These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5686#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1812 fasta sequence [TTATTATATTTGAATTTTAGGTGAATATTCCATGCATCTTTTACGTATGGTCTCTCCACTTCCGTTGAATACCGCAACACTTTCTGACCTTATTCTCAAATAAAACTTCATTCAGCCCTGTTTAAGCTTTAATTGGACCAATTGAAATGAAGAATTTCCAATTTCCGACAGAGATCTGTCGAGTGCACAAAGATTGTGTATCCTTATCGTGTCCACAATCAAGAACTAATAATTGTAATTGGTGAAGGGTTAGTAGGCCAGCTCCTAATTTTCTTATCAGAGTCAACATTAGCATCCACAGGCACTTTTGTTCATGCCATGTGTTCTTCCCTCACAATCTCCTTATGATTGATTTGTCCACGGGAGAATTGCCATCACTTCGGTTCTTGCTTCATTTCTTCTCTGGGTAATGGAATAAGGTGTGAGTGAAACACCTCACATGATGCCTTTCTTCTCCCTCCACTTGAGAAAGCAAATTGTTCCTGTAATTTGAAATCGGCCGGCTTGCTGAGTTGCTGACTGTGCTGGTAATTACCGGCAGCATGCTTTGCTCCTAGCATTATTGATTATCTTGTTTTTTTTTTTTTTTTCCACATCACATAAATGAAACAGTGTTGGGAGTTAAATTTACTAGCACAGGAGCCAACTAATCTTGTACCAGGCACATTCATCAGAATTATATATATGCAGGCTTAGGCTACACAAAAGCTTGTACTAAACAGTACTACTAGTTAGACTTGTCATCATAGTGAAGTTAACAAAGTTATCACTTATCAGTGCATCGTACTTGGCATTAGCGGCCGACAGAGAATCCGCCAGCCACACTCCCCACCTCTAGGGGAGGGGAGTGACAGTCAAGTATCCCTTCATTCTCCCTCTACAATGCAGCTCATGCATAGCCTTTTGATGGAAAAGCAGAAATTCCAGAGAGGCAGCAAGAGCATACCATTTTGATTAGCTCACCACTGGCTCTCCTGGTTGCCCTAAAGTAAGAAGTAGTGTAGTACACTTTTGTAGTTTTGTTGCTAATCTATTCGGCTAATTCCTACTATATTGATTTTGGAATCTTGTGTTCTTTGGATTTACTTACCTTTGTATTCCTGCAAGGGTCAAGTGCTCAGGGGCGGATCTACAGTATAAGCGTCAGTGTCAAGCGACACCGATGACTTTCGGCAAAACCTATAACAAAACTGCTTATCCATATACTATAACACTATGTTCTAAGTATAATTAGCATACTATGACACCGACAGACACGTTATGACACCAACAAACTGATTTTCTGGATCCGCCACTGCAAGTGCTGACAGAGTTATTGCAGACTCGCAGTCCGTCTTCAGTTGCAAACAGTTTGGAGGGTAGTTCTTGGTCGTCCATTACTTCACTGAAGATTCCGAAATCCAACAAAATTCAGGCCGTTCTTCAGAAAGAAGCAAGCACTGCAGAGCTGAACTCTGCTTCATTGGATGGTCAAAAAGGAAGGCTGCTGAAGATTGGCTGCATTTGGGCTCTTAGGAATCGATATGTGCCTGCAGAAAGATCGGTCAAGATTATTCCTCACGGTTAATGCTGCACTGGCTGTTCATTTGGTTAAATTTTGCTTGATAGCAGTAGGATGTTTAGAGCTGCCAGCTTCAGGCTTCCGTAGTGCCGTGTTCAAGAAATCAGTGTGTTGATTCTATGACTGAAATAGTTTGCAAGACATGGATAGTATATAGAGAAAATGTCGCTGCTTTTGCCAATCGCATCATCAAGGCAGCAAAGCTATTCCACTATCTTGATTCTATGACAGTTGAAAGAGATATAAGCATC] [+] EMBL AK064529 [TTATTATATTTGAATTTTAGGTGAATATTCCATGCATCTTTTACGTATGGTCTCTCCACTTCCGTTGAATACCGCAACACTTTCTGACCTTATTCTCAAATAAAACTTCATTCAGCCCTGTTTAAGCTTTAATTGGACCAATTGAAATGAAGAATTTCCAATTTCCGACAGAGATCTGTCGAGTGCACAAAGATTGTGTATCCTTATCGTGTCCACAATCAAGAACTAATAATTGTAATTGGTGAAGGGTTAGTAGGCCAGCTCCTAATTTTCTTATCAGAGTCAACATTAGCATCCACAGGCACTTTTGTTCATGCCATGTGTTCTTCCCTCACAATCTCCTTATGATTGATTTGTCCACGGGAGAATTGCCATCACTTCGGTTCTTGCTTCATTTCTTCTCTGGGTAATGGAATAAGGTGTGAGTGAAACACCTCACATGATGCCTTTCTTCTCCCTCCACTTGAGAAAGCAAATTGTTCCTGTAATTTGAAATCGGCCGGCTTGCTGAGTTGCTGACTGTGCTGGTAATTACCGGCAGCATGCTTTGCTCCTAGCATTATTGATTATCTTGTTTTTTTTTTTTTTTTCCACATCACATAAATGAAACAGTGTTGGGAGTTAAATTTACTAGCACAGGAGCCAACTAATCTTGTACCAGGCACATTCATCAGAATTATATATATGCAGGCTTAGGCTACACAAAAGCTTGTACTAAACAGTACTACTAGTTAGACTTGTCATCATAGTGAAGTTAACAAAGTTATCACTTATCAGTGCATCGTACTTGGCATTAGCGGCCGACAGAGAATCCGCCAGCCACACTCCCCACCTCTAGGGGAGGGGAGTGACAGTCAAGTATCCCTTCATTCTCCCTCTACAATGCAGCTCATGCATAGCCTTTTGATGGAAAAGCAGAAATTCCAGAGAGGCAGCAAGAGCATACCATTTTGATTAGCTCACCACTGGCTCTCCTGGTTGCCCTAAAGTAAGAAGTAGTGTAGTACACTTTTGTAGTTTTGTTGCTAATCTATTCGGCTAATTCCTACTATATTGATTTTGGAATCTTGTGTTCTTTGGATTTACTTACCTTTGTATTCCTGCAAGGGTCAAGTGCTCAGGGGCGGATCTACAGTATAAGCGTCAGTGTCAAGCGACACCGATGACTTTCGGCAAAACCTATAACAAAACTGCTTATCCATATACTATAACACTATGTTCTAAGTATAATTAGCATACTATGACACCGACAGACACGTTATGACACCAACAAACTGATTTTCTGGATCCGCCACTGCAAGTGCTGACAGAGTTATTGCAGACTCGCAGTCCGTCTTCAGTTGCAAACAGTTTGGAGGGTAGTTCTTGGTCGTCCATTACTTCACTGAAGATTCCGAAATCCAACAAAATTCAGGCCGTTCTTCAGAAAGAAGCAAGCACTGCAGAGCTGAACTCTGCTTCATTGGATGGTCAAAAAGGAAGGCTGCTGAAGATTGGCTGCATTTGGGCTCTTAGGAATCGATATGTGCCTGCAGAAAGATCGGTCAAGATTATTCCTCACGGTTAATGCTGCACTGGCTGTTCATTTGGTTAAATTTTGCTTGATAGCAGTAGGATGTTTAGAGCTGCCAGCTTCAGGCTTCCGTAGTGCCGTGTTCAAGAAATCAGTGTGTTGATTCTATGACTGAAATAGTTTGCAAGACATGGATAGTATATAGAGAAAATGTCGCTGCTTTTGCCAATCGCATCATCAAGGCAGCAAAGCTATTCCACTATCTTGATTCTATGACAGTTGAAAGAGATATAAGCATC] consensusID : consensus_5686#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [GGAGTTCCCCTTTGGGCCCATCCTCTGAAATCAGGCCACCCTTTTGGTCTGGCGCCTTTCCACGTTGCAAACCCCTTGGAGGGTAGTTCGTGGTCGCACCTTCCTTCACTGAAGATTCCGAAATCCAACAGAATTCCGGCCGTTCTTTAGAAAGAAGCAAGCCGTGCAGAGCTGACCTCTGCCTCACGGGGTGCTGTTCATGCCCTTTTTAAAATTTCTTTATGGGCCACATATTTAGGCCAACTCCGGCTTTATTCCTGATGATACGCATCTGCTGCATCTGACCGGTTTCAGATGGTCAAAAAGGAAGGCTGCTGAAGATTGGCTGCATTTGGGCTCTTAGGAATCGATATGTGCCTGCAGAAAGATCGGTCAAGATTATTCCTCACGGTTAATGCTGCCCGGGCTGTTCATTTGGTTAAATTTTGCTTGATAGCAGTAGGATGTTTAGAGCTGCCAGCGTCAGGCTTCCGTAGTGCCGTGTTCAAGAAATCAGTGTGTTGATTCTATGACTGAAATAGTTTGCAAGCCATGGATAGTATATAGAGAAAATGTCGCTGCTTTTGCCAATCGCATCATCAAGGCAGCAAAGCTATTCCCCTATCTTGATTCTATGACAGTTGAAAGAGATATAAGCATCTCCGTAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA760802 [GGAGTTCCCCTTTGGGCCCATCCTCTGAAATCAGGCCACCCTTTTGGTCTGGCGCCTTTCCACGTTGCAAACCCCTTGGAGGGTAGTTCGTGGTCGCACCTTCCTTCACTGAAGATTCCGAAATCCAACAGAATTCCGGCCGTTCTTTAGAAAGAAGCAAGCCGTGCAGAGCTGACCTCTGCCTCACGGGGTGCTGTTCATGCCCTTTTTAAAATTTCTTTATGGGCCACATATTTAGGCCAACTCCGGCTTTATTCCTGATGATACGCATCTGCTGCATCTGACCGGTTTCAGATGGTCAAAAAGGAAGGCTGCTGAAGATTGGCTGCATTTGGGCTCTTAGGAATCGATATGTGCCTGCAGAAAGATCGGTCAAGATTATTCCTCACGGTTAATGCTGCCCGGGCTGTTCATTTGGTTAAATTTTGCTTGATAGCAGTAGGATGTTTAGAGCTGCCAGCGTCAGGCTTCCGTAGTGCCGTGTTCAAGAAATCAGTGTGTTGATTCTATGACTGAAATAGTTTGCAAGCCATGGATAGTATATAGAGAAAATGTCGCTGCTTTTGCCAATCGCATCATCAAGGCAGCAAAGCTATTCCCCTATCTTGATTCTATGACAGTTGAAAGAGATATAAGCATCTCCGTAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_5686#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence [AGGCAGCCGGTTGGTGGGGAAAAGATGGTCAAAAAGGAAGGCTGCTGAAGATTGGCTGCATTTGGGCTCTTAGGAATCGATATGTGCCTGCAGAAAGATCGGTCAAGATTATTCCTCACGGTTAATGCTGCACTGGCTGTTCATTTGGTTAAATTTTGCTTGATAGCAGTAGGATGTTTAGAGCTGCCAGCTTCAGGCTTCCGTAGTGCCGTGTTCAAGAAATCAGTGTGTTGATTCTATGACTGAAATAGTTTGCAAGACATGGATAGTATATAGAGAAA] [+] EMBL AU176449 [AGGCAGCCGGTTGGTGGGGAAAAGATGGTCAAAAAGGAAGGCTGCTGAAGATTGGCTGCATTTGGGCTCTTAGGAATCGATATGTGCCTGCAGAAAGATCGGTCAAGATTATTCCTCACGGTTAATGCTGCACTGGCTGTTCATTTGGTTAAATTTTGCTTGATAGCAGTAGGATGTTTAGAGCTGCCAGCTTCAGGCTTCCGTAGTGCCGTGTTCAAGAAATCAGTGTGTTGATTCTATGACTGAAATAGTTTGCAAGACATGGATAGTATATAGAGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5686#0 TTATTATATTTGAATTTTAGGTGAATATTCCATGCATCTTTTACGTATGGTCTCTCCACT 60 consensus_5686#2 ------------------------------------------------------------ consensus_5686#1 ------------------------------------------------------------ consensus_5686#0 TCCGTTGAATACCGCAACACTTTCTGACCTTATTCTCAAATAAAACTTCATTCAGCCCTG 120 consensus_5686#2 ------------------------------------------------------------ consensus_5686#1 ------------------------------------------------------------ consensus_5686#0 TTTAAGCTTTAATTGGACCAATTGAAATGAAGAATTTCCAATTTCCGACAGAGATCTGTC 180 consensus_5686#2 ------------------------------------------------------------ consensus_5686#1 ------------------------------------------------------------ consensus_5686#0 GAGTGCACAAAGATTGTGTATCCTTATCGTGTCCACAATCAAGAACTAATAATTGTAATT 240 consensus_5686#2 ------------------------------------------------------------ consensus_5686#1 ------------------------------------------------------------ consensus_5686#0 GGTGAAGGGTTAGTAGGCCAGCTCCTAATTTTCTTATCAGAGTCAACATTAGCATCCACA 300 consensus_5686#2 ------------------------------------------------------------ consensus_5686#1 ------------------------------------------------------------ consensus_5686#0 GGCACTTTTGTTCATGCCATGTGTTCTTCCCTCACAATCTCCTTATGATTGATTTGTCCA 360 consensus_5686#2 ------------------------------------------------------------ consensus_5686#1 ------------------------------------------------------------ consensus_5686#0 CGGGAGAATTGCCATCACTTCGGTTCTTGCTTCATTTCTTCTCTGGGTAATGGAATAAGG 420 consensus_5686#2 ------------------------------------------------------------ consensus_5686#1 ------------------------------------------------------------ consensus_5686#0 TGTGAGTGAAACACCTCACATGATGCCTTTCTTCTCCCTCCACTTGAGAAAGCAAATTGT 480 consensus_5686#2 ------------------------------------------------------------ consensus_5686#1 ------------------------------------------------------------ consensus_5686#0 TCCTGTAATTTGAAATCGGCCGGCTTGCTGAGTTGCTGACTGTGCTGGTAATTACCGGCA 540 consensus_5686#2 ------------------------------------------------------------ consensus_5686#1 ------------------------------------------------------------ consensus_5686#0 GCATGCTTTGCTCCTAGCATTATTGATTATCTTGTTTTTTTTTTTTTTTTCCACATCACA 600 consensus_5686#2 ------------------------------------------------------------ consensus_5686#1 ------------------------------------------------------------ consensus_5686#0 TAAATGAAACAGTGTTGGGAGTTAAATTTACTAGCACAGGAGCCAACTAATCTTGTACCA 660 consensus_5686#2 ------------------------------------------------------------ consensus_5686#1 ------------------------------------------------------------ consensus_5686#0 GGCACATTCATCAGAATTATATATATGCAGGCTTAGGCTACACAAAAGCTTGTACTAAAC 720 consensus_5686#2 ------------------------------------------------------------ consensus_5686#1 ------------------------------------------------------------ consensus_5686#0 AGTACTACTAGTTAGACTTGTCATCATAGTGAAGTTAACAAAGTTATCACTTATCAGTGC 780 consensus_5686#2 ------------------------------------------------------------ consensus_5686#1 ------------------------------------------------------------ consensus_5686#0 ATCGTACTTGGCATTAGCGGCCGACAGAGAATCCGCCAGCCACACTCCCCACCTCTAGGG 840 consensus_5686#2 ------------------------------------------------------------ consensus_5686#1 ------------------------------------------------------------ consensus_5686#0 GAGGGGAGTGACAGTCAAGTATCCCTTCATTCTCCCTCTACAATGCAGCTCATGCATAGC 900 consensus_5686#2 ------------------------------------------------------------ consensus_5686#1 ------------------------------------------------------------ consensus_5686#0 CTTTTGATGGAAAAGCAGAAATTCCAGAGAGGCAGCAAGAGCATACCATTTTGATTAGCT 960 consensus_5686#2 ------------------------------------------------------------ consensus_5686#1 ------------------------------------------------------------ consensus_5686#0 CACCACTGGCTCTCCTGGTTGCCCTAAAGTAAGAAGTAGTGTAGTACACTTTTGTAGTTT 1020 consensus_5686#2 ------------------------------------------------------------ consensus_5686#1 ------------------------------------------------------------ consensus_5686#0 TGTTGCTAATCTATTCGGCTAATTCCTACTATATTGATTTTGGAATCTTGTGTTCTTTGG 1080 consensus_5686#2 ------------------------------------------------------------ consensus_5686#1 ------------------------------------------------------------ consensus_5686#0 ATTTACTTACCTTTGTATTCCTGCAAGGGTCAAGTGCTCAGGGGCGGATCTACAGTATAA 1140 consensus_5686#2 ------------------------------------------------------------ consensus_5686#1 ------------------------------------------------------------ consensus_5686#0 GCGTCAGTGTCAAGCGACACCGATGACTTTCGGCAAAACCTATAACAAAACTGCTTATCC 1200 consensus_5686#2 ------------------------------------------------------------ consensus_5686#1 ------------GGAGTTCCC-----CTTTGGGCCCATCCTCTG--AAATCAGGCCACCC 41 consensus_5686#0 ATATACTATAACACTATGTTCTAAGTATAATTAGCATACTATGACACCGACAGACACGTT 1260 consensus_5686#2 ------------------------------------------------------------ consensus_5686#1 TTTTGGTCTGGCGCC-TTTCCACGTTGCAAACCCCTTGGAGGGTAGTTCGTGGTCGCACC 100 consensus_5686#0 ATGACACCAACAAACTGATTTTCTGGATCCGCCACTGCAAGTGCTGACAGAGTTATTGCA 1320 consensus_5686#2 ------------------------------------------------------------ consensus_5686#1 TTC-CTTCACTGAA---GATTCCGAAATCCAACA----GAATTCCGGCCGT-TCTTTAGA 151 consensus_5686#0 GACTCGCAGTCCGTCTTCAGTTGCAAACAGTTT---GGAGGGTAGTTCTTGGTCGTCCAT 1377 consensus_5686#2 ------------------------------------------------------------ consensus_5686#1 AAGAAGCAAGCCGTGCAGAGCTGACCTCTGCCTCACGGGGTGCTGTTCATGCCCTTTTTA 211 consensus_5686#0 TACTTCACTGAAGATTCCGAAATCCAACAAAATTCAGGCCGTTCTTCAGA-AAGAAGCAA 1436 consensus_5686#2 ------------------------------------------------------------ consensus_5686#1 AAATTTCTTTATGGGCCACATATTTAGGCCAACTCCGGCTTTATTCCTGATGATACGCAT 271 consensus_5686#0 GCACTGCAGAGCTGAACTCTGCTTCATTGGATGGTCAAAAAGGAAGGCTGCTGAAGATTG 1496 consensus_5686#2 -----AGGCAGCCGGTTGGTGGGGAAA-AGATGGTCAAAAAGGAAGGCTGCTGAAGATTG 54 consensus_5686#1 CTGCTGC--ATCTGA--CCGGTTTCA---GATGGTCAAAAAGGAAGGCTGCTGAAGATTG 324 * * * * * ******************************* consensus_5686#0 GCTGCATTTGGGCTCTTAGGAATCGATATGTGCCTGCAGAAAGATCGGTCAAGATTATTC 1556 consensus_5686#2 GCTGCATTTGGGCTCTTAGGAATCGATATGTGCCTGCAGAAAGATCGGTCAAGATTATTC 114 consensus_5686#1 GCTGCATTTGGGCTCTTAGGAATCGATATGTGCCTGCAGAAAGATCGGTCAAGATTATTC 384 ************************************************************ consensus_5686#0 CTCACGGTTAATGCTGCACTGGCTGTTCATTTGGTTAAATTTTGCTTGATAGCAGTAGGA 1616 consensus_5686#2 CTCACGGTTAATGCTGCACTGGCTGTTCATTTGGTTAAATTTTGCTTGATAGCAGTAGGA 174 consensus_5686#1 CTCACGGTTAATGCTGCCCGGGCTGTTCATTTGGTTAAATTTTGCTTGATAGCAGTAGGA 444 ***************** * **************************************** consensus_5686#0 TGTTTAGAGCTGCCAGCTTCAGGCTTCCGTAGTGCCGTGTTCAAGAAATCAGTGTGTTGA 1676 consensus_5686#2 TGTTTAGAGCTGCCAGCTTCAGGCTTCCGTAGTGCCGTGTTCAAGAAATCAGTGTGTTGA 234 consensus_5686#1 TGTTTAGAGCTGCCAGCGTCAGGCTTCCGTAGTGCCGTGTTCAAGAAATCAGTGTGTTGA 504 ***************** ****************************************** consensus_5686#0 TTCTATGACTGAAATAGTTTGCAAGACATGGATAGTATATAGAGAAAATGTCGCTGCTTT 1736 consensus_5686#2 TTCTATGACTGAAATAGTTTGCAAGACATGGATAGTATATAGAGAAA------------- 281 consensus_5686#1 TTCTATGACTGAAATAGTTTGCAAGCCATGGATAGTATATAGAGAAAATGTCGCTGCTTT 564 ************************* ********************* consensus_5686#0 TGCCAATCGCATCATCAAGGCAGCAAAGCTATTCCACTATCTTGATTCTATGACAGTTGA 1796 consensus_5686#2 ------------------------------------------------------------ consensus_5686#1 TGCCAATCGCATCATCAAGGCAGCAAAGCTATTCCCCTATCTTGATTCTATGACAGTTGA 624 consensus_5686#0 AAGAGATATAAGCATC------------------------- 1812 consensus_5686#2 ----------------------------------------- consensus_5686#1 AAGAGATATAAGCATCTCCGTAAAAAAAAAAAAAAAAAAAA 665 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||