These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5684#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1918 fasta sequence [TCCTCCTCCCAACCCCTCCCCGACGCCACCATGCGCCCCTTCCACCCTCCCCGCCCCAACGCCGGCCAACCCCACCGCCCGCGCCCCGGCGACCCCGCCCCGCCTCCCCTCCCCATGCACCCGGGCTTCAACCCTCCGCCCGTCCCCAACCTCGCCGCCGCCAACCCCATGGCCGCCGCGGCGGCGGCCAACCCTTTCCTCGCGATGCAGCTCTTCGGCCAGGCGCAGCAGCTCCAGAGCCTCGGCTTCCTCGCCGCCGCCGCGCTCCAGCAGCACCATCACCAGCCGCAGCCGCAGGCCCCCTTCTTCCCCGGGGGAGGTTTCCCGCCGAACCCCAACCAGTTCGGGGCCTTCCCTGTCCAGCACGCCGGGTTCAACGGCGGCGGGGCGTTTCGACCTGGTGGCGTGGGCGTGGGCGTGGCCGGCCCCCGTACTCCCCGCCCGATGATGGGCGCCCCTGGTAATGGTTACAACAGCGGTGGCGGCAGCGGCCATGGTACCGGAGCTGGTGCGCCGAGACCCATGCTGAATGGTGGGGGGAACGATCGGAATAGCAGTGCTGGGAAGGGCGGTGAGGTAAACCACACTAAGATCAAGCCAGATGGCATCCCTCGTTTTACCTCTGAAAATGGTGAGAGGAAAAATACAACAGATCAGAAAGCCCGATTCAACTCTGGAAGAGATTGTAGGGATAGCAGGCAATTTGGCCCATCTGGTGGAAGGGGAAGGGGAAGGGGAAGGTCTTTCAATCAAGGTCGTGGAGGAGGAAACAACAACTGGAGAGATGCAAAATCCAACTTCAGAAGCAGTGACAGTCCAAGTCCAGCATCAGGACAACGCCGCAATGACAGTCCAGCATCTGGAGGACACCGGAAGCGGCCTCGTATAATTTATGATGCAAACGAAGTTAAACAGTGGCTTGAAGCACGCAAGAAGAACTATCCTACAAGTGTCAACATAAATAAGAAGTTGTCTGAGAGTCGACCAGATGGTGAGAAGAAGGATGAAGAGGCCCAAATGCGCCGTCAGGAACTCAAGGAAGTATTAGAAAAACAGAAAGAATTGGGTTTTGAACTCCCTGAACTACCACCTGGCTATCTATCTGAACATGAGGATCAAGGCAATGGTAGGAGAAGTAACTGGAAAACACAACGCAGGGATTGTCGTTTTGGAAACCGTGCTGATAACAAAAGATCAAGGTATGACCGCAATGATTTTCAGTCTAAGAGACCCAAGGTACGGAACCAAACTCATTGTGATGATGGGGCAGTGCTCAAGAGCAGGGAGCCAACCCTCTTGCAGAAACTTCTTAGTTCGGATGTCAAGAGGGACAGGCATAGGCTTCTCCACACGTTCAAATTCATGGTCCTTAACAATTTCTTCAGTGATTATCCTGATAAGCCCTTGGAGTTTCCTAGTGTTAAAGTAAACCAGATCGAACTTGAAAGCAACATTGCTGAAGAGGACCTAGATGACTTGATGAACAGCGAGACGGCAAAG-GACAGCATCCTTGATTTGAAGGAAAATGGTGATCAGAAAGACTCGAGCTCAATTGATGGAGAATCAGACCTCGATGACGACAATGATGATGAAGATGAAGAAGATGATGATGATGGCAATGG-CAGTGCTGAGAGCAGCGACAAGGATGAGAACGAGGACGTCGATGCAGGGCAGATGTAATACGCCGTTTTTTTAAAACATGATGGAAGTAAACGACTCCAGACGTCTACACCCAAAGGTATACTCAACCAAAATGTAATGCACCTGAAGTCAGAGGTGCAAGTATCCAGCAGGGCACAGGCCAACTGTGTTTTTGGTGTATAGTTGGCGTTCACAAATGATATTTATGTAGCTGCCTTTGAAATTTTGTTATCAGTTGCATTTGCTATTATGTGTTTTGCTGTTTGGAGAAAAAAAA] [+] EMBL AK073886 [TCCTCCTCCCAACCCCTCCCCGACGCCACCATGCGCCCCTTCCACCCTCCCCGCCCCAACGCCGGCCAACCCCACCGCCCGCGCCCCGGCGACCCCGCCCCGCCTCCCCTCCCCATGCACCCGGGCTTCAACCCTCCGCCCGTCCCCAACCTCGCCGCCGCCAACCCCATGGCCGCCGCGGCGGCGGCCAACCCTTTCCTCGCGATGCAGCTCTTCGGCCAGGCGCAGCAGCTCCAGAGCCTCGGCTTCCTCGCCGCCGCCGCGCTCCAGCAGCACCATCACCAGCCGCAGCCGCAGGCCCCCTTCTTCCCCGGGGGAGGTTTCCCGCCGAACCCCAACCAGTTCGGGGCCTTCCCTGTCCAGCACGCCGGGTTCAACGGCGGCGGGGCGTTTCGACCTGGTGGCGTGGGCGTGGGCGTGGCCGGCCCCCGTACTCCCCGCCCGATGATGGGCGCCCCTGGTAATGGTTACAACAGCGGTGGCGGCAGCGGCCATGGTACCGGAGCTGGTGCGCCGAGACCCATGCTGAATGGTGGGGGGAACGATCGGAATAGCAGTGCTGGGAAGGGCGGTGAGGTAAACCACACTAAGATCAAGCCAGATGGCATCCCTCGTTTTACCTCTGAAAATGGTGAGAGGAAAAATACAACAGATCAGAAAGCCCGATTCAACTCTGGAAGAGATTGTAGGGATAGCAGGCAATTTGGCCCATCTGGTGGAAGGGGAAGGGGAAGGGGAAGGTCTTTCAATCAAGGTCGTGGAGGAGGAAACAACAACTGGAGAGATGCAAAATCCAACTTCAGAAGCAGTGACAGTCCAAGTCCAGCATCAGGACAACGCCGCAATGACAGTCCAGCATCTGGAGGACACCGGAAGCGGCCTCGTATAATTTATGATGCAAACGAAGTTAAACAGTGGCTTGAAGCACGCAAGAAGAACTATCCTACAAGTGTCAACATAAATAAGAAGTTGTCTGAGAGTCGACCAGATGGTGAGAAGAAGGATGAAGAGGCCCAAATGCGCCGTCAGGAACTCAAGGAAGTATTAGAAAAACAGAAAGAATTGGGTTTTGAACTCCCTGAACTACCACCTGGCTATCTATCTGAACATGAGGATCAAGGCAATGGTAGGAGAAGTAACTGGAAAACACAACGCAGGGATTGTCGTTTTGGAAACCGTGCTGATAACAAAAGATCAAGGTATGACCGCAATGATTTTCAGTCTAAGAGACCCAAGGTACGGAACCAAACTCATTGTGATGATGGGGCAGTGCTCAAGAGCAGGGAGCCAACCCTCTTGCAGAAACTTCTTAGTTCGGATGTCAAGAGGGACAGGCATAGGCTTCTCCACACGTTCAAATTCATGGTCCTTAACAATTTCTTCAGTGATTATCCTGATAAGCCCTTGGAGTTTCCTAGTGTTAAAGTAAACCAGATCGAACTTGAAAGCAACATTGCTGAAGAGGACCTAGATGACTTGATGAACAGCGAGACGGCAAAG GACAGCATCCTTGATTTGAAGGAAAATGGTGATCAGAAAGACTCGAGCTCAATTGATGGAGAATCAGACCTCGATGACGACAATGATGATGAAGATGAAGAAGATGATGATGATGGCAATGG CAGTGCTGAGAGCAGCGACAAGGATGAGAACGAGGACGTCGATGCAGGGCAGATGTAATACGCCGTTTTTTTAAAACATGATGGAAGTAAACGACTCCAGACGTCTACACCCAAAGGTATACTCAACCAAAATGTAATGCACCTGAAGTCAGAGGTGCAAGTATCCAGCAGGGCACAGGCCAACTGTGTTTTTGGTGTATAGTTGGCGTTCACAAATGATATTTATGTAGCTGCCTTTGAAATTTTGTTATCAG ] [+] EMBL BI812728 [ GAAAGCAACATTGCTGAAGAGGACCTAGATGACTTGATGAACAGCGAGACGGCAAAGTGACAGCATCCTTGATTTGAAGGAAAATGGTGATCAGAAAGACTCGAGCTCAATTGATGGAGAATCAGACCTCGATGACGACCATGATGATGAAGATGAAGAAGATGATGATGATGGCAATGGCCAGTGCTGAGAGCAGCGACAAGGATGAG ACGAGGACGTCGATGCAGGGCAGATGTAATAC CCGTTTTTTT AAACATGATGGAAGTAAACGACTCCAGACGTCTACACCCAAAGGTATACTCAACCAAAATGTAATGCACCTGAAGTCAGAGGTGCAAGTATCCAGCAGGGCACAGGCCAACTGTGTTTTTGGTGTATAGTTGGCGTTCACAAATGATATTTATGTAGCTGCCTTTGAAATTTTGTTATCAGTTGCATTTGCTATTATGTGTTTTGCTGTTTGGAGAAAAAAAA] consensusID : consensus_5684#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 153 fasta sequence [TGATGGAAGTAAACGACTCCAGACGTGCTACACCCAAGGTATACTGCAACCCAAATGTAATGGCACCTGAAGTCCAGAGGTGCAAGTATCCAGCAGGGCACAGCCAACTGTGTTTTTGTGTATATTGGCGTTGCACAATGATGATTTAGTACT] [+] EMBL BI805569 [TGATGGAAGTAAACGACTCCAGACGTGCTACACCCAAGGTATACTGCAACCCAAATGTAATGGCACCTGAAGTCCAGAGGTGCAAGTATCCAGCAGGGCACAGCCAACTGTGTTTTTGTGTATATTGGCGTTGCACAATGATGATTTAGTACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5684#0 TCCTCCTCCCAACCCCTCCCCGACGCCACCATGCGCCCCTTCCACCCTCCCCGCCCCAAC 60 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 GCCGGCCAACCCCACCGCCCGCGCCCCGGCGACCCCGCCCCGCCTCCCCTCCCCATGCAC 120 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 CCGGGCTTCAACCCTCCGCCCGTCCCCAACCTCGCCGCCGCCAACCCCATGGCCGCCGCG 180 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 GCGGCGGCCAACCCTTTCCTCGCGATGCAGCTCTTCGGCCAGGCGCAGCAGCTCCAGAGC 240 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 CTCGGCTTCCTCGCCGCCGCCGCGCTCCAGCAGCACCATCACCAGCCGCAGCCGCAGGCC 300 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 CCCTTCTTCCCCGGGGGAGGTTTCCCGCCGAACCCCAACCAGTTCGGGGCCTTCCCTGTC 360 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 CAGCACGCCGGGTTCAACGGCGGCGGGGCGTTTCGACCTGGTGGCGTGGGCGTGGGCGTG 420 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 GCCGGCCCCCGTACTCCCCGCCCGATGATGGGCGCCCCTGGTAATGGTTACAACAGCGGT 480 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 GGCGGCAGCGGCCATGGTACCGGAGCTGGTGCGCCGAGACCCATGCTGAATGGTGGGGGG 540 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 AACGATCGGAATAGCAGTGCTGGGAAGGGCGGTGAGGTAAACCACACTAAGATCAAGCCA 600 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 GATGGCATCCCTCGTTTTACCTCTGAAAATGGTGAGAGGAAAAATACAACAGATCAGAAA 660 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 GCCCGATTCAACTCTGGAAGAGATTGTAGGGATAGCAGGCAATTTGGCCCATCTGGTGGA 720 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 AGGGGAAGGGGAAGGGGAAGGTCTTTCAATCAAGGTCGTGGAGGAGGAAACAACAACTGG 780 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 AGAGATGCAAAATCCAACTTCAGAAGCAGTGACAGTCCAAGTCCAGCATCAGGACAACGC 840 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 CGCAATGACAGTCCAGCATCTGGAGGACACCGGAAGCGGCCTCGTATAATTTATGATGCA 900 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 AACGAAGTTAAACAGTGGCTTGAAGCACGCAAGAAGAACTATCCTACAAGTGTCAACATA 960 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 AATAAGAAGTTGTCTGAGAGTCGACCAGATGGTGAGAAGAAGGATGAAGAGGCCCAAATG 1020 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 CGCCGTCAGGAACTCAAGGAAGTATTAGAAAAACAGAAAGAATTGGGTTTTGAACTCCCT 1080 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 GAACTACCACCTGGCTATCTATCTGAACATGAGGATCAAGGCAATGGTAGGAGAAGTAAC 1140 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 TGGAAAACACAACGCAGGGATTGTCGTTTTGGAAACCGTGCTGATAACAAAAGATCAAGG 1200 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 TATGACCGCAATGATTTTCAGTCTAAGAGACCCAAGGTACGGAACCAAACTCATTGTGAT 1260 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 GATGGGGCAGTGCTCAAGAGCAGGGAGCCAACCCTCTTGCAGAAACTTCTTAGTTCGGAT 1320 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 GTCAAGAGGGACAGGCATAGGCTTCTCCACACGTTCAAATTCATGGTCCTTAACAATTTC 1380 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 TTCAGTGATTATCCTGATAAGCCCTTGGAGTTTCCTAGTGTTAAAGTAAACCAGATCGAA 1440 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 CTTGAAAGCAACATTGCTGAAGAGGACCTAGATGACTTGATGAACAGCGAGACGGCAAAG 1500 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 GACAGCATCCTTGATTTGAAGGAAAATGGTGATCAGAAAGACTCGAGCTCAATTGATGGA 1560 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 GAATCAGACCTCGATGACGACAATGATGATGAAGATGAAGAAGATGATGATGATGGCAAT 1620 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 GGCAGTGCTGAGAGCAGCGACAAGGATGAGAACGAGGACGTCGATGCAGGGCAGATGTAA 1680 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 TACGCCGTTTTTTTAAAACATGATGGAAGTAAACGACTCCAGACGT-CTACACCCAAAGG 1739 consensus_5684#1 --------------------TGATGGAAGTAAACGACTCCAGACGTGCTACACCCAA-GG 39 ************************** ********** ** consensus_5684#0 TATACT-CAACCAAAATGTAATG-CACCTGAAGTC-AGAGGTGCAAGTATCCAGCAGGGC 1796 consensus_5684#1 TATACTGCAACCCAAATGTAATGGCACCTGAAGTCCAGAGGTGCAAGTATCCAGCAGGGC 99 ****** ***** ********** *********** ************************ consensus_5684#0 ACAGGCCAACTGTGTTTTTGGTGTATAGTTGGCGTTCACAAATGATATTTATGTAGCTGC 1856 consensus_5684#1 ACAG-CCAACTGTGTTTTTG-TGTATA-TTGGCGTTGCACAATGATGATTTAGTACT--- 153 **** *************** ****** ******** ****** ** *** consensus_5684#0 CTTTGAAATTTTGTTATCAGTTGCATTTGCTATTATGTGTTTTGCTGTTTGGAGAAAAAA 1916 consensus_5684#1 ------------------------------------------------------------ consensus_5684#0 AA 1918 consensus_5684#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||