cluster # 5688

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Oryza sativa
cluster # 5688 cluster # 5688 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5688#0 length = 452 sequences # 2

consensus_5688#1 length = 428 sequences # 1

consensusID : consensus_5688#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 452
fasta sequence

                              [CNCAGGAAGTCNACTGCCAGGATCTTCCTNGCCNGCGTGCCCCCACAGGCCACCTTTCCACGTGTTACAATTTATACACCGTCCGATGCATGATGCGCATCACTGATCCCCGTGGTGGGTGGGGAGGGAGTTTAGGAGGTGAGGTTTGGAACGAGATAATGTTCATAAAAAAAGAAGTTAAGAATAAAACGATAAGAAAATAACCTTGTGTAGTTGGGTCACTGGGTGATTAGCTGGTGGACACTGACAATCAGGATCCACTTGTTCAGAGTGATTAATACTCCTCTGTTATGTGTATTTAAGGAGAAAAATAAAAAAATATAAATTGCCAGTGTACAAGTAGAACTGTACTAGAGTGACGCATGTATTTATCTTGGAAGTTAGGAGTATCTTGGAAGCAATTTGTTTGTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU088736             [CNCAGGAAGTCNACTGCCAGGATCTTCCTNGCCNGCGTGCCCCCACAGGCCACCTTTCCACGTGTTACAATTTATACACCGTCCGATGCATGATGCGCATCACTGATCCCCGTGGTGGGTGGGGAGGGAGTTTAGGAGGTGAGGTTTGGAACGAGATAATGTTCATAAAAAAAGAAGTTAAGAATAAAACGATAAGAAAATAACCTTGTGTAGTTGGGTCACTGGGTGATTAGCTGGTGGACACTGACAATCAGGATCCACTTGTTCAGAGTGATTAATACTCCTCTGTTATGTGTATTTAAGGAGAAAAATAAAAAAATATAAATTGCCAGTGTACAAGTAGAACTGTACTAGAGTGACGCATGTATTTATCTTGGAAGTTAGGAGTATCTTGGAAGCAATTTGTTTGTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU097527             [                                                                                                                                                                                                                                                                         TCAGAGTGATTAATACCCCNCTGTTATGTGTATTTAAGGAGNAAAATNAAAAAATATAAATTGCCNGTGTACAAGTAGAACTGTACTAGAGTGACNCATGTNTTTATCTTGGAAGTTAGGAGTATCTTGGAANCAATTTGTTTGTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_5688#0
CNCAGGAAGTCNACTGCCAGGATCTTCCTNGCCNGCGTGCCCCCACAGGCCACCTTTCCA
CGTGTTACAATTTATACACCGTCCGATGCATGATGCGCATCACTGATCCCCGTGGTGGGT
GGGGAGGGAGTTTAGGAGGTGAGGTTTGGAACGAGATAATGTTCATAAAAAAAGAAGTTA
AGAATAAAACGATAAGAAAATAACCTTGTGTAGTTGGGTCACTGGGTGATTAGCTGGTGG
ACACTGACAATCAGGATCCACTTGTTCAGAGTGATTAATACTCCTCTGTTATGTGTATTT
AAGGAGAAAAATAAAAAAATATAAATTGCCAGTGTACAAGTAGAACTGTACTAGAGTGAC
GCATGTATTTATCTTGGAAGTTAGGAGTATCTTGGAAGCAATTTGTTTGTCTTTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_5688#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 428
fasta sequence

                              [CATGCGCGTATAGCGAGTGCCCGTCGGGATTCGCCGTGGCGGACGGCGAAGGGAAGGTGTACNCCGGAGGATGCCTGGAGTCCGCGGCGTATAATCCGACACTAGGCCCCGTGCAGGCGGCCATCATAGGGATGGTGGCCGCCGGGGGCGCGCCGCCGGAGACGTGGTGGCGGCGGCGCTCGTGGAGAAGGAAGCGGGGTTGGTGTCGCAGGAAGCGACGGCCAGGATCTTCCTGGCCGCTGTGGCCCCACAGGCCACTTCCACGTGTACAATTATACACCGTCCGATGCATGATGCGCATCACTGATCCCCGTGGTGGGTGGGGANGGAGTTGTAGGAGGTNAGGTTTGGGAACGAGATATGTTCATAAAAAAAGGAGTTAAGATAAACGATAAGAAATAAACTTGTGATAGTTGGGGTCANTGGGT]

[+] EMBL AU070599             [CATGCGCGTATAGCGAGTGCCCGTCGGGATTCGCCGTGGCGGACGGCGAAGGGAAGGTGTACNCCGGAGGATGCCTGGAGTCCGCGGCGTATAATCCGACACTAGGCCCCGTGCAGGCGGCCATCATAGGGATGGTGGCCGCCGGGGGCGCGCCGCCGGAGACGTGGTGGCGGCGGCGCTCGTGGAGAAGGAAGCGGGGTTGGTGTCGCAGGAAGCGACGGCCAGGATCTTCCTGGCCGCTGTGGCCCCACAGGCCACTTCCACGTGTACAATTATACACCGTCCGATGCATGATGCGCATCACTGATCCCCGTGGTGGGTGGGGANGGAGTTGTAGGAGGTNAGGTTTGGGAACGAGATATGTTCATAAAAAAAGGAGTTAAGATAAACGATAAGAAATAAACTTGTGATAGTTGGGGTCANTGGGT]




>consensus_5688#1
CATGCGCGTATAGCGAGTGCCCGTCGGGATTCGCCGTGGCGGACGGCGAAGGGAAGGTGT
ACNCCGGAGGATGCCTGGAGTCCGCGGCGTATAATCCGACACTAGGCCCCGTGCAGGCGG
CCATCATAGGGATGGTGGCCGCCGGGGGCGCGCCGCCGGAGACGTGGTGGCGGCGGCGCT
CGTGGAGAAGGAAGCGGGGTTGGTGTCGCAGGAAGCGACGGCCAGGATCTTCCTGGCCGC
TGTGGCCCCACAGGCCACTTCCACGTGTACAATTATACACCGTCCGATGCATGATGCGCA
TCACTGATCCCCGTGGTGGGTGGGGANGGAGTTGTAGGAGGTNAGGTTTGGGAACGAGAT
ATGTTCATAAAAAAAGGAGTTAAGATAAACGATAAGAAATAAACTTGTGATAGTTGGGGT
CANTGGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5688#0      CNCAGGAAGTCNACTGCCAGGATCTTCCTNGCCNGCGTGCCCCCACAGGCCACCTTTCCA 60
consensus_5688#1      --------------------CATGCGCGTATAGCGAGTGCCCGT-CGGGATTCGCCGTGG 39
                                           **   * *     * ******   * **   *       

consensus_5688#0      CGTGTTACAATTTATACACCGTCCGATGCATGATGCGCATCACTGATCCCCGTGGTGGGT 120
consensus_5688#1      CGGACGGCGAAG-GGAAGGTGTACNCCGGAGGATGC------CTGGAGTCCGCGGCGTAT 92
                      **     * *     *    ** *   * * *****      ***    *** ** *  *

consensus_5688#0      GGGGAGGGAGTTTAGGAGGTG-AGGTTTGGAACGAGATAATGTTCATAAAAAAAGAAGTT 179
consensus_5688#1      AATCCGACACTAGGCCCCGTGCAGGCGGCCATCATAGGGATGGTGGCCGCCGGGGGCGCG 152
                           *  * *       *** ***     * *      *** *          *  *  

consensus_5688#0      AAGAATAAAACGATAAGAAAATAAC-CTTGTGTAGTTGGGTCACTGGGTGATTAGCTGGT 238
consensus_5688#1      CCGCCGGAGACGTGGTGGCGGCGGCGCTCGTGGAGAAGGAA-GCGGGGTTGGTGTC--GC 209
                        *    * ***    *       * ** *** **  **    * ****   *  *  * 

consensus_5688#0      GGACACTGACAATCAGGATCCACTTGTTCAGAGTGATTA-ATACTCCTCTGTTATGTGTA 297
consensus_5688#1      AGGAAGCGACGGCCAGGATCTTCCTGGCCGCTGTGGCCCCACAGGCCACTTCCACGTGTA 269
                       *  *  ***   *******  * **  *   ***     * *  ** **   * *****

consensus_5688#0      TTTAAGGAGAAAAATAAA---AAAATATAAATTGCCAGTGTACAAGTAGAACTGTACTAG 354
consensus_5688#1      CAATTATACACCGTCCGATGCATGATGCGCATCACTGATCCCCGTGGTGGGTGGGGANGG 329
                             * *       *   *  **    **  *   *   *  *  *    *     *

consensus_5688#0      AGTGACGCATGTATTTATCTTGGAAGTTAGGAGTATCTTGGAAGCAATTTGTTTGTCTTT 414
consensus_5688#1      AGTTGTAGGAG-GTNAGGTTTGGGAACGAGATATGTTCATAAAAAAAGGAGTTAAGATAA 388
                      ***       *  *     **** *   **   * *     **  **   ***    *  

consensus_5688#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-- 452
consensus_5688#1      ACGATAAGAAATAAACTTGTGATAGTTGGGGTCANTGGGT 428
                      *  * ** *** ***      * *         *