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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5686#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1812 fasta sequence
[TTATTATATTTGAATTTTAGGTGAATATTCCATGCATCTTTTACGTATGGTCTCTCCACTTCCGTTGAATACCGCAACACTTTCTGACCTTATTCTCAAATAAAACTTCATTCAGCCCTGTTTAAGCTTTAATTGGACCAATTGAAATGAAGAATTTCCAATTTCCGACAGAGATCTGTCGAGTGCACAAAGATTGTGTATCCTTATCGTGTCCACAATCAAGAACTAATAATTGTAATTGGTGAAGGGTTAGTAGGCCAGCTCCTAATTTTCTTATCAGAGTCAACATTAGCATCCACAGGCACTTTTGTTCATGCCATGTGTTCTTCCCTCACAATCTCCTTATGATTGATTTGTCCACGGGAGAATTGCCATCACTTCGGTTCTTGCTTCATTTCTTCTCTGGGTAATGGAATAAGGTGTGAGTGAAACACCTCACATGATGCCTTTCTTCTCCCTCCACTTGAGAAAGCAAATTGTTCCTGTAATTTGAAATCGGCCGGCTTGCTGAGTTGCTGACTGTGCTGGTAATTACCGGCAGCATGCTTTGCTCCTAGCATTATTGATTATCTTGTTTTTTTTTTTTTTTTCCACATCACATAAATGAAACAGTGTTGGGAGTTAAATTTACTAGCACAGGAGCCAACTAATCTTGTACCAGGCACATTCATCAGAATTATATATATGCAGGCTTAGGCTACACAAAAGCTTGTACTAAACAGTACTACTAGTTAGACTTGTCATCATAGTGAAGTTAACAAAGTTATCACTTATCAGTGCATCGTACTTGGCATTAGCGGCCGACAGAGAATCCGCCAGCCACACTCCCCACCTCTAGGGGAGGGGAGTGACAGTCAAGTATCCCTTCATTCTCCCTCTACAATGCAGCTCATGCATAGCCTTTTGATGGAAAAGCAGAAATTCCAGAGAGGCAGCAAGAGCATACCATTTTGATTAGCTCACCACTGGCTCTCCTGGTTGCCCTAAAGTAAGAAGTAGTGTAGTACACTTTTGTAGTTTTGTTGCTAATCTATTCGGCTAATTCCTACTATATTGATTTTGGAATCTTGTGTTCTTTGGATTTACTTACCTTTGTATTCCTGCAAGGGTCAAGTGCTCAGGGGCGGATCTACAGTATAAGCGTCAGTGTCAAGCGACACCGATGACTTTCGGCAAAACCTATAACAAAACTGCTTATCCATATACTATAACACTATGTTCTAAGTATAATTAGCATACTATGACACCGACAGACACGTTATGACACCAACAAACTGATTTTCTGGATCCGCCACTGCAAGTGCTGACAGAGTTATTGCAGACTCGCAGTCCGTCTTCAGTTGCAAACAGTTTGGAGGGTAGTTCTTGGTCGTCCATTACTTCACTGAAGATTCCGAAATCCAACAAAATTCAGGCCGTTCTTCAGAAAGAAGCAAGCACTGCAGAGCTGAACTCTGCTTCATTGGATGGTCAAAAAGGAAGGCTGCTGAAGATTGGCTGCATTTGGGCTCTTAGGAATCGATATGTGCCTGCAGAAAGATCGGTCAAGATTATTCCTCACGGTTAATGCTGCACTGGCTGTTCATTTGGTTAAATTTTGCTTGATAGCAGTAGGATGTTTAGAGCTGCCAGCTTCAGGCTTCCGTAGTGCCGTGTTCAAGAAATCAGTGTGTTGATTCTATGACTGAAATAGTTTGCAAGACATGGATAGTATATAGAGAAAATGTCGCTGCTTTTGCCAATCGCATCATCAAGGCAGCAAAGCTATTCCACTATCTTGATTCTATGACAGTTGAAAGAGATATAAGCATC]
[+] EMBL AK064529 [TTATTATATTTGAATTTTAGGTGAATATTCCATGCATCTTTTACGTATGGTCTCTCCACTTCCGTTGAATACCGCAACACTTTCTGACCTTATTCTCAAATAAAACTTCATTCAGCCCTGTTTAAGCTTTAATTGGACCAATTGAAATGAAGAATTTCCAATTTCCGACAGAGATCTGTCGAGTGCACAAAGATTGTGTATCCTTATCGTGTCCACAATCAAGAACTAATAATTGTAATTGGTGAAGGGTTAGTAGGCCAGCTCCTAATTTTCTTATCAGAGTCAACATTAGCATCCACAGGCACTTTTGTTCATGCCATGTGTTCTTCCCTCACAATCTCCTTATGATTGATTTGTCCACGGGAGAATTGCCATCACTTCGGTTCTTGCTTCATTTCTTCTCTGGGTAATGGAATAAGGTGTGAGTGAAACACCTCACATGATGCCTTTCTTCTCCCTCCACTTGAGAAAGCAAATTGTTCCTGTAATTTGAAATCGGCCGGCTTGCTGAGTTGCTGACTGTGCTGGTAATTACCGGCAGCATGCTTTGCTCCTAGCATTATTGATTATCTTGTTTTTTTTTTTTTTTTCCACATCACATAAATGAAACAGTGTTGGGAGTTAAATTTACTAGCACAGGAGCCAACTAATCTTGTACCAGGCACATTCATCAGAATTATATATATGCAGGCTTAGGCTACACAAAAGCTTGTACTAAACAGTACTACTAGTTAGACTTGTCATCATAGTGAAGTTAACAAAGTTATCACTTATCAGTGCATCGTACTTGGCATTAGCGGCCGACAGAGAATCCGCCAGCCACACTCCCCACCTCTAGGGGAGGGGAGTGACAGTCAAGTATCCCTTCATTCTCCCTCTACAATGCAGCTCATGCATAGCCTTTTGATGGAAAAGCAGAAATTCCAGAGAGGCAGCAAGAGCATACCATTTTGATTAGCTCACCACTGGCTCTCCTGGTTGCCCTAAAGTAAGAAGTAGTGTAGTACACTTTTGTAGTTTTGTTGCTAATCTATTCGGCTAATTCCTACTATATTGATTTTGGAATCTTGTGTTCTTTGGATTTACTTACCTTTGTATTCCTGCAAGGGTCAAGTGCTCAGGGGCGGATCTACAGTATAAGCGTCAGTGTCAAGCGACACCGATGACTTTCGGCAAAACCTATAACAAAACTGCTTATCCATATACTATAACACTATGTTCTAAGTATAATTAGCATACTATGACACCGACAGACACGTTATGACACCAACAAACTGATTTTCTGGATCCGCCACTGCAAGTGCTGACAGAGTTATTGCAGACTCGCAGTCCGTCTTCAGTTGCAAACAGTTTGGAGGGTAGTTCTTGGTCGTCCATTACTTCACTGAAGATTCCGAAATCCAACAAAATTCAGGCCGTTCTTCAGAAAGAAGCAAGCACTGCAGAGCTGAACTCTGCTTCATTGGATGGTCAAAAAGGAAGGCTGCTGAAGATTGGCTGCATTTGGGCTCTTAGGAATCGATATGTGCCTGCAGAAAGATCGGTCAAGATTATTCCTCACGGTTAATGCTGCACTGGCTGTTCATTTGGTTAAATTTTGCTTGATAGCAGTAGGATGTTTAGAGCTGCCAGCTTCAGGCTTCCGTAGTGCCGTGTTCAAGAAATCAGTGTGTTGATTCTATGACTGAAATAGTTTGCAAGACATGGATAGTATATAGAGAAAATGTCGCTGCTTTTGCCAATCGCATCATCAAGGCAGCAAAGCTATTCCACTATCTTGATTCTATGACAGTTGAAAGAGATATAAGCATC]
consensusID : consensus_5686#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence
[GGAGTTCCCCTTTGGGCCCATCCTCTGAAATCAGGCCACCCTTTTGGTCTGGCGCCTTTCCACGTTGCAAACCCCTTGGAGGGTAGTTCGTGGTCGCACCTTCCTTCACTGAAGATTCCGAAATCCAACAGAATTCCGGCCGTTCTTTAGAAAGAAGCAAGCCGTGCAGAGCTGACCTCTGCCTCACGGGGTGCTGTTCATGCCCTTTTTAAAATTTCTTTATGGGCCACATATTTAGGCCAACTCCGGCTTTATTCCTGATGATACGCATCTGCTGCATCTGACCGGTTTCAGATGGTCAAAAAGGAAGGCTGCTGAAGATTGGCTGCATTTGGGCTCTTAGGAATCGATATGTGCCTGCAGAAAGATCGGTCAAGATTATTCCTCACGGTTAATGCTGCCCGGGCTGTTCATTTGGTTAAATTTTGCTTGATAGCAGTAGGATGTTTAGAGCTGCCAGCGTCAGGCTTCCGTAGTGCCGTGTTCAAGAAATCAGTGTGTTGATTCTATGACTGAAATAGTTTGCAAGCCATGGATAGTATATAGAGAAAATGTCGCTGCTTTTGCCAATCGCATCATCAAGGCAGCAAAGCTATTCCCCTATCTTGATTCTATGACAGTTGAAAGAGATATAAGCATCTCCGTAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA760802 [GGAGTTCCCCTTTGGGCCCATCCTCTGAAATCAGGCCACCCTTTTGGTCTGGCGCCTTTCCACGTTGCAAACCCCTTGGAGGGTAGTTCGTGGTCGCACCTTCCTTCACTGAAGATTCCGAAATCCAACAGAATTCCGGCCGTTCTTTAGAAAGAAGCAAGCCGTGCAGAGCTGACCTCTGCCTCACGGGGTGCTGTTCATGCCCTTTTTAAAATTTCTTTATGGGCCACATATTTAGGCCAACTCCGGCTTTATTCCTGATGATACGCATCTGCTGCATCTGACCGGTTTCAGATGGTCAAAAAGGAAGGCTGCTGAAGATTGGCTGCATTTGGGCTCTTAGGAATCGATATGTGCCTGCAGAAAGATCGGTCAAGATTATTCCTCACGGTTAATGCTGCCCGGGCTGTTCATTTGGTTAAATTTTGCTTGATAGCAGTAGGATGTTTAGAGCTGCCAGCGTCAGGCTTCCGTAGTGCCGTGTTCAAGAAATCAGTGTGTTGATTCTATGACTGAAATAGTTTGCAAGCCATGGATAGTATATAGAGAAAATGTCGCTGCTTTTGCCAATCGCATCATCAAGGCAGCAAAGCTATTCCCCTATCTTGATTCTATGACAGTTGAAAGAGATATAAGCATCTCCGTAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_5686#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence
[AGGCAGCCGGTTGGTGGGGAAAAGATGGTCAAAAAGGAAGGCTGCTGAAGATTGGCTGCATTTGGGCTCTTAGGAATCGATATGTGCCTGCAGAAAGATCGGTCAAGATTATTCCTCACGGTTAATGCTGCACTGGCTGTTCATTTGGTTAAATTTTGCTTGATAGCAGTAGGATGTTTAGAGCTGCCAGCTTCAGGCTTCCGTAGTGCCGTGTTCAAGAAATCAGTGTGTTGATTCTATGACTGAAATAGTTTGCAAGACATGGATAGTATATAGAGAAA]
[+] EMBL AU176449 [AGGCAGCCGGTTGGTGGGGAAAAGATGGTCAAAAAGGAAGGCTGCTGAAGATTGGCTGCATTTGGGCTCTTAGGAATCGATATGTGCCTGCAGAAAGATCGGTCAAGATTATTCCTCACGGTTAATGCTGCACTGGCTGTTCATTTGGTTAAATTTTGCTTGATAGCAGTAGGATGTTTAGAGCTGCCAGCTTCAGGCTTCCGTAGTGCCGTGTTCAAGAAATCAGTGTGTTGATTCTATGACTGAAATAGTTTGCAAGACATGGATAGTATATAGAGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5686#0 TTATTATATTTGAATTTTAGGTGAATATTCCATGCATCTTTTACGTATGGTCTCTCCACT 60
consensus_5686#2 ------------------------------------------------------------
consensus_5686#1 ------------------------------------------------------------
consensus_5686#0 TCCGTTGAATACCGCAACACTTTCTGACCTTATTCTCAAATAAAACTTCATTCAGCCCTG 120
consensus_5686#2 ------------------------------------------------------------
consensus_5686#1 ------------------------------------------------------------
consensus_5686#0 TTTAAGCTTTAATTGGACCAATTGAAATGAAGAATTTCCAATTTCCGACAGAGATCTGTC 180
consensus_5686#2 ------------------------------------------------------------
consensus_5686#1 ------------------------------------------------------------
consensus_5686#0 GAGTGCACAAAGATTGTGTATCCTTATCGTGTCCACAATCAAGAACTAATAATTGTAATT 240
consensus_5686#2 ------------------------------------------------------------
consensus_5686#1 ------------------------------------------------------------
consensus_5686#0 GGTGAAGGGTTAGTAGGCCAGCTCCTAATTTTCTTATCAGAGTCAACATTAGCATCCACA 300
consensus_5686#2 ------------------------------------------------------------
consensus_5686#1 ------------------------------------------------------------
consensus_5686#0 GGCACTTTTGTTCATGCCATGTGTTCTTCCCTCACAATCTCCTTATGATTGATTTGTCCA 360
consensus_5686#2 ------------------------------------------------------------
consensus_5686#1 ------------------------------------------------------------
consensus_5686#0 CGGGAGAATTGCCATCACTTCGGTTCTTGCTTCATTTCTTCTCTGGGTAATGGAATAAGG 420
consensus_5686#2 ------------------------------------------------------------
consensus_5686#1 ------------------------------------------------------------
consensus_5686#0 TGTGAGTGAAACACCTCACATGATGCCTTTCTTCTCCCTCCACTTGAGAAAGCAAATTGT 480
consensus_5686#2 ------------------------------------------------------------
consensus_5686#1 ------------------------------------------------------------
consensus_5686#0 TCCTGTAATTTGAAATCGGCCGGCTTGCTGAGTTGCTGACTGTGCTGGTAATTACCGGCA 540
consensus_5686#2 ------------------------------------------------------------
consensus_5686#1 ------------------------------------------------------------
consensus_5686#0 GCATGCTTTGCTCCTAGCATTATTGATTATCTTGTTTTTTTTTTTTTTTTCCACATCACA 600
consensus_5686#2 ------------------------------------------------------------
consensus_5686#1 ------------------------------------------------------------
consensus_5686#0 TAAATGAAACAGTGTTGGGAGTTAAATTTACTAGCACAGGAGCCAACTAATCTTGTACCA 660
consensus_5686#2 ------------------------------------------------------------
consensus_5686#1 ------------------------------------------------------------
consensus_5686#0 GGCACATTCATCAGAATTATATATATGCAGGCTTAGGCTACACAAAAGCTTGTACTAAAC 720
consensus_5686#2 ------------------------------------------------------------
consensus_5686#1 ------------------------------------------------------------
consensus_5686#0 AGTACTACTAGTTAGACTTGTCATCATAGTGAAGTTAACAAAGTTATCACTTATCAGTGC 780
consensus_5686#2 ------------------------------------------------------------
consensus_5686#1 ------------------------------------------------------------
consensus_5686#0 ATCGTACTTGGCATTAGCGGCCGACAGAGAATCCGCCAGCCACACTCCCCACCTCTAGGG 840
consensus_5686#2 ------------------------------------------------------------
consensus_5686#1 ------------------------------------------------------------
consensus_5686#0 GAGGGGAGTGACAGTCAAGTATCCCTTCATTCTCCCTCTACAATGCAGCTCATGCATAGC 900
consensus_5686#2 ------------------------------------------------------------
consensus_5686#1 ------------------------------------------------------------
consensus_5686#0 CTTTTGATGGAAAAGCAGAAATTCCAGAGAGGCAGCAAGAGCATACCATTTTGATTAGCT 960
consensus_5686#2 ------------------------------------------------------------
consensus_5686#1 ------------------------------------------------------------
consensus_5686#0 CACCACTGGCTCTCCTGGTTGCCCTAAAGTAAGAAGTAGTGTAGTACACTTTTGTAGTTT 1020
consensus_5686#2 ------------------------------------------------------------
consensus_5686#1 ------------------------------------------------------------
consensus_5686#0 TGTTGCTAATCTATTCGGCTAATTCCTACTATATTGATTTTGGAATCTTGTGTTCTTTGG 1080
consensus_5686#2 ------------------------------------------------------------
consensus_5686#1 ------------------------------------------------------------
consensus_5686#0 ATTTACTTACCTTTGTATTCCTGCAAGGGTCAAGTGCTCAGGGGCGGATCTACAGTATAA 1140
consensus_5686#2 ------------------------------------------------------------
consensus_5686#1 ------------------------------------------------------------
consensus_5686#0 GCGTCAGTGTCAAGCGACACCGATGACTTTCGGCAAAACCTATAACAAAACTGCTTATCC 1200
consensus_5686#2 ------------------------------------------------------------
consensus_5686#1 ------------GGAGTTCCC-----CTTTGGGCCCATCCTCTG--AAATCAGGCCACCC 41
consensus_5686#0 ATATACTATAACACTATGTTCTAAGTATAATTAGCATACTATGACACCGACAGACACGTT 1260
consensus_5686#2 ------------------------------------------------------------
consensus_5686#1 TTTTGGTCTGGCGCC-TTTCCACGTTGCAAACCCCTTGGAGGGTAGTTCGTGGTCGCACC 100
consensus_5686#0 ATGACACCAACAAACTGATTTTCTGGATCCGCCACTGCAAGTGCTGACAGAGTTATTGCA 1320
consensus_5686#2 ------------------------------------------------------------
consensus_5686#1 TTC-CTTCACTGAA---GATTCCGAAATCCAACA----GAATTCCGGCCGT-TCTTTAGA 151
consensus_5686#0 GACTCGCAGTCCGTCTTCAGTTGCAAACAGTTT---GGAGGGTAGTTCTTGGTCGTCCAT 1377
consensus_5686#2 ------------------------------------------------------------
consensus_5686#1 AAGAAGCAAGCCGTGCAGAGCTGACCTCTGCCTCACGGGGTGCTGTTCATGCCCTTTTTA 211
consensus_5686#0 TACTTCACTGAAGATTCCGAAATCCAACAAAATTCAGGCCGTTCTTCAGA-AAGAAGCAA 1436
consensus_5686#2 ------------------------------------------------------------
consensus_5686#1 AAATTTCTTTATGGGCCACATATTTAGGCCAACTCCGGCTTTATTCCTGATGATACGCAT 271
consensus_5686#0 GCACTGCAGAGCTGAACTCTGCTTCATTGGATGGTCAAAAAGGAAGGCTGCTGAAGATTG 1496
consensus_5686#2 -----AGGCAGCCGGTTGGTGGGGAAA-AGATGGTCAAAAAGGAAGGCTGCTGAAGATTG 54
consensus_5686#1 CTGCTGC--ATCTGA--CCGGTTTCA---GATGGTCAAAAAGGAAGGCTGCTGAAGATTG 324
* * * * * *******************************
consensus_5686#0 GCTGCATTTGGGCTCTTAGGAATCGATATGTGCCTGCAGAAAGATCGGTCAAGATTATTC 1556
consensus_5686#2 GCTGCATTTGGGCTCTTAGGAATCGATATGTGCCTGCAGAAAGATCGGTCAAGATTATTC 114
consensus_5686#1 GCTGCATTTGGGCTCTTAGGAATCGATATGTGCCTGCAGAAAGATCGGTCAAGATTATTC 384
************************************************************
consensus_5686#0 CTCACGGTTAATGCTGCACTGGCTGTTCATTTGGTTAAATTTTGCTTGATAGCAGTAGGA 1616
consensus_5686#2 CTCACGGTTAATGCTGCACTGGCTGTTCATTTGGTTAAATTTTGCTTGATAGCAGTAGGA 174
consensus_5686#1 CTCACGGTTAATGCTGCCCGGGCTGTTCATTTGGTTAAATTTTGCTTGATAGCAGTAGGA 444
***************** * ****************************************
consensus_5686#0 TGTTTAGAGCTGCCAGCTTCAGGCTTCCGTAGTGCCGTGTTCAAGAAATCAGTGTGTTGA 1676
consensus_5686#2 TGTTTAGAGCTGCCAGCTTCAGGCTTCCGTAGTGCCGTGTTCAAGAAATCAGTGTGTTGA 234
consensus_5686#1 TGTTTAGAGCTGCCAGCGTCAGGCTTCCGTAGTGCCGTGTTCAAGAAATCAGTGTGTTGA 504
***************** ******************************************
consensus_5686#0 TTCTATGACTGAAATAGTTTGCAAGACATGGATAGTATATAGAGAAAATGTCGCTGCTTT 1736
consensus_5686#2 TTCTATGACTGAAATAGTTTGCAAGACATGGATAGTATATAGAGAAA------------- 281
consensus_5686#1 TTCTATGACTGAAATAGTTTGCAAGCCATGGATAGTATATAGAGAAAATGTCGCTGCTTT 564
************************* *********************
consensus_5686#0 TGCCAATCGCATCATCAAGGCAGCAAAGCTATTCCACTATCTTGATTCTATGACAGTTGA 1796
consensus_5686#2 ------------------------------------------------------------
consensus_5686#1 TGCCAATCGCATCATCAAGGCAGCAAAGCTATTCCCCTATCTTGATTCTATGACAGTTGA 624
consensus_5686#0 AAGAGATATAAGCATC------------------------- 1812
consensus_5686#2 -----------------------------------------
consensus_5686#1 AAGAGATATAAGCATCTCCGTAAAAAAAAAAAAAAAAAAAA 665
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||