCTGCAGCAGCGCAAGGACTTCCTGTCC 1095
consensus_5683#2 CGGACGGGTTGNAATG-------------------------------------------- 430
consensus_5683#1 GAAAATAGATCTAATAAAGACCAGTATGATGTTCGCGTTAAAANAAAAAAA--------- 626
* * ***
consensus_5683#0 GTCATGCTCACGGCGAGAGAGTCGAACAAATCCTCGAGGGAGCTGCTCACGCCGGACTAC 1155
consensus_5683#2 ------------------------------------------------------------
consensus_5683#1 ------------------------------------------------------------
consensus_5683#0 ATCAGCGCGCTCACTTACGAGCACCTCCTCGCCGGGTCGGCCACGACGGCGTTCACTCTC 1215
consensus_5683#2 ------------------------------------------------------------
consensus_5683#1 ------------------------------------------------------------
consensus_5683#0 ACCACGGCGCTCTACCTCGTCGCCAAGCACCCGGAGGTGGAGGAGAAGCTGCTCAGAGAG 1275
consensus_5683#2 ------------------------------------------------------------
consensus_5683#1 ------------------------------------------------------------
consensus_5683#0 ATCGACGGGTTCGGACCCCGCGACCGCGTGCCGACGGCCGAGGATCTGCAGACCAAATTC 1335
consensus_5683#2 ------------------------------------------------------------
consensus_5683#1 ------------------------------------------------------------
consensus_5683#0 CCCTACCTTGATCAGGTCCTGAAGGAAGCGATGAGATATTACCCCTCATCGCCATTGATA 1395
consensus_5683#2 ------------------------------------------------------------
consensus_5683#1 ------------------------------------------------------------
consensus_5683#0 GCAAGGGAACTGAACCAACAGCTCGAAATTGGAGGATATCCCCTTCCAAAGGGAACATGG 1455
consensus_5683#2 ------------------------------------------------------------
consensus_5683#1 ------------------------------------------------------------
consensus_5683#0 GTGTGGATGGCACCTGGTGTCCTAGGAAAGGATCCCAAAAATTTCCCAGAGCCAGAGGTG 1515
consensus_5683#2 ------------------------------------------------------------
consensus_5683#1 ------------------------------------------------------------
consensus_5683#0 TTCCGGCCGGAGCGCTTCGACCCAAACGGCGAGGAAGAGAAGAGGAGGCACCCGTACGCG 1575
consensus_5683#2 ------------------------------------------------------------
consensus_5683#1 ------------------------------------------------------------
consensus_5683#0 CTCTTCCCGTTCGGGATAGGGCCGAGGGCGTGCATCGGCCAGAAGTTCGCCATACAGGAG 1635
consensus_5683#2 ------------------------------------------------------------
consensus_5683#1 ------------------------------------------------------------
consensus_5683#0 ATGAAATTGTCAGCGATCCACTTCTACCGTCATTACGTATTTCGGCCCTCGCCCAGCATG 1695
consensus_5683#2 ------------------------------------------------------------
consensus_5683#1 ------------------------------------------------------------
consensus_5683#0 GAGTCTCCTCCTGAGTTTGTGTACTCGATCGTCTCCAATTTCAAGAACGGCGCCAAGCTT 1755
consensus_5683#2 ------------------------------------------------------------
consensus_5683#1 ------------------------------------------------------------
consensus_5683#0 CAGGTCATCAAGAGGCATATATAATGCTTAATCACATCATCAGGAGAACTATTCGTTTGG 1815
consensus_5683#2 ------------------------------------------------------------
consensus_5683#1 ------------------------------------------------------------
consensus_5683#0 ATTTTGGGTATTGCGCATATTATTAAGTACTCGTTTTCAGTTTATGTTGTACTGTACTTG 1875
consensus_5683#2 ------------------------------------------------------------
consensus_5683#1 ------------------------------------------------------------
consensus_5683#0 TTTTCGCCGGGCAGTCCGTGTTGTACTCGTAATATATATGAAC 1918
consensus_5683#2 -------------------------------------------
consensus_5683#1 -------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||